BAC Information

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BAC

Clone NameB6Ng01-335K24
Chromosome3 (Build37)19 (Build37)
Map Location 77,301,510 - 77,302,70832,848,866 - 32,849,014
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFstl5, LOC100041625, LOC100041635
Downstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479, LOC100041691
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335K24.bB6Ng01-335K24.g
ACCGA120835GA120836
length1,212209
definitionB6Ng01-335K24.b B6Ng01-335K24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,301,510 - 77,302,708)(32,848,866 - 32,849,014)
sequence
gaattcattgcaaaatccttctattctttttacttgaggcctaaacttta
atagctaaaatcatgcagagttgtaaaatagagctaattatcaatgatct
ccccaaaccccttctttgcacaatcaagatgacctctttgtgatgcaatt
tgtattgtcatcttgtgataagattataggttctaccagctccacaccat
ttacattcttttatagaatgtggcctttctttaatgatatgcctcatact
ctatatcttttgttttatttctattttctggcttatttatacaggtattc
tgatgtccctcccccacaagatatccccatatagcatatactgacctttt
acttgatattcttttgtcccaacctcccacacactggaaaacacaggcga
gtactatcccaggtttcatttcaagtcctacttaataaagtattttacta
atttgcatcttgctcacagacaacatctgggtctgtgctaccatattaca
cttggctgcctacccacaggaggtggtttccctcctgaactgtgatgatt
ttaaaacatggtaataagtctcgttaacttatatatttccaaactatgta
ctacacctagaatgtaagcagacatccagaaaatattgaattaactcaag
aataagcaccaaagtgagccttttaattgaaaactgctggactatatcca
ttctaactactgttcattgtaaaggctcccatctcaaatgaaccctgaac
tgttcaacaagttagtagaccagagcactgggaatttagtggaataagca
tagctcaatatctactgttagagatttaaaagaaagtttaagtcccacat
aacacttggaaaagaatcattcttatcctactttttctggtttcttcttt
ctgttgtcaacacacatgctctctctccagctctctctccaagcacatgc
ttcacgtattttctgtttcatacatttcatctttctgctaatatgttctg
gactctcctgtcatgactgctatttgaagtgccatgctaacacctccctt
ttcagttcataggaagtatctgaaattgcaccatatgtactacaactaca
aaaagtggatgcaagacccacctagctgcctgcttattaaatgttacaga
acaacatggcagtcttaattgtgtgtgggacagaaagttcttagagaaaa
gagaggccaatc

tttgtttagctctgcaccccatttcttattacagtgtttatttcaaaatt
tttattaattgaaagctgggtgtggtggtgcacgcctttaatcccagcac
tcaggaggcagaggcaggcagatttctgagttcgaggcaagcctggtcta
caaagtgtgttctaggacagccagggctgcacagagaaaccctgtctcga
aataaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_77301510_77302708
seq2: B6Ng01-335K24.b_45_1256

seq1  GAATTCATTGCAAAATCCTTCTATTCTTTTTACTTGAGGCCTAAACTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCAAAATCCTTCTATTCTTTTTACTTGAGGCCTAAACTTTA  50

seq1  ATAGCTAAAATCATGCAGAGTTGTAAAATAGAGCTAATTATCAATGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTAAAATCATGCAGAGTTGTAAAATAGAGCTAATTATCAATGATCT  100

seq1  CCCCAAACCCCTTCTTTGCACAATCAAGATGACCTCTTTGTGATGCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAACCCCTTCTTTGCACAATCAAGATGACCTCTTTGTGATGCAATT  150

seq1  TGTATTGTCATCTTGTGATAAGATTATAGGTTCTACCAGCTCCACACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGTCATCTTGTGATAAGATTATAGGTTCTACCAGCTCCACACCAT  200

seq1  TTACATTCTTTTATAGAATGTGGCCTTTCTTTAATGATATGCCTCATACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTCTTTTATAGAATGTGGCCTTTCTTTAATGATATGCCTCATACT  250

seq1  CTATATCTTTTGTTTTATTTCTATTTTCTGGCTTATTTATACAGGTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCTTTTGTTTTATTTCTATTTTCTGGCTTATTTATACAGGTATTC  300

seq1  TGATGTCCCTCCCCCACAAGATATCCCCATATAGCATATACTGACCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCCCTCCCCCACAAGATATCCCCATATAGCATATACTGACCTTTT  350

seq1  ACTTGATATTCTTTTGTCCCAACCTCCCACACACTGGAAAACACAGGCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATATTCTTTTGTCCCAACCTCCCACACACTGGAAAACACAGGCGA  400

seq1  GTACTATCCCAGGTTTCATTTCAAGTCCTACTTAATAAAGTATTTTACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTATCCCAGGTTTCATTTCAAGTCCTACTTAATAAAGTATTTTACTA  450

seq1  ATTTGCATCTTGCTCACAGACAACATCTGGGTCTGTGCTACCATATTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATCTTGCTCACAGACAACATCTGGGTCTGTGCTACCATATTACA  500

seq1  CTTGGCTGCCTACCCACAGGAGGTGGTTTCCCTCCTGAACTGTGATGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTGCCTACCCACAGGAGGTGGTTTCCCTCCTGAACTGTGATGATT  550

seq1  TTAAAACATGGTAATAAGTCTCGTTAACTTATATATTTCCAAACTATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACATGGTAATAAGTCTCGTTAACTTATATATTTCCAAACTATGTA  600

seq1  CTACACCTAGAATGTAAGCAGACATCCAGAAAATATTGAATTAACTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACCTAGAATGTAAGCAGACATCCAGAAAATATTGAATTAACTCAAG  650

seq1  AATAAGCACCAAAGTGAGCCTTTTAATTGAAAACTGCTGGACTATATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCACCAAAGTGAGCCTTTTAATTGAAAACTGCTGGACTATATCCA  700

seq1  TTCTAACTACTGTTCATTGTAAAGGCTCCCATCTCAAATGAACCCTGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACTACTGTTCATTGTAAAGGCTCCCATCTCAAATGAACCCTGAAC  750

seq1  TGTTCAACAAGTTAGTAGACCAGAGCACTGGGAATTTAGTGGAATAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAACAAGTTAGTAGACCAGAGCACTGGGAATTTAGTGGAATAAGCA  800

seq1  TAGCTCAATATCTACTGTTAGAGATTTAAAAGAAAGTTTAAGTCCCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCAATATCTACTGTTAGAGATTTAAAAGAAAGTTTAAGTCCCACAT  850

seq1  AACACTTGGAAAAGAATCATTCTTATCCTACTTTTTCTGGTTTCTTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGGAAAAGAATCATTCTTATCCTACTTTTTCTGGTTTCTTCTTT  900

seq1  CTGTTGTCAACACACATGCTCTCTCTCCAGCTCTCTCTCCAAGCACATGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTCAACACACATGCTCTCTCTCCAGCTCTCTCTCCAAGCACATGC  950

seq1  TTCACGTATTTTCTGTTTCATACATTTCATCTTTCTTGCTAATATGTTCT  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCACGTATTTTCTGTTTCATACATTTCATCTTTC-TGCTAATATGTTCT  999

seq1  GGACTCTCCTGTCATGACTGCTAATTGAAGTGCCATGCTAACA-CTCCCT  1049
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  GGACTCTCCTGTCATGACTGCTATTTGAAGTGCCATGCTAACACCTCCCT  1049

seq1  TTTCAGTTCATAGGGAAAGTATCTGAAATTGCACCCATATGTACTACCAA  1099
      ||||||||||||||  ||||||||||||||||| |||||||||||||  |
seq2  TTTCAGTTCATAGG--AAGTATCTGAAATTGCA-CCATATGTACTAC--A  1094

seq1  ACTAC-AAAAGT-GATGCAAGACC--ACTAGCTG-CTGC-TATTAAATG-  1142
      ||||| |||||| |||||||||||   ||||||| |||| ||||||||| 
seq2  ACTACAAAAAGTGGATGCAAGACCCACCTAGCTGCCTGCTTATTAAATGT  1144

seq1  TACAGGACAACAT-GCAGTCTAA----TGTGTTGGACAG-AAGTT-TTAG  1185
      ||||| ||||||| ||||||| |    ||||| |||||| ||||| ||||
seq2  TACAGAACAACATGGCAGTCTTAATTGTGTGTGGGACAGAAAGTTCTTAG  1194

seq1  -GAAAAGA---GCCAATC  1199
       |||||||   |||||||
seq2  AGAAAAGAGAGGCCAATC  1212


seq1: chr19_32848866_32849014
seq2: B6Ng01-335K24.g_134_280 (reverse)

seq1  TTATTTATTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGG  50
      |||||||  ||| ||||||||||||||||||| ||||||||||||||| |
seq2  TTATTTA--TTTCGAGACAGGGTTTCTCTGTGCAGCCCTGGCTGTCCTAG  48

seq1  AACTCACTCGGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCT  100
      ||| ||||  |||||||||||| |||||||||||||||||| ||||||||
seq2  AACACACTTTGTAGACCAGGCTTGCCTCGAACTCAGAAATCTGCCTGCCT  98

seq1  CTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCAACACACCCAGCTT  149
      ||||||||  |||||||||||||||||||||| ||| ||||||||||||
seq2  CTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCACCACCACACCCAGCTT  147


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