BAC Information

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BAC

Clone NameB6Ng01-334G02
Chromosome3 (Build37)
Map Location 73,388,665 - 73,524,312
singlet/doubletdoublet
Overlap geneBche
Upstream gene2010204N08Rik, Slitrk3
Downstream geneLOC667425, LOC619764, LOC667434, LOC100041551
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334G02.bB6Ng01-334G02.g
ACCGA119897GA119898
length1,0821,104
definitionB6Ng01-334G02.b B6Ng01-334G02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,388,665 - 73,389,749)(73,523,200 - 73,524,312)
sequence
gaattctgtcacaacagctcagacaggaaaccctggccacttgttgcaca
gagaagaatgtagaggaaaatagtgagaatcctatagagattgcaacagg
atgagatttctcgactgctgatgggtatacactgtaggagaaatgagcgt
caagaatggattctcaccgggcgtggtggcacatgcctttaatcccagca
ctcgggaggcagaggcaggcagatttctgagttcgaggccagcctggtct
acaaagtgagtttcaggacagccagggctacacagagaaaccttgtctcg
aaaaaccaaattaaaaaaaaaacaaaacaaaacaaaagaatggattacca
tattctgtttaaaaagtacaataactctatgttaatattcttcacaactt
acaaataatcattagccaggagagaatagaattttattttgggatgtata
aagttaaacctctttattatagacagtttttgtgtgtcccctgcattgaa
ctttgctgagtcagaataaaatttgtaatgccaaagaataaagtaagtga
catgttcatttttctatcatcaacaaatgtaacttaaagaagaaagaggg
gttttttttttttttggcttataatttgaagctaacgcacactgtggttg
tgaaatgcacgtccacctcaaatctatggtcaagaaacagagagaaatga
gtgaggtttctctactcgcgtccttcttcttatgtgtttatttagtataa
gagacagcccattggatgacattactcacattaggagttggagcaatttg
acgctggacacattaaatgtacttatttaagagggggtgtgtcctgagct
acatctctctggaactatgaccacaaatatgcacagagctgtgtgtccta
ggtgattctaaatgacaaccagtggatgatgagagtatcacattatggat
aagtttcagagtggtatgatatatcactaagtttgacataagctttaaat
tgctcaatatttgaaaaatgagaatatagaaaatctccacatatgttatt
ttattgtatatgctatgtatatatacacatgt

gaattcctgcaatctcttagcctagctagcctgtgttaaggaatagaata
agatgggcaggttttgtcaagtaaggaagaaacaaggaataacagttaag
ggcattctcagaccttcatatgatgctaaggaacgcacacctttgcacat
agaaattcagacacattttaaaattagtcttcctccacaagtgtaacctc
aaatctttagcaactcttttttgtttgtttgtttgtttgtttgtttttgt
ttgtttgttttttttgagacagggtttttttgtatagccatagctgtcct
agaactcactctgtagaccaggttagcctcgaactcagaaatttgtctgc
ctctgccttccaagtgctgggattaaaggcattagacaccacttcctggc
tttagcaacttttgatgtttttatttctagacttttctttagataaaatt
ccattttggacttgattattaacctctcccaataagaaacattttgagtt
tttatttatttcactcatgagcctccatattttccttgtctacagattgt
ttctcacaaacatttcttagtattcaaatttcatcttcacaggaaacatc
tagtatctcagctcgtttaggacaaggtcccttatttttgtccaatgtaa
ataaaggaatttttctgttagagttcaagtggatgtgcttcttggtttgt
ttgtgtatgtgcctgtctatctatctgtctatagttctgtatgtgtctct
gtatttttcaaatcagtgaatagaatttacacttagaattttctactgaa
accacatccattttaattcacagcattatttaagagtctttcagtttctg
actttttaaaccaaataatttttattataaaatataggaattttatatca
ggtctgatgccatattattaaataaaatttccccactttctaaagtaggg
caaaagaactttagtaacctgatatataagtataatatatcagtcagcta
tgaataaaaattaattctaaacatatttttcaaccaggaagctattttat
tgatgattcctggacagcaaagcatatgatagaaataggtccggatatac
agta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_73388665_73389749
seq2: B6Ng01-334G02.b_44_1125

seq1  GAATTCTGTCACAACAGCTCAGACAGGAAACCCTGGCCACTTGTTGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCACAACAGCTCAGACAGGAAACCCTGGCCACTTGTTGCACA  50

seq1  GAGAAGAATGTAGAGGAAAATAGTGAGAATCCTATAGAGATTGCAACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAATGTAGAGGAAAATAGTGAGAATCCTATAGAGATTGCAACAGG  100

seq1  ATGAGATTTCTCGACTGCTGATGGGTATACACTGTAGGAGAAATGAGCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATTTCTCGACTGCTGATGGGTATACACTGTAGGAGAAATGAGCGT  150

seq1  CAAGAATGGATTCTCACCGGGCGTGGTGGCACATGCCTTTAATCCCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGGATTCTCACCGGGCGTGGTGGCACATGCCTTTAATCCCAGCA  200

seq1  CTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCT  250

seq1  ACAAAGTGAGTTTCAGGACAGCCAGGGCTACACAGAGAAACCTTGTCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGAGTTTCAGGACAGCCAGGGCTACACAGAGAAACCTTGTCTCG  300

seq1  AAAAACCAAATTAAAAAAAAAACAAAACAAAACAAAAGAATGGATTACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAATTAAAAAAAAAACAAAACAAAACAAAAGAATGGATTACCA  350

seq1  TATTCTGTTTAAAAAGTACAATAACTCTATGTTAATATTCTTCACAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTTTAAAAAGTACAATAACTCTATGTTAATATTCTTCACAACTT  400

seq1  ACAAATAATCATTAGCCAGGAGAGAATAGAATTTTATTTTGGGATGTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAATCATTAGCCAGGAGAGAATAGAATTTTATTTTGGGATGTATA  450

seq1  AAGTTAAACCTCTTTATTATAGACAGTTTTTGTGTGTCCCCTGCATTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAACCTCTTTATTATAGACAGTTTTTGTGTGTCCCCTGCATTGAA  500

seq1  CTTTGCTGAGTCAGAATAAAATTTGTAATGCCAAAGAATAAAGTAAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGAGTCAGAATAAAATTTGTAATGCCAAAGAATAAAGTAAGTGA  550

seq1  CATGTTCATTTTTCTATCATCAACAAATGTAACTTAAAGAAGAAAGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCATTTTTCTATCATCAACAAATGTAACTTAAAGAAGAAAGAGGG  600

seq1  GTTTTTTTTTTTTTTGGCTTATAATTTGAAGCTAACGCACACTGTGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTTTGGCTTATAATTTGAAGCTAACGCACACTGTGGTTG  650

seq1  TGAAATGCACGTCCACCTCAAATCTATGGTCAAGAAACAGAGAGAAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGCACGTCCACCTCAAATCTATGGTCAAGAAACAGAGAGAAATGA  700

seq1  GTGAGGTTTCTCTACTCGCGTCCTTCTTCTTATGTGTTTATTTAGTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTTTCTCTACTCGCGTCCTTCTTCTTATGTGTTTATTTAGTATAA  750

seq1  GAGACAGCCCATTGGATGACATTACTCACATTAGGAGTTGGAGCAATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCCCATTGGATGACATTACTCACATTAGGAGTTGGAGCAATTTG  800

seq1  ACGCTGGACACATTAAATGTACTTATTTAAGAGGGGGTGTGTCCTGAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGGACACATTAAATGTACTTATTTAAGAGGGGGTGTGTCCTGAGCT  850

seq1  ACATCTCTCTGGAACTATGACCACAAATATGCACAGAGCTGTGTGTCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTCTGGAACTATGACCACAAATATGCACAGAGCTGTGTGTCCTA  900

seq1  GGTGATTCTAAATGACAACCAGTGGATGATGAAGAGTATCACATTATGGA  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGTGATTCTAAATGACAACCAGTGGATGATG-AGAGTATCACATTATGGA  949

seq1  TAAGTTTCAGAGTGGTATGATATATCACTAAGTTTGACATTAGCTTTAAA  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAAGTTTCAGAGTGGTATGATATATCACTAAGTTTGACATAAGCTTTAAA  999

seq1  TTGCTCAATATTTGAAAAATGAGAATATAGAAAATTCTCCACATATGTTA  1050
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGCTCAATATTTGAAAAATGAGAATATAGAAAA-TCTCCACATATGTTA  1048

seq1  TTTTATTGTATATGCTATGTATATATTACACATGT  1085
      ||||||||||||||||||||||||| |||||||||
seq2  TTTTATTGTATATGCTATGTATATA-TACACATGT  1082


seq1: chr3_73523200_73524312
seq2: B6Ng01-334G02.g_66_1169 (reverse)

seq1  TACTGTATATCCCGACCTTATTTCTTATCAATATGCTTTTGCTGT-CAGG  49
      |||||||||||| |||| |||||| |||| |||||| |||||||| ||||
seq2  TACTGTATATCCGGACC-TATTTC-TATC-ATATGC-TTTGCTGTCCAGG  46

seq1  AATTCATC-ATAAATTAGCTTCTTGGGTTGAAAATATTGTTTAGAATTTA  98
      || ||||| ||||| ||||||| | |||||||||   ||||||||| |||
seq2  AA-TCATCAATAAAATAGCTTCCT-GGTTGAAAAATATGTTTAGAA-TTA  93

seq1  TTTTTTATTCATAGCTGACTGATATATTTATACTTATATATCAGGTTACT  148
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATTTTTATTCATAGCTGACTGATATA-TTATACTTATATATCAGGTTACT  142

seq1  AAAGTTCTTTTTGCCCTACTTTAGAAAAGTGGGGAAATTTTATTTAATAA  198
      ||||||| |||||||||||||||| ||||||||||||||||||||||| |
seq2  AAAGTTC-TTTTGCCCTACTTTAG-AAAGTGGGGAAATTTTATTTAAT-A  189

seq1  ATATGGCATCAGACCTGATATAAAATTCCTATATTTTATAATAAAATTAT  248
      |||||||||||||||||||||||||||||||||||||||||||||| |  
seq2  ATATGGCATCAGACCTGATATAAAATTCCTATATTTTATAATAAAAATTA  239

seq1  TTTGGTTTAAAAAGTCAGAAACTGAAAGACTCTTAAATAATGCTGTGAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTAAAAAGTCAGAAACTGAAAGACTCTTAAATAATGCTGTGAAT  289

seq1  TAAAATGGATGTGGTTTCAGTAGAAAATTCTAAGTGTAAATTCTATTCAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGATGTGGTTTCAGTAGAAAATTCTAAGTGTAAATTCTATTCAC  339

seq1  TGATTTGAAAAATACAGAGACACATACAGAACTATAGACAGATAGATAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGAAAAATACAGAGACACATACAGAACTATAGACAGATAGATAGA  389

seq1  CAGGCACATACACAAACAAACCAAGAAGCACATCCACTTGAACTCTAACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACATACACAAACAAACCAAGAAGCACATCCACTTGAACTCTAACA  439

seq1  GAAAAATTCCTTTATTTACATTGGACAAAAATAAGGGACCTTGTCCTAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTCCTTTATTTACATTGGACAAAAATAAGGGACCTTGTCCTAAA  489

seq1  CGAGCTGAGATACTAGATGTTTCCTGTGAAGATGAAATTTGAATACTAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTGAGATACTAGATGTTTCCTGTGAAGATGAAATTTGAATACTAAG  539

seq1  AAATGTTTGTGAGAAACAATCTGTAGACAAGGAAAATATGGAGGCTCATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTGTGAGAAACAATCTGTAGACAAGGAAAATATGGAGGCTCATG  589

seq1  AGTGAAATAAATAAAAACTCAAAATGTTTCTTATTGGGAGAGGTTAATAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATAAATAAAAACTCAAAATGTTTCTTATTGGGAGAGGTTAATAA  639

seq1  TCAAGTCCAAAATGGAATTTTATCTAAAGAAAAGTCTAGAAATAAAAACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCCAAAATGGAATTTTATCTAAAGAAAAGTCTAGAAATAAAAACA  689

seq1  TCAAAAGTTGCTAAAGCCAGGAAGTGGTGTCTAATGCCTTTAATCCCAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGTTGCTAAAGCCAGGAAGTGGTGTCTAATGCCTTTAATCCCAGC  739

seq1  ACTTGGAAGGCAGAGGCAGACAAATTTCTGAGTTCGAGGCTAACCTGGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAAGGCAGAGGCAGACAAATTTCTGAGTTCGAGGCTAACCTGGTC  789

seq1  TACAGAGTGAGTTCTAGGACAGCTATGGCTATACAAAAAAACCCTGTCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTGAGTTCTAGGACAGCTATGGCTATACAAAAAAACCCTGTCTC  839

seq1  AAAAAAAACAAACAAACAAAAACAAACAAACAAACAAACAAACAAAAAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACAAACAAACAAAAACAAACAAACAAACAAACAAACAAAAAAG  889

seq1  AGTTGCTAAAGATTTGAGGTTACACTTGTGGAGGAAGACTAATTTTAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTAAAGATTTGAGGTTACACTTGTGGAGGAAGACTAATTTTAAAA  939

seq1  TGTGTCTGAATTTCTATGTGCAAAGGTGTGCGTTCCTTAGCATCATATGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGAATTTCTATGTGCAAAGGTGTGCGTTCCTTAGCATCATATGA  989

seq1  AGGTCTGAGAATGCCCTTAACTGTTATTCCTTGTTTCTTCCTTACTTGAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGAGAATGCCCTTAACTGTTATTCCTTGTTTCTTCCTTACTTGAC  1039

seq1  AAAACCTGCCCATCTTATTCTATTCCTTAACACAGGCTAGCTAGGCTAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGCCCATCTTATTCTATTCCTTAACACAGGCTAGCTAGGCTAAG  1089

seq1  AGATTGCAGGAATTC  1113
      |||||||||||||||
seq2  AGATTGCAGGAATTC  1104


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