BAC Information

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BAC

Clone NameB6Ng01-334N18
Chromosome3 (Build37)
Map Location 89,910,401 - 90,122,784
singlet/doubletdoublet
Overlap geneNup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b
Upstream geneLOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3
Downstream geneGatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334N18.bB6Ng01-334N18.g
ACCGA120259GA120260
length870960
definitionB6Ng01-334N18.b B6Ng01-334N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,910,401 - 89,911,268)(90,121,938 - 90,122,784)
sequence
gaattcaccaagtacttccacactaacccttggttcagctttgatctgtg
ggccttacacaactgcttaagctctgtctcacgccctttcttgaaaaacc
aaatcctgatatctccttttgtcagattgagtgcagtagccaaggcctcc
agagtcttcttgttagggttgggttctgtcttgtgaatcctattttaaac
atcgtgggaaaattacattttatatctttgcacaagtgatcattgggaag
tggttcttgtcattctccagttttaattcttgtgtcatctaacagtggtt
ctgtatagtatcctcaggcattcctgctggtatgtaacatggaagaacta
tatactccacttgcctgtgttgcctgaaccatgtatttatttcatgctct
aaaccatgtagtcttgtgaggcattccactcatcatgatgcaaataccat
tcagcctttatatgaaaatggtacctcgtgctcccaaagagctgttcttg
ttgctgaatccacccaaccgatacgcctcagcagcatcattcttgctcga
gaagtgggtatgttatggaatttgactcattggttcctgtggacattgtt
ccttgacacagagtctcactatgtagccatgactttcctagaattcacta
tgtagaccaggctgacctctcccactggagtgttaggattaaaagtgtgt
atcaccatgaccagtcattaatttgcaattttgatacagggtcttcctag
cactggtatacactgtttaacccaggttggccttgaactcacagaaaata
ctcatgcattaccctcctgggtgccgagattaaagatgtgcatcacagcg
ggcagtgggtggtgtatgcc
gaattcaatccttgggtagatatgacgaatatccataatcccaaaaactg
accgatgtaaggattgccacatgttcaggtccagcttgatccacaaagaa
ccttccagacaaaccagacctttacagaaagactcatctccaaaaaagag
agagagagaaagagagagagagagagaaagacacacataaagtccttcaa
gatggctcagtgactaaaggttcttgccgccaaacctgataacctctgat
aacctgagttttatcctcctaacccatacagtaggagacaacagactcct
gaaagttgtcctcatatctctatggatggtgtagctggtgggcctgtata
cacactccctctccaggaccaaatagatagatcagtttagagtacttgct
gcttataagaaaatctaagtctagttcccgtgtgctctatggggatccga
aacctctgacctctgtagacaccaaagtcttgtgtacattctcaaccaac
tgactggaccaaaattaaatttaaaaacaacgatccccccctcaaaatac
agctctacccaaacatcttaaaatgcttgtttgtattcaactacgtacaa
cctcgaatacggaggtaaaaaaatacttttagtagtcaattgtgtgacta
ctagataaataatgtcacatcttttttaaacccttgactttactttgtta
tgacattcttctattattctcttccagagagagacttttagcactgagaa
ccacaggatggagggtatacagagtgctcagagtgaattcaaagcccagc
ttgtatttcttactactcactgcatcaagatgcacaaacataaattaggg
ggataggaccctgatatagttgtctcttgtgagaactacccacggggcct
agcaacacagaagtggatgctcacagttcagcttatgggatggatcacag
ggctcccaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89910401_89911268
seq2: B6Ng01-334N18.b_45_914

seq1  GAATTCAGCAAGTACTTCCACACTAACCCTTGGTTCAGCTTTGATCTGTG  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAAGTACTTCCACACTAACCCTTGGTTCAGCTTTGATCTGTG  50

seq1  GGCCTTAGACAACTGCTTAAGCTCTGTCTCACGCCCTTTCTTGAAGAACC  100
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  GGCCTTACACAACTGCTTAAGCTCTGTCTCACGCCCTTTCTTGAAAAACC  100

seq1  AAATCCTGATATCTCCTTTTGTCAGTTTGAGTGCAGTAGCCAAGGCCTCC  150
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAATCCTGATATCTCCTTTTGTCAGATTGAGTGCAGTAGCCAAGGCCTCC  150

seq1  AGAGTCTTCTTGTTAGGGTTGGGTTCTGTCTTGTGAGTCCTATTTTAAAC  200
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGAGTCTTCTTGTTAGGGTTGGGTTCTGTCTTGTGAATCCTATTTTAAAC  200

seq1  ATCGTGGGAGAATTACATTTTAGATCTTTGCACAAGTGATCATTGGGAAG  250
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  ATCGTGGGAAAATTACATTTTATATCTTTGCACAAGTGATCATTGGGAAG  250

seq1  TGGTTCTTGTCATTCTCCAGTTTTAATTCTTGTGTCATCTAACAGTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTTGTCATTCTCCAGTTTTAATTCTTGTGTCATCTAACAGTGGTT  300

seq1  CTGTAGAGTATCCTCAGGCATTCCTGCTGGTATGTAACATGGAAGAACTA  350
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAGTATCCTCAGGCATTCCTGCTGGTATGTAACATGGAAGAACTA  350

seq1  TAGACTCCACTTGCCTGTGTTGCCTGAACCATGTATTTATTTCATGCTCT  400
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCCACTTGCCTGTGTTGCCTGAACCATGTATTTATTTCATGCTCT  400

seq1  AAACCATGTTGTCTTGGCAGGCATTCCACTCATCATGATGCAGTTACCAT  450
      ||||||||| ||||||  ||||||||||||||||||||||||  ||||||
seq2  AAACCATGTAGTCTTGTGAGGCATTCCACTCATCATGATGCAAATACCAT  450

seq1  TCAGCCTTTATATGAAAATGGTACCTCGTGCTCCCAAAGAGCTGTTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTTATATGAAAATGGTACCTCGTGCTCCCAAAGAGCTGTTCTTG  500

seq1  TTGCTGAATCCACCCAACCGATACGCCTCAGCAGCATCATTCTTGCTCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAATCCACCCAACCGATACGCCTCAGCAGCATCATTCTTGCTCGA  550

seq1  GAAGTGGGTATGTTATGGAATTTGACTCATTGGTTCCTGTGGCCATTGTT  600
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAAGTGGGTATGTTATGGAATTTGACTCATTGGTTCCTGTGGACATTGTT  600

seq1  CCTTGACACAGAGTCTCACTATGTAGCCATGACTTTCCTAGAATTCACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACACAGAGTCTCACTATGTAGCCATGACTTTCCTAGAATTCACTA  650

seq1  TGTAGACCAGGCTGACCTCTCCCACTGGAGTGTTAGGATTAAAAGTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGACCTCTCCCACTGGAGTGTTAGGATTAAAAGTGTGT  700

seq1  ATCACCATGACCAGGCATTAATTTGCAATTTTGAGACAGGGTCTTCCTAG  750
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  ATCACCATGACCAGTCATTAATTTGCAATTTTGATACAGGGTCTTCCTAG  750

seq1  CACTGGTATACACTGTTTAACCCAGGTTGGCCTTGAACTCACAG-AAATA  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CACTGGTATACACTGTTTAACCCAGGTTGGCCTTGAACTCACAGAAAATA  800

seq1  CTCATGCATTAACCTCCTGGGTGCCGAGATTAAAGATGTGCATCACAGCG  849
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCATTACCCTCCTGGGTGCCGAGATTAAAGATGTGCATCACAGCG  850

seq1  GGCAGT-GGTGGTGTATGCC  868
      |||||| |||||||||||||
seq2  GGCAGTGGGTGGTGTATGCC  870

seq1: chr3_90121938_90122784
seq2: B6Ng01-334N18.g_68_919 (reverse)

seq1  CCCCCT-TTTTATGTTTCT-TATCTTGATGCAGGGTTTAGTAAGTTATAC  48
      ||||||  ||||||||| |  |||||||||||| |  |||||||  ||||
seq2  CCCCCTAATTTATGTTTGTGCATCTTGATGCAGTGAGTAGTAAGAAATAC  50

seq1  AAGCT-GGCTTTGAATTCACTCTGAGGCCTTGGAATGCCCT-TAACCTGT  96
      ||||| ||||||||||||||||||||  ||  | || ||||  | |||||
seq2  AAGCTGGGCTTTGAATTCACTCTGAGCACTCTGTATACCCTCCATCCTGT  100

seq1  GGTTCTC-CTGCTTTCAGTCTCTCT-TGGTAGAGAATAATAGAAGAATGC  144
      |||||||  ||||   ||||||||| ||| ||||||||||||||||||| 
seq2  GGTTCTCAGTGCTAAAAGTCTCTCTCTGGAAGAGAATAATAGAAGAATGT  150

seq1  CATAACAAAGTAAAATCAAGTGTTTAAAAAAGATGTGACATTATTTATTT  194
      |||||||||||||| ||||| ||||||||||||||||||||||||||| |
seq2  CATAACAAAGTAAAGTCAAGGGTTTAAAAAAGATGTGACATTATTTATCT  200

seq1  AGTAGTCACATTATTGACTACTAAAAGTATCTTTTTACCTCCCTATGTGA  244
      ||||||||||  |||||||||||||||||| ||||||||||| |||  ||
seq2  AGTAGTCACACAATTGACTACTAAAAGTATTTTTTTACCTCCGTATTCGA  250

seq1  GGTTGTACTTAGTTGAAGACAAACAAGCATTTTAAGATGTTTGGGTTGAG  294
      |||||||| |||||||| |||||||||||||||||||||||||||| |||
seq2  GGTTGTACGTAGTTGAATACAAACAAGCATTTTAAGATGTTTGGGTAGAG  300

seq1  TTGTATTTTGAGGGGGGGATTGTTGTTTTTAAATTTAATTTTGTGTGTGT  344
       ||||||||||||||||||| ||||||||||||||||||||||     ||
seq2  CTGTATTTTGAGGGGGGGATCGTTGTTTTTAAATTTAATTTTGGTCCAGT  350

seq1  CTGTTGGTTGAGAATGTACACATGAGTCTGGTGTCTACAGAGGTCAGAGG  394
      | |||||||||||||||||||| || | ||||||||||||||||||||||
seq2  CAGTTGGTTGAGAATGTACACAAGACTTTGGTGTCTACAGAGGTCAGAGG  400

seq1  TTTTGGATCCCCATAGAGCTGCTTGGGAACTAGACTTAGATTTTCTTATA  444
      ||| |||||||||||||||  |  ||||||||||||||||||||||||||
seq2  TTTCGGATCCCCATAGAGC-ACACGGGAACTAGACTTAGATTTTCTTATA  449

seq1  AGCAGCAAGTACTCTAAACTGAGCTATCTCTTTGGTCCTGGAGAGGGAGT  494
      |||||||||||||||||||||| |||||| ||||||||||||||||||||
seq2  AGCAGCAAGTACTCTAAACTGATCTATCTATTTGGTCCTGGAGAGGGAGT  499

seq1  GTGTATACATGCACACCAGCTACACCATGCATAGAGATCTGAGGACAACT  544
      ||||||||| || ||||||||||||||| ||||||||| |||||||||||
seq2  GTGTATACAGGCCCACCAGCTACACCATCCATAGAGATATGAGGACAACT  549

seq1  TTCAGGAGTCTGTTCTCTCCTACTGTATGGGTTTGGAGGATAAAACTCAG  594
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  TTCAGGAGTCTGTTGTCTCCTACTGTATGGGTTAGGAGGATAAAACTCAG  599

seq1  GTTATCAGAGGTTATCAGGTTTGGTGGCAAGAACCTTTAGTCACTGAGCC  644
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTTATCAGAGGTTATCAGGTTTGGCGGCAAGAACCTTTAGTCACTGAGCC  649

seq1  ATCTTGAAGGACTTTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTCTCTC  694
      ||||||||||||||| | | | ||||||||||||||||||||||||||||
seq2  ATCTTGAAGGACTTTATGTGTGTCTTTCTCTCTCTCTCTCTCTTTCTCTC  699

seq1  TCTCTCTTTTTTGGAGATGAGTCTTTCTGTAAAGGTCTGGTTTGTCTGGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTTTTTGGAGATGAGTCTTTCTGTAAAGGTCTGGTTTGTCTGGA  749

seq1  ATGTGCTTTGTGGATCAAGCTGGACTTGAACATGTGGCAATCCTTACATC  794
      | || |||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGTTCTTTGTGGATCAAGCTGGACCTGAACATGTGGCAATCCTTACATC  799

seq1  TGTCAGTTTCTGGGATTATGGATATTTGTCATATCTAGCCAAGGATTGAA  844
       |||||||| |||||||||||||||| |||||||||| ||||||||||||
seq2  GGTCAGTTTTTGGGATTATGGATATTCGTCATATCTACCCAAGGATTGAA  849

seq1  TTC  847
      |||
seq2  TTC  852