BAC Information

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BAC

Clone NameB6Ng01-336C05
Chromosome3 (Build37)
Map Location 117,975,928 - 118,065,846
singlet/doubletdoublet
Overlap genenone
Upstream geneD3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneDpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336C05.bB6Ng01-336C05.g
ACCGA121153GA121154
length1,1311,122
definitionB6Ng01-336C05.b B6Ng01-336C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,064,716 - 118,065,846)(117,975,928 - 117,977,062)
sequence
gaattcttctgaagaagtgatgtttgtttcctttcagatatggctagcta
gccaaatttattaagcatgaactaaaatccctggggacagttcatagcta
ggtatgattttgagtgagcccattagacaccagtgtgagagtactgccaa
atacctcgatgatctcgtgttctctgacttgtatcaggtaccaagttttc
actcaagtcattaagtagaggattttatatagctccatgtcagaagattt
gggagagttatacagccagaggctgctttcaaaagccttgtaaaaatatc
aagactctcagcttcctacatgtggtgaggaatagtaccaaatgccaaaa
caactccaggcaataaagatggaaaacaaaactaacccgagaaatagaaa
ataatcattgtcaaggtgtagtttaaaaataaaaaataataataataaaa
agctttttacaaaggaggtggaactttagggagtcttttaaagatttgac
ttagcaaagattgtggaggctaaatgtggaacacagaagaaaagagggac
caagtagacacagaatgatgtcttcaaggggccttgaaataatagaaacg
gggccaggagggtggaaaatgacttgcccagcaaaggtaatctagccttg
gttgtcctgtgcatcctttagaatttgcatccagattgaggaagttctca
tgaatgaggtccctaggctgctataaatgtccatgcctgagtgtataacc
accattcccctctgttcccattagaaagccatggctaggatgtgctgtgc
caaagaaagggaatctgttcttctggcctccctgctgtggtccaccatag
tcaggtgatcaagggcacaggattttattctaggtttagtcagaaaggat
agagcacatgtctgtagacttttgcctcgatattatattttcgatggttc
agttggagcggttacatttggcagcattccttgttagcatttgataaaca
attattgccaaatgttagcaaggaaacctgccaaatgttacagctcagat
ttaactgcggagagagaagaggaaaaaaaagcagtttgaaaagcctttgc
tactgagcctgtttgtctggcatgcagctct

gaattcacagcttctttgacacacactcatggtttaatataaacagcaaa
gcattggaggctcacaaactgctgctgctgacaggagtccaggtaaggaa
ctgtgcgggggagaatgatctaaggcagcagtagcaggggagcattcagt
tggtagtagaaaatgttgcagtaccacagagcatcatacagtaaactgaa
ctgtttcagggagaggcagggagaaaagaacattctatgcatcctatgaa
ttgtgggaaaaggccatgggcaacagaagttcctatgcatgtctaagttt
tatccctaagaggcacgttcctttagtcctaagaaaaaatacttttctat
atcagattagtaaataccataaactatacactagagaagtggctggaggt
gtgtgtgtgtgtgtgtgcaaacaggtatgagtgtgctgaggtgtgaatta
taaagaggaaaaatggaaagtgttgaaattcattttctaagttagccaag
acacctacagaattgggctctagagctgggcgtggtggcgcacgccttta
atcccagcactcgggaagcagaggcaggcagatttctgagtttgaggcca
gcctggtctacagagtgagttctaatacagccagggctatacagagaaac
cctatctcagaaaaaaaaaagaatttggctttattaaaatttaatgtagt
agataatgtagtagttttaaataaggaaataatcattcagtgtcattttt
ttaaaaattgaagctcatgtattgatttctagtttactattgctttcagt
ttgacattttgacactgtaaaagctgtataaaacttatgaattacatgtc
ctacactctcagagcctgggatcgtatatttgacaaatctttaaacattt
ctgaacttcccatgcaggttgtttttctatgaagataattgataagccca
tttgaactaagttttcggggaacagaaaatgctttgttctttattgcata
gcatctggctagatagaatgaacgaatgccaggccagaaatgggagggga
gtgggtagggagcaggccagggaaggcttaggcactttcagataggattg
aaattgtaacaaggaaatatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118064716_118065846
seq2: B6Ng01-336C05.b_47_1177 (reverse)

seq1  AGAGCTGGCATGCCAGAC-AACA-GCTCAGTAGCAAAAGGCTTTTTCAAA  48
      |||||| ||||||||||| |||| |||||||||| |||||| ||||||||
seq2  AGAGCT-GCATGCCAGACAAACAGGCTCAGTAGC-AAAGGC-TTTTCAAA  47

seq1  CTGCTTTTTTTTCCTC-TCTCTCTCCGCAGTTAAATCTGAGCTGTAACAT  97
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGCTTTTTTTTCCTCTTCTCTCTCCGCAGTTAAATCTGAGCTGTAACAT  97

seq1  TTGGCAGGTTTCCTTGCTAACATTTGGCAATAATTGTTTATCAAATGCTA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGGTTTCCTTGCTAACATTTGGCAATAATTGTTTATCAAATGCTA  147

seq1  ACAAGGAATGCTGCCAAATGTAACCGCTCCAACTGAACCATCGAAAATAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAATGCTGCCAAATGTAACCGCTCCAACTGAACCATCGAAAATAT  197

seq1  AATATCGAGGCAAAAGTCTACAGACATGTGCTCTATCCTTTCTGACTAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCGAGGCAAAAGTCTACAGACATGTGCTCTATCCTTTCTGACTAAA  247

seq1  CCTAGAATAAAATCCTGTGCCCTTGATCACCTGACTATGGTGGACCACAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAATAAAATCCTGTGCCCTTGATCACCTGACTATGGTGGACCACAG  297

seq1  CAGGGAGGCCAGAAGAACAGATTCCCTTTCTTTGGCACAGCACATCCTAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGGCCAGAAGAACAGATTCCCTTTCTTTGGCACAGCACATCCTAG  347

seq1  CCATGGCTTTCTAATGGGAACAGAGGGGAATGGTGGTTATACACTCAGGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTTTCTAATGGGAACAGAGGGGAATGGTGGTTATACACTCAGGC  397

seq1  ATGGACATTTATAGCAGCCTAGGGACCTCATTCATGAGAACTTCCTCAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACATTTATAGCAGCCTAGGGACCTCATTCATGAGAACTTCCTCAAT  447

seq1  CTGGATGCAAATTCTAAAGGATGCACAGGACAACCAAGGCTAGATTACCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGCAAATTCTAAAGGATGCACAGGACAACCAAGGCTAGATTACCT  497

seq1  TTGCTGGGCAAGTCATTTTCCACCCTCCTGGCCCCGTTTCTATTATTTCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGGCAAGTCATTTTCCACCCTCCTGGCCCCGTTTCTATTATTTCA  547

seq1  AGGCCCCTTGAAGACATCATTCTGTGTCTACTTGGTCCCTCTTTTCTTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCTTGAAGACATCATTCTGTGTCTACTTGGTCCCTCTTTTCTTCT  597

seq1  GTGTTCCACATTTAGCCTCCACAATCTTTGCTAAGTCAAATCTTTAAAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCACATTTAGCCTCCACAATCTTTGCTAAGTCAAATCTTTAAAAG  647

seq1  ACTCCCTAAAGTTCCACCTCCTTTGTAAAAAGCTTTTTATTATTATTATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTAAAGTTCCACCTCCTTTGTAAAAAGCTTTTTATTATTATTATT  697

seq1  TTTTATTTTTAAACTACACCTTGACAATGATTATTTTCTATTTCTCGGGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTAAACTACACCTTGACAATGATTATTTTCTATTTCTCGGGT  747

seq1  TAGTTTTGTTTTCCATCTTTATTGCCTGGAGTTGTTTTGGCATTTGGTAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTGTTTTCCATCTTTATTGCCTGGAGTTGTTTTGGCATTTGGTAC  797

seq1  TATTCCTCACCACATGTAGGAAGCTGAGAGTCTTGATATTTTTACAAGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTCACCACATGTAGGAAGCTGAGAGTCTTGATATTTTTACAAGGC  847

seq1  TTTTGAAAGCAGCCTCTGGCTGTATAACTCTCCCAAATCTTCTGACATGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAGCAGCCTCTGGCTGTATAACTCTCCCAAATCTTCTGACATGG  897

seq1  AGCTATATAAAATCCTCTACTTAATGACTTGAGTGAAAACTTGGTACCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATATAAAATCCTCTACTTAATGACTTGAGTGAAAACTTGGTACCTG  947

seq1  ATACAAGTCAGAGAACACGAGATCATCGAGGTATTTGGCAGTACTCTCAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGTCAGAGAACACGAGATCATCGAGGTATTTGGCAGTACTCTCAC  997

seq1  ACTGGTGTCTAATGGGCTCACTCAAAATCATACCTAGCTATGAACTGTCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGTCTAATGGGCTCACTCAAAATCATACCTAGCTATGAACTGTCC  1047

seq1  CCAGGGATTTTAGTTCATGCTTAATAAATTTGGCTAGCTAGCCATATCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGATTTTAGTTCATGCTTAATAAATTTGGCTAGCTAGCCATATCTG  1097

seq1  AAAGGAAACAAACATCACTTCTTCAGAAGAATTC  1131
      ||||||||||||||||||||||||||||||||||
seq2  AAAGGAAACAAACATCACTTCTTCAGAAGAATTC  1131


seq1: chr3_117975928_117977062
seq2: B6Ng01-336C05.g_63_1184

seq1  GAATTCACAGCTTCTTTGACACACACTCATGGTTTAATATAAACAGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCTTCTTTGACACACACTCATGGTTTAATATAAACAGCAAA  50

seq1  GCATTGGAGGCTCACAAACTGCTGCTGCTGACAGGAGTCCAGGTAAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGAGGCTCACAAACTGCTGCTGCTGACAGGAGTCCAGGTAAGGAA  100

seq1  CTGTGCGGGGGAGAATGATCTAAGGCAGCAGTAGCAGGGGAGCATTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCGGGGGAGAATGATCTAAGGCAGCAGTAGCAGGGGAGCATTCAGT  150

seq1  TGGTAGTAGAAAATGTTGCAGTACCACAGAGCATCATACAGTAAACTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTAGAAAATGTTGCAGTACCACAGAGCATCATACAGTAAACTGAA  200

seq1  CTGTTTCAGGGAGAGGCAGGGAGAAAAGAACATTCTATGCATCCTATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCAGGGAGAGGCAGGGAGAAAAGAACATTCTATGCATCCTATGAA  250

seq1  TTGTGGGAAAAGGCCATGGGCAACAGAAGTTCCTATGCATGTCTAAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGAAAAGGCCATGGGCAACAGAAGTTCCTATGCATGTCTAAGTTT  300

seq1  TATCCCTAAGAGGCACGTTCCTTTAGTCCTAAGAAAAAATACTTTTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTAAGAGGCACGTTCCTTTAGTCCTAAGAAAAAATACTTTTCTAT  350

seq1  ATCAGATTAGTAAATACCATAAACTATACACTAGAGAAGTGGCTGGAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATTAGTAAATACCATAAACTATACACTAGAGAAGTGGCTGGAGGT  400

seq1  GTGTGTGTGTGTGTGTGCAAACAGGTATGAGTGTGCTGAGGTGTGAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGCAAACAGGTATGAGTGTGCTGAGGTGTGAATTA  450

seq1  TAAAGAGGAAAAATGGAAAGTGTTGAAATTCATTTTCTAAGTTAGCCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGGAAAAATGGAAAGTGTTGAAATTCATTTTCTAAGTTAGCCAAG  500

seq1  ACACCTACAGAATTGGGCTCTAGAGCTGGGCGTGGTGGCGCACGCCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTACAGAATTGGGCTCTAGAGCTGGGCGTGGTGGCGCACGCCTTTA  550

seq1  ATCCCAGCACTCGGGAAGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTCGGGAAGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCA  600

seq1  GCCTGGTCTACAGAGTGAGTTCTAATACAGCCAGGGCTATACAGAGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACAGAGTGAGTTCTAATACAGCCAGGGCTATACAGAGAAAC  650

seq1  CCTATCTCAGAAAAAAAAAAGAATTTGGCTTTATTAAAATTTAATGTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTCAGAAAAAAAAAAGAATTTGGCTTTATTAAAATTTAATGTAGT  700

seq1  AGATAATGTAGTAGTTTTAAATAAGGAAATAATCATTCAGTGTCATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATGTAGTAGTTTTAAATAAGGAAATAATCATTCAGTGTCATTTTT  750

seq1  TTAAAAATTGAAGCTCATGTATTGATTTCTAGTTTACTATTGCTTTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATTGAAGCTCATGTATTGATTTCTAGTTTACTATTGCTTTCAGT  800

seq1  TTGACATTTTGACACTGTAAAAGCTGTATAAAACTTATGAATTACATGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTTTGACACTGTAAAAGCTGTATAAAACTTATGAATTACATGTC  850

seq1  CTACACTCTCAGAGCCTGGGATCGTATATTTGACAAATCTTTAAACATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTCTCAGAGCCTGGGATCGTATATTTGACAAATCTTTAAACATTT  900

seq1  CTGAAACTTCCCATGCAGGTTGTTTTTCTATGAAGATAATTGATAAGCCC  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTG-AACTTCCCATGCAGGTTGTTTTTCTATGAAGATAATTGATAAGCCC  949

seq1  ATTTGAACTAAGTTTTCGGGGAACAGAAAATGCTTTGTTCTTