BAC Information

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BAC

Clone NameB6Ng01-336A19
Chromosome3 (Build37)
Map Location 150,720,075 - 150,861,211
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040633, LOC100040455, LOC100040463, LOC623554
Downstream geneEltd1, Ifi44, H28, Ptgfr, LOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336A19.bB6Ng01-336A19.g
ACCGA121095GA121096
length1,1391,173
definitionB6Ng01-336A19.b B6Ng01-336A19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,860,057 - 150,861,211)(150,720,075 - 150,721,238)
sequence
gaattctgggattatgattctgtttgatgacgtgctgtacacacctctaa
actctgagaaccaatgagtgaaggagagcattcctggctcctggaggttg
aggatactgtgtgtgttctcacttagtagataacagaaaagaagtcaggc
atgtttcagaataaaacaggatgccagagtgcccttctgttagcttcata
ggcagcaaatgagttgcattgtagctatgagaaatatctcctcatctatg
taaccatattgcaaatctgtgtgaagatgatcacaaactatagagccaag
gaaacctaagcaattgaggggaagaaaaagttactgaacaaaatctgtga
acaaaggcaatattcaaatgacatatttccctaacaggtatctatttggt
tctcttcttctaatttagtctttgcatggggctcttggaaagctgatagg
aaactgaaagcacattctaccttattctgcataaattgtaacacttgaat
gacaaaatcccatgggctcacatagtattggtctcagatcccacgtatgt
gaagcttacatttggaccccatttgctgctgctttgcaggtaacctgaga
aagaactgaggagtggattggtttttttttgttttttttttttttaagat
gacgcattttctcctgatgatgctgcatgagcacgtaggaagccaactgc
cacaggaccaaaagatcatgaagcatcccatttatagcatcatatctcag
cacttacatcatcatatctcagcactttgcgtcattgttttccaagaaat
ctttccaaagggaatggaataatacttgagtatcaagtaagaaaaatctg
tgaaatgatagatacaattcatgatagcaagaagtttctgtgtagatcaa
agaggcactgaaccgtctaagtggacacagggaggttgttaatgtctgga
gaaagagcaacatagcagtgaagagatacaaacccctttccttgtcttta
gtccacagaagcattaatctgactgagcatgaatcagctcttggttcagg
aatatggtctttccaccaagggacatgaggtggtgagttcatctattgtg
atgggattctgcagcttgttcctacaattcttttttttt

gaattcacagtctttctctctcagacagttgtatgctatgactatcagca
tgtcccaccatatccaggtctctttcctaattcccaatatactaaagata
ttgcacctatagtttgtttacatactctctgcagatgctggtaaataggt
ggggtagtcttaaaaacacacaaaaggtctctatatatctcagatgcatg
tcagtatttcatagagaggttagggcaacctatgaaaagcccattgtgca
acataagaggaagaagacaatctcctgcacagcgtcttctcatgctaatc
cctcatcatatggaccaagagcgataattgggtccctcctatcaatgggc
aatgagtcctttaaaatgaattttaaaactctattttgtcaaagattttt
ctattgtgattactataattttacaaaacactgttttaagtgagaattgt
aactgccagatgcatcgttcacttgtttagcattcagaagaaagcataaa
catgtctctgcgtctgctttcagcttgatttaattagtacccggatggcc
atggccattgaaatcattctgttcagttcagattttccactaagtctgcc
aaaggtcttttactcagaaaggagatttctgtgttccaatgaaaataaag
aggcagaagaaaagtaactgttaaaaactatattttgtagttaaatataa
aggaacagtgtgctctgctgagctcttagggtctcctacttctcctttta
aaaatattttaatgaaatggtgtcttgactctgaagtcatgcttaaattg
ggtccattgaataataaattcctttattctttcttcctttcttcttttct
ccctttcttcctatcttccatttcttttttcttcatctctgttgtaaaga
gtaggttttttttttccattttttattaggtatttagctcatttacattt
ccaatgctataccaaaaggtttttttttttgttgttatttcttcagagta
gtaagttgcatttcatctattttaatatcgttactgttttcaggaaaaac
attttattacattttttagtacagtcattctactcaaatatttagtagtt
ttattgaattgtccttgttcttcgtctccattgtatttcctttcaggtcc
aattccacccttattaatttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_150860057_150861211
seq2: B6Ng01-336A19.b_49_1187 (reverse)

