BAC Information

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BAC

Clone NameB6Ng01-334C21
Chromosome3 (Build37)
Map Location 130,745,812 - 130,747,003
singlet/doubletsinglet
Overlap genenone
Upstream geneSec24b, EG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568
Downstream geneLef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334C21.bB6Ng01-334C21.g
ACCGA119748GA119749
length1,1961,193
definitionB6Ng01-334C21.b B6Ng01-334C21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtttagctctgtaccccatttttaatagggttatttgattcac
tcgagtctaacttcttgaattctttgtatatattggatattagccctcta
ttgggtgtagaattggtaaagatcttttcccaatctgttggttgtcctta
tatcctattgacagtgtcctttgccttacagaagctttgtaattttttga
agtcccatttgtctattgttgatcttatagcataagtcattggtgttctg
tttaggaaattttccccatatgaactatgaattctaaatttctacaaatt
gttcattcattatagcccagaggtacaatggacataagcaagtttggtgt
tcttaatttccatttccatgaattaagattcagaggatcaatcagtaggt
actaattaatcttttcagatccaaggccaatgattcaatgtttctctagc
tttgtgcatgtctgcatggggcacaggggccctataaacacacacaagta
tatactttgtatccagctgtgtatctggagtcaggattaaaataaaattt
atgagtaaactttgtttcatagccataaacaggaaaccgctacttgtgaa
ttcatgaattagaattctgtttacaaaagcattgtgaggggatagcattg
tttggaccagtgagatcctgctgtctggatgaaaatgcatcaggttggct
cttgctcaggacctgccttggatgctccctgctccaaacagctctgggca
gactgagcaattaggagagatttaggatgagtagtttagatttctcgctc
tatctcagataataaggcagaaagcaactgaggaagacacgtgctggctc
atacaataggccagagtactcctcatgtgctgagacagctttactctcaa
aactgttaagtttttgttaagttcctctcaaaacttgttacattctgtta
agttcttaagctagagcctttcataagaagtaccataggccctggtcccc
ttcctggtgactgccagtgcttatagccttgaccccacctgaagtttggg
cccaccctgtttctctttctcacctgaaaataactaatgctataatatat
ttctgttgaaaaaaaaactgcctttccagactggcttacaaatatagttg
ttattctgaaatcgtacccttgttgatgatcacggaatatataaaa
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggactcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccaaggagctaaagggatctgcaaccct
atagtggacacattatgagctaaccagtacccccggagctcttgactcta
gctgcatatatatcaaaaagaatggcctagtcgtcatcactggaaagaaa
aggccattgacttgccaactttatatgcccagttaaggaatgcatgtgaa
ggggattggggtggtcaagtggaaatgcgtgcgtgtactccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_130745812_130747003
seq2: B6Ng01-334C21.b_51_1246

seq1  GAATTCTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGATTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGATTCAC  50

seq1  TCGAGTCTAACTTCTTGAATTCTTTGTATATATTGGATATTAGCCCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTCTAACTTCTTGAATTCTTTGTATATATTGGATATTAGCCCTCTA  100

seq1  TTGGGTGTAGAATTGGTAAAGATCTTTTCCCAATCTGTTGGTTGTCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGTAGAATTGGTAAAGATCTTTTCCCAATCTGTTGGTTGTCCTTA  150

seq1  TATCCTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGTAATTTTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGTAATTTTTTGA  200

seq1  AGTCCCATTTGTCTATTGTTGATCTTATAGCATAAGTCATTGGTGTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCATTTGTCTATTGTTGATCTTATAGCATAAGTCATTGGTGTTCTG  250

seq1  TTTAGGAAATTTTCCCCATATGAACTATGAATTCTAAATTTCTACAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAAATTTTCCCCATATGAACTATGAATTCTAAATTTCTACAAATT  300

seq1  GTTCATTCATTATAGCCCAGAGGTACAATGGACATAAGCAAGTTTGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTCATTATAGCCCAGAGGTACAATGGACATAAGCAAGTTTGGTGT  350

seq1  TCTTAATTTCCATTTCCATGAATTAAGATTCAGAGGATCAATCAGTAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTTCCATTTCCATGAATTAAGATTCAGAGGATCAATCAGTAGGT  400

seq1  ACTAATTAATCTTTTCAGATCCAAGGCCAATGATTCAATGTTTCTCTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTAATCTTTTCAGATCCAAGGCCAATGATTCAATGTTTCTCTAGC  450

seq1  TTTGTGCATGTCTGCATGGGGCACAGGGGCCCTATAAACACACACAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCATGTCTGCATGGGGCACAGGGGCCCTATAAACACACACAAGTA  500

seq1  TATACTTTGTATCCAGCTGTGTATCTGGAGTCAGGATTAAAATAAAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTGTATCCAGCTGTGTATCTGGAGTCAGGATTAAAATAAAATTT  550

seq1  ATGAGTAAACTTTGTTTCATAGCCATAAACAGGAAACCGCTACTTGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTAAACTTTGTTTCATAGCCATAAACAGGAAACCGCTACTTGTGAA  600

seq1  TTCATGAATTAGAATTCTGTTTACAAAAGCATTGTGAGGGGATAGCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAATTAGAATTCTGTTTACAAAAGCATTGTGAGGGGATAGCATTG  650

seq1  TTTGGACCAGTGAGATCCTGCTGTCTGGATGAAAATGCATCAGGTTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACCAGTGAGATCCTGCTGTCTGGATGAAAATGCATCAGGTTGGCT  700

seq1  CTTGCTCAGGACCTGCCTTGGATGCTCCCTGCTCCAAACAGCTCTGGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCAGGACCTGCCTTGGATGCTCCCTGCTCCAAACAGCTCTGGGCA  750

seq1  GACTGAGCAATTAGGAGAGATTTAGGATGAGTAGTTTAGATTTCTCGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGCAATTAGGAGAGATTTAGGATGAGTAGTTTAGATTTCTCGCTC  800

seq1  TATCTCAGATAATAAGGCAGAAAGCAACTGAGGAAGACACGTGCTGGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAGATAATAAGGCAGAAAGCAACTGAGGAAGACACGTGCTGGCTC  850

seq1  ATACAATAGGCCAGAGTACTCCTCATGTGCTGAGACAGCTTTACTCTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATAGGCCAGAGTACTCCTCATGTGCTGAGACAGCTTTACTCTCAA  900

seq1  AACTGTTAAGTTTTTGTTAAGTTCCTCTCAAAACTTGTTACATTCTGTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTAAGTTTTTGTTAAGTTCCTCTCAAAACTTGTTACATTCTGTTA  950

seq1  AGTTCTTAAGCTAGAGCCTTTCATAAGAAGTACCATAGGCCCTGGTCCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTAAGCTAGAGCCTTTCATAAGAAGTACCATAGGCCCTGGTCCCC  1000

seq1  TTCCT-GTGACTGCCAGTTGCTTATAGCCTTGACCTCACCTGAAGTTTGG  1049
      ||||| ||||||||||| ||||||||||||||||| ||||||||||||||
seq2  TTCCTGGTGACTGCCAG-TGCTTATAGCCTTGACCCCACCTGAAGTTTGG  1049

seq1  GCCCACCCTGTTTCTC-TTCTCA-CTGAAAAT-ACATATGCTAT-ATATA  1095
      |||||||||||||||| |||||| |||||||| ||  ||||||| |||||
seq2  GCCCACCCTGTTTCTCTTTCTCACCTGAAAATAACTAATGCTATAATATA  1099

seq1  TTTCTGTTGAAAAAAAAAACTGCATTTTCAGACTGGC-TACAAA-ATAGT  1143
      ||||||||| ||||||||||||| ||| ||||||||| |||||| |||| 
seq2  TTTCTGTTG-AAAAAAAAACTGCCTTTCCAGACTGGCTTACAAATATAG-  1147

seq1  TTGTTATTCTGAATTCGTAACTCTTGGTAGATGATCA-GGAATATAAAAA  1192
      ||||||||||||| |||| || ||| || |||||||| |||||||| |||
seq2  TTGTTATTCTGAAATCGT-ACCCTT-GTTGATGATCACGGAATATATAAA  1195

seq1  -  1192
       
seq2  A  1196