BAC Information

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BAC

Clone NameB6Ng01-335O11
Chromosome3 (Build37)
Map Location 89,765,090 - 89,895,518
singlet/doubletdoublet
Overlap geneAtp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3
Upstream geneAsh1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra
Downstream geneNup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335O11.bB6Ng01-335O11.g
ACCGA120985GA120986
length1,1521,075
definitionB6Ng01-335O11.b B6Ng01-335O11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,894,369 - 89,895,518)(89,765,090 - 89,766,160)
sequence
gaattcatcatttagtccaagatggcctcgaattctagaaatccaaccac
tcacgccaggactaaaggtgaacgccaccatgactgctctgttttgcttt
tgagactcagtcttgccacccagcatcagctggccttgaacctgcaccaa
tccttctgtgttagcatctaggtggcttggcttacagctgtgtgtcaccc
tgcctagttttgagaaaccaaagtgagaactcagtgagaaggagagctgg
gcacagtggcacgtggctgtcactttagaggttggagtctaaggtcgata
tggcttatataagaccctgttagaactagatgggagaataagagaaaata
caaattacatgaagattaaaaggctccccaaacagataaccagcaccaac
atttgtttgcaagtgggtggagactgcagattcaaggacaaaacccaagc
acagtcttcacccacccgccaggattccaaccccacgctgctgcctgata
gttacatagaggtcatgtcattgagggcgtggtccagctcgtcgctaatg
gccttgtacttcagtttctgggcatagagctcgtctggacaggcacagga
accacagggatgatggaggggataaagtgaaaggtgtcagaagcagatga
agagagggagtcattagaaaataggaaaactgtgaccataggtctaaatc
caggaaggaaaaacaaactattctggaaaaaaacataaaaactatcctgg
cagccatgaccgacctctttccccaacagctaatcgtacttcctgatgtc
tcgtcaagtcaactgcgggcaagaactgagaacctgaacacatgccagca
ctgcaggcacccaaagccacctctcccacccaattctgaagcagtgctaa
cacttaaggaagacagagaagggagaagggcacagcagttctagtgactc
tcctctgcctactcaagggtggtcaccactccggttctacggccgctccc
ggaaccttcccagaccatcacacaaggagcgtatcaagggaagttagtct
caaagcaaggacttggttctttggttagtgggacggacaagcctgcccaa
acctaccaagaacagaagccctgaacctgtttgaatcgctcaagctgcaa
ga
gaattcttcactgcccacatcagatgccttctgaaaactatcctagctct
gctctgccctgccctccccacctcctccaactccactaacgctcaccttc
ctgcactgacatgaaaacctgagagaaaagggaggccttccctctgtcct
ggaaaacatgagggaactgagaatttacagaagccagagcctatagggaa
agggcctagaagagaccagatataacaagtgagacgtagctctcaaggta
tccacctgaggaacaatggctgtcccgtgtgccgtcctagtggcaatgac
agctgctgccggtactagaaagcagaatgtgccctagtgggttgggtgga
gagctaggaaccaggaaacacctggcagagcatcaggaagcagggtggcc
atgttccacccttctagaaagctcctaatgtccccacccctactttcatt
actggggcttccattatcacctcctccccaggagggttctcatcagacac
atggccaccacttcctgcagacagtcctcaaaccatttcctctcaatctt
gtccagccaccctctggggccatcagagaggtcttcccagtcctgctaag
gggtcaccattctctctcaccccgagtctactccagtcagaatgacacta
agaacaggctcaagagagcctctgcttcctcccaccctctcatgtacttt
ctcctaaaaaggtgtaagtccaggccacaggaaactcctcttccttcaga
tggaaagccttgcccctccttagttcccttgcctctagcctgtcagtccc
aagagatactaaattgcctgtctgcccaatctctgtaattactgactgtg
gtcctagcccagccatcctctcccgctctcccttcactaatgtgcactcc
ctccttgacctcagagcagacagttcctgaggggcactaagtccttttcc
ctcctgactctccacactgtggccagcaacagtgggctgcccccttgggc
tctggaagaaaaaactcattgaacaattttggcgatgcctaacctcttcc
agggccccagccagggtctccaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89894369_89895518
seq2: B6Ng01-335O11.b_49_1200 (reverse)

seq1  TCTTGCAGCCTGAACAGATCAAACAG--TCAGGGCTTCTTGTTCTT-GTA  47
      ||||||||| ||| |   ||||||||  |||||||||| ||||||| |||
seq2  TCTTGCAGCTTGAGCGATTCAAACAGGTTCAGGGCTTC-TGTTCTTGGTA  49

seq1  G--TTTGGCAGCTTTGTCTGTCCACCTTAACAAAGAAACAAGTCCTTTGC  95
      |  || |||||  ||||| ||||  || | ||||||| ||||||| ||||
seq2  GGTTTGGGCAGGCTTGTCCGTCCCACTAACCAAAGAACCAAGTCC-TTGC  98

seq1  TTTGAGACTAACTT-CCTTGATACGCTCTTGGTGTTGGATGGTCTGGGAA  144
      |||||||||||||| ||||||||||||| | ||||  |||||||||||||
seq2  TTTGAGACTAACTTCCCTTGATACGCTCCTTGTGT--GATGGTCTGGGAA  146

seq1  AGGGTTCGGGGAGGCGGCCGTAGAACCGGAGTGGTGACCACCC-TGAGTA  193
        ||||| |||| |||||||||||||||||||||||||||||| ||||||
seq2  --GGTTCCGGGA-GCGGCCGTAGAACCGGAGTGGTGACCACCCTTGAGTA  193

seq1  GGCAGAGGAGAGTCACTAAGACTGCTGTG-CCTTCTCCCTTCTCTGTCTT  242
      ||||||||||||||||||  ||||||||| ||||||||||||||||||||
seq2  GGCAGAGGAGAGTCACTAGAACTGCTGTGCCCTTCTCCCTTCTCTGTCTT  243

seq1  CCTTAAGTGTTAGCACTGCTTCAGAATTGGGTGGGAGAGGTGGCTTTGGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGTGTTAGCACTGCTTCAGAATTGGGTGGGAGAGGTGGCTTTGGG  293

seq1  TGCCTGCAGTGCTGGCATGTGTTCAGGTTCTCAGTTCTTG-CCGCAGTTG  341
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGCCTGCAGTGCTGGCATGTGTTCAGGTTCTCAGTTCTTGCCCGCAGTTG  343

seq1  ACTTGACGAGACATCAGGAAGTACGATTAGCTGTTGGGGAAAGAGGTCGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACGAGACATCAGGAAGTACGATTAGCTGTTGGGGAAAGAGGTCGG  393

seq1  TCATGGCTGCCAGGATAGTTTTTATGTTTTTTTCCAGAATAGTTTGTTTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCTGCCAGGATAGTTTTTATGTTTTTTTCCAGAATAGTTTGTTTT  443

seq1  TCCTTCCTGGATTTAGACCTATGGTCACAGTTTTCCTATTTTCTAATGAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTGGATTTAGACCTATGGTCACAGTTTTCCTATTTTCTAATGAC  493

seq1  TCCCTCTCTTCATCTGCTTCTGACACCTTTCACTTTATCCCCTCCATCAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCTTCATCTGCTTCTGACACCTTTCACTTTATCCCCTCCATCAT  543

seq1  CCCTGTGGTTCCTGTGCCTGTCCAGACGAGCTCTATGCCCAGAAACTGAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGGTTCCTGTGCCTGTCCAGACGAGCTCTATGCCCAGAAACTGAA  593

seq1  GTACAAGGCCATTAGCGACGAGCTGGACCACGCCCTCAATGACATGACCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGGCCATTAGCGACGAGCTGGACCACGCCCTCAATGACATGACCT  643

seq1  CTATGTAACTATCAGGCAGCAGCGTGGGGTTGGAATCCTGGCGGGTGGGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAACTATCAGGCAGCAGCGTGGGGTTGGAATCCTGGCGGGTGGGT  693

seq1  GAAGACTGTGCTTGGGTTTTGTCCTTGAATCTGCAGTCTCCACCCACTTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTGTGCTTGGGTTTTGTCCTTGAATCTGCAGTCTCCACCCACTTG  743

seq1  CAAACAAATGTTGGTGCTGGTTATCTGTTTGGGGAGCCTTTTAATCTTCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAATGTTGGTGCTGGTTATCTGTTTGGGGAGCCTTTTAATCTTCA  793

seq1  TGTAATTTGTATTTTCTCTTATTCTCCCATCTAGTTCTAACAGGGTCTTA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTGTATTTTCTCTTATTCTCCCATCTAGTTCTAACAGGGTCTTA  843

seq1  TATAAGCCATATCGACCTTAGACTCCAACCTCTAAAGTGACAGCCACGTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCCATATCGACCTTAGACTCCAACCTCTAAAGTGACAGCCACGTG  893

seq1  CCACTGTGCCCAGCTCTCCTTCTCACTGAGTTCTCACTTTGGTTTCTCAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTGCCCAGCTCTCCTTCTCACTGAGTTCTCACTTTGGTTTCTCAA  943

seq1  AACTAGGCAGGGTGACACACAGCTGTAAGCCAAGCCACCTAGATGCTAAC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGCAGGGTGACACACAGCTGTAAGCCAAGCCACCTAGATGCTAAC  993

seq1  ACAGAAGGATTGGTGCAGGTTCAAGGCCAGCTGATGCTGGGTGGCAAGAC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGATTGGTGCAGGTTCAAGGCCAGCTGATGCTGGGTGGCAAGAC  1043

seq1  TGAGTCTCAAAAGCAAAACAGAGCAGTCATGGTGGCGTTCACCTTTAGTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTCAAAAGCAAAACAGAGCAGTCATGGTGGCGTTCACCTTTAGTC  1093

seq1  CTGGCGTGAGTGGTTGGATTTCTAGAATTCGAGGCCATCTTGGACTAAAT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGTGAGTGGTTGGATTTCTAGAATTCGAGGCCATCTTGGACTAAAT  1143

seq1  GATGAATTC  1150
      |||||||||
seq2  GATGAATTC  1152

seq1: chr3_89765090_89766160
seq2: B6Ng01-335O11.g_69_1143

seq1  GAATTCTTCACTGCCCACATCAGATGCCTTCTGAAAACTATCCTAGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACTGCCCACATCAGATGCCTTCTGAAAACTATCCTAGCTCT  50

seq1  GCTCTGCCCTGCCCTCCCCACCTCCTCCAACTCCACTAACGCTCACCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCCTGCCCTCCCCACCTCCTCCAACTCCACTAACGCTCACCTTC  100

seq1  CTGCACTGACATGAAAACCTGAGAGAAAAGGGAGGCCTTCCCTCTGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTGACATGAAAACCTGAGAGAAAAGGGAGGCCTTCCCTCTGTCCT  150

seq1  GGAAAACATGAGGGAACTGAGAATTTACAGAAGCCAGAGCCTATAGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACATGAGGGAACTGAGAATTTACAGAAGCCAGAGCCTATAGGGAA  200

seq1  AGGGCCTAGAAGAGACCAGATATAACAAGTGAGACGTAGCTCTCAAGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTAGAAGAGACCAGATATAACAAGTGAGACGTAGCTCTCAAGGTA  250

seq1  TCCACCTGAGGAACAATGGCTGTCCCGTGTGCCGTCCTAGTGGCAATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGAGGAACAATGGCTGTCCCGTGTGCCGTCCTAGTGGCAATGAC  300

seq1  AGCTGCTGCCGGTACTAGAAAGCAGAATGTGCCCTAGTGGGTTGGGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGCCGGTACTAGAAAGCAGAATGTGCCCTAGTGGGTTGGGTGGA  350

seq1  GAGCTAGGAACCAGGAAACACCTGGCAGAGCATCAGGAAGCAGGGTGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGGAACCAGGAAACACCTGGCAGAGCATCAGGAAGCAGGGTGGCC  400

seq1  ATGTTCCACCCTTCTAGAAAGCTCCTAATGTCCCCACCCCTACTTTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCACCCTTCTAGAAAGCTCCTAATGTCCCCACCCCTACTTTCATT  450

seq1  ACTGGGGCTTCCATTATCACCTCCTCCCCAGGAGGGTTCTCATCAGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGCTTCCATTATCACCTCCTCCCCAGGAGGGTTCTCATCAGACAC  500

seq1  ATGGCCACCACTTCCTGCAGACAGTCCTCAAACCATTTCCTCTCAATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCACCACTTCCTGCAGACAGTCCTCAAACCATTTCCTCTCAATCTT  550

seq1  GTCCAGCCACCCTCTGGGGCCATCAGAGAGGTCTTCCCAGTCCTGCTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCCACCCTCTGGGGCCATCAGAGAGGTCTTCCCAGTCCTGCTAAG  600

seq1  GGGTCACCATTCTCTCTCACCCCGAGTCTACTCCAGTCAGAATGACACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACCATTCTCTCTCACCCCGAGTCTACTCCAGTCAGAATGACACTA  650

seq1  AGAACAGGCTCAAGAGAGCCTCTGCTTCCTCCCACCCTCTCATGTACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGGCTCAAGAGAGCCTCTGCTTCCTCCCACCCTCTCATGTACTTT  700

seq1  CTCCTAAAAAGGTGTAAGTCCAGGCCACAGGAAACTCCTCTTCCTTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAAAAGGTGTAAGTCCAGGCCACAGGAAACTCCTCTTCCTTCAGA  750

seq1  TGGAAAGCCTTGCCCCTCCTTAGTTCCCTTGCCTCTAGCCTGTCAGTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGCCTTGCCCCTCCTTAGTTCCCTTGCCTCTAGCCTGTCAGTCCC  800

seq1  AAGAGATACT-AATTGCCTGTCTGCCCAATCTCTGTAATTACTGACTGTG  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATACTAAATTGCCTGTCTGCCCAATCTCTGTAATTACTGACTGTG  850

seq1  GTCCTAGCCCAGCCATCCTCTCCCGCTCTCCCTTCACTAATGTGCACTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGCCCAGCCATCCTCTCCCGCTCTCCCTTCACTAATGTGCACTCC  900

seq1  CTCCTTGACCTCAGAGCAGACAG-TCCTGAGGGGCACTAAGTCCTTTTCA  948
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  CTCCTTGACCTCAGAGCAGACAGTTCCTGAGGGGCACTAAGTCCTTTTCC  950

seq1  CTCCTGACTCTCCACAACTGTGGCAAGCAACAGT-GGCTGCCCCCTT-GG  996
      ||||||||||||||| |||||||| ||||||||| |||||||||||| ||
seq2  CTCCTGACTCTCCAC-ACTGTGGCCAGCAACAGTGGGCTGCCCCCTTGGG  999

seq1  CTCTGGAAGAAAAACCTCA-TGAACAA-TTTGGCGATGCCAAACCCTCTT  1044
      |||||||||||||| |||| ||||||| |||||||||||| || ||||||
seq2  CTCTGGAAGAAAAAACTCATTGAACAATTTTGGCGATGCCTAA-CCTCTT  1048

seq1  CCAGGGCCCCAGCCAGGGTCTCCACCC  1071
      |||||||||||||||||||||||||||
seq2  CCAGGGCCCCAGCCAGGGTCTCCACCC  1075