seq1  AAAAAAAAAGAATGTGAGGAACAAGACTTGCCAGGAATTCCCATCACCAT  50
      |||||||||||||   ||||||||| ||   |||  | ||||||||| ||
seq2  AAAAAAAAAGAATTGTAGGAACAAG-CT--GCAG--AATCCCATCACAAT  45

seq1  AGATGGAACTCACCACCCTCATGTCTCCCTTGGTGTGAAAGACCATATTC  100
      |||| |||||||||| |||||||  |||||||||| ||||||||||||| 
seq2  AGAT-GAACTCACCA-CCTCATG--TCCCTTGGTG-GAAAGACCATATT-  89

seq1  CCTGAACCAAGAGCTGATTCAATGCTTCAGTCAGAATTAAATGCTTCTGT  150
      |||||||||||||||||||| |||| |||||||||  | |||||||||||
seq2  CCTGAACCAAGAGCTGATTC-ATGC-TCAGTCAGA--TTAATGCTTCTGT  135

seq1  GGGAACTAAAGACAAGGAAAGGGGTTTGTATCTCTTCACTGCTATGTTGC  200
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG--ACTAAAGACAAGGAAAGGGGTTTGTATCTCTTCACTGCTATGTTGC  183

seq1  TC-TTCTCCAGACATTAACAACCTCCCTGTGTCCACTTAGACGGTTCAGT  249
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCCAGACATTAACAACCTCCCTGTGTCCACTTAGACGGTTCAGT  233

seq1  GCCTCTTTGATCTACACAGAAACTTCTTGCTATCATGAATTGTATCTATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTTGATCTACACAGAAACTTCTTGCTATCATGAATTGTATCTATC  283

seq1  ATTTCACAGATTTTTCTTACTTGATACTCAAGTATTATTCCATTCCCTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACAGATTTTTCTTACTTGATACTCAAGTATTATTCCATTCCCTTT  333

seq1  GGAAAGATTTCTTGGAAAACAATGACGCAAAGTGCTGAGATATGATGATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGATTTCTTGGAAAACAATGACGCAAAGTGCTGAGATATGATGATG  383

seq1  TAAGTGCTGAGATATGATGCTATAAATGGGATGCTTCATGATCTTTTGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCTGAGATATGATGCTATAAATGGGATGCTTCATGATCTTTTGGT  433

seq1  CCTGTGGCAGTTGGCTTCCTACGTGCTCATGCAGCATCATCAGGAGAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGCAGTTGGCTTCCTACGTGCTCATGCAGCATCATCAGGAGAAAA  483

seq1  TGCGTCATCTTAAAAAAAAAAAAAACAAAAAAAAACCAATCCACTCCTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCATCTTAAAAAAAAAAAAAACAAAAAAAAACCAATCCACTCCTCA  533

seq1  GTTCTTTCTCAGGTTACCTGCAAAGCAGCAGCAAATGGGGTCCAAATGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTCTCAGGTTACCTGCAAAGCAGCAGCAAATGGGGTCCAAATGTA  583

seq1  AGCTTCACATACGTGGGATCTGAGACCAATACTATGTGAGCCCATGGGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCACATACGTGGGATCTGAGACCAATACTATGTGAGCCCATGGGAT  633

seq1  TTTGTCATTCAAGTGTTACAATTTATGCAGAATAAGGTAGAATGTGCTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATTCAAGTGTTACAATTTATGCAGAATAAGGTAGAATGTGCTTT  683

seq1  CAGTTTCCTATCAGCTTTCCAAGAGCCCCATGCAAAGACTAAATTAGAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCTATCAGCTTTCCAAGAGCCCCATGCAAAGACTAAATTAGAAG  733

seq1  AAGAGAACCAAATAGATACCTGTTAGGGAAATATGTCATTTGAATATTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAACCAAATAGATACCTGTTAGGGAAATATGTCATTTGAATATTGC  783

seq1  CTTTGTTCACAGATTTTGTTCAGTAACTTTTTCTTCCCCTCAATTGCTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCACAGATTTTGTTCAGTAACTTTTTCTTCCCCTCAATTGCTTA  833

seq1  GGTTTCCTTGGCTCTATAGTTTGTGATCATCTTCACACAGATTTGCAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCTTGGCTCTATAGTTTGTGATCATCTTCACACAGATTTGCAATA  883

seq1  TGGTTACATAGATGAGGAGATATTTCTCATAGCTACAATGCAACTCATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACATAGATGAGGAGATATTTCTCATAGCTACAATGCAACTCATTT  933

seq1  GCTGCCTATGAAGCTAACAGAAGGGCACTCTGGCATCCTGTTTTATTCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTATGAAGCTAACAGAAGGGCACTCTGGCATCCTGTTTTATTCTG  983

seq1  AAACATGCCTGACTTCTTTTCTGTTATCTACTAAGTGAGAACACACACAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCCTGACTTCTTTTCTGTTATCTACTAAGTGAGAACACACACAG  1033

seq1  TATCCTCAACCTCCAGGAGCCAGGAATGCTCTCCTTCACTCATTGGTTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCAACCTCCAGGAGCCAGGAATGCTCTCCTTCACTCATTGGTTCT  1083

seq1  CAGAGTTTAGAGGTGTGTACAGCACGTCATCAAACAGAATCATAATCCCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTAGAGGTGTGTACAGCACGTCATCAAACAGAATCATAATCCCA  1133

seq1  GAATTC  1155
      ||||||
seq2  GAATTC  1139


seq1: chr3_150720075_150721238
seq2: B6Ng01-336A19.g_67_1239

seq1  GAATTCACAGTCTTTCTCTCTCAGACAGTTGTATGCTATGACTATCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTCTTTCTCTCTCAGACAGTTGTATGCTATGACTATCAGCA  50

seq1  TGTCCCACCATATCCAGGTCTCTTTCCTAATTCCCAATATACTAAAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCACCATATCCAGGTCTCTTTCCTAATTCCCAATATACTAAAGATA  100

seq1  TTGCACCTATAGTTTGTTTACATACTCTCTGCAGATGCTGGTAAATAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCTATAGTTTGTTTACATACTCTCTGCAGATGCTGGTAAATAGGT  150

seq1  GGGGTAGTCTTAAAAACACACAAAAGGTCTCTATATATCTCAGATGCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAGTCTTAAAAACACACAAAAGGTCTCTATATATCTCAGATGCATG  200

seq1  TCAGTATTTCATAGAGAGGTTAGGGCAACCTATGAAAAGCCCATTGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATTTCATAGAGAGGTTAGGGCAACCTATGAAAAGCCCATTGTGCA  250

seq1  ACATAAGAGGAAGAAGACAATCTCCTGCACAGCGTCTTCTCATGCTAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGAGGAAGAAGACAATCTCCTGCACAGCGTCTTCTCATGCTAATC  300

seq1  CCTCATCATATGGACCAAGAGCGATAATTGGGTCCCTCCTATCAATGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCATATGGACCAAGAGCGATAATTGGGTCCCTCCTATCAATGGGC  350

seq1  AATGAGTCCTTTAAAATGAATTTTAAAACTCTATTTTGTCAAAGATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTCCTTTAAAATGAATTTTAAAACTCTATTTTGTCAAAGATTTTT  400

seq1  CTATTGTGATTACTATAATTTTACAAAACACTGTTTTAAGTGAGAATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTGATTACTATAATTTTACAAAACACTGTTTTAAGTGAGAATTGT  450

seq1  AACTGCCAGATGCATCGTTCACTTGTTTAGCATTCAGAAGAAAGCATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCAGATGCATCGTTCACTTGTTTAGCATTCAGAAGAAAGCATAAA  500

seq1  CATGTCTCTGCGTCTGCTTTCAGCTTGATTTAATTAGTACCCGGATGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTCTGCGTCTGCTTTCAGCTTGATTTAATTAGTACCCGGATGGCC  550

seq1  ATGGCCATTGAAATCATTCTGTTCAGTTCAGATTTTCCACTAAGTCTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCATTGAAATCATTCTGTTCAGTTCAGATTTTCCACTAAGTCTGCC  600

seq1  AAAGGTCTTTTACTCAGAAAGGAGATTTCTGTGTTCCAATGAAAATAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCTTTTACTCAGAAAGGAGATTTCTGTGTTCCAATGAAAATAAAG  650

seq1  AGGCAGAAGAAAAGTAACTGTTAAAAACTATATTTTGTAGTTAAATATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAAGAAAAGTAACTGTTAAAAACTATATTTTGTAGTTAAATATAA  700

seq1  AGGAACAGTGTGCTCTGCTGAGCTCTTAGGGTCTCCTACTTCTCCTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGTGTGCTCTGCTGAGCTCTTAGGGTCTCCTACTTCTCCTTTTA  750

seq1  AAAATATTTTAATGAAATGGTGTCTTGACTCTGAAGTCATGCTTAAATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTTAATGAAATGGTGTCTTGACTCTGAAGTCATGCTTAAATTG  800

seq1  GGTCCATTGAATAATAAATTCCTTTATTCTTTCTTCCTTTCTTCTTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATTGAATAATAAATTCCTTTATTCTTTCTTCCTTTCTTCTTTTCT  850

seq1  CCCTTTCTTCCTATCTTCCATTTCTTTTTTCTTCATCTCTGTTGTAAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTTCCTATCTTCCATTTCTTTTTTCTTCATCTCTGTTGTAAAGA  900

seq1  GTAGG-TTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTT  949
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTT  950

seq1  CCAATGCTATACCAAAAGG-TTTTTTTTTTGTTGTTATTTCTTCAGAGTA  998
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCAATGCTATACCAAAAGGTTTTTTTTTTTGTTGTTATTTCTTCAGAGTA  1000

seq1  GTAAGTTGCAATTCATCTATTTAAATATCGTAACTG-TTTCAGAAAAAAC  1047
      |||||||||| ||||||||||| |||||||| |||| |||||| ||||||
seq2  GTAAGTTGCATTTCATCTATTTTAATATCGTTACTGTTTTCAGGAAAAAC  1050

seq1  ATCT--ATACA-TTTTTAGTACAGTCATTCTACTTCAAATA-TTAGTAGT  1093
      || |   |||| ||||||||||||||||||||| ||||||| ||||||||
seq2  ATTTTATTACATTTTTTAGTACAGTCATTCTAC-TCAAATATTTAGTAGT  1099

seq1  TTTATTGAATTTGTCCTTGTTC-TCGTCTCCATTGTATT--CTTTCAAGG  1140
      ||||||||| |||||||||||| ||||||||||||||||  ||||| |||
seq2  TTTATTGAA-TTGTCCTTGTTCTTCGTCTCCATTGTATTTCCTTTC-AGG  1147

seq1  TGTCATTTCCACCC---TTTATTTATT  1164
      |  || ||||||||   || |||||||
seq2  T-CCAATTCCACCCTTATTAATTTATT  1173


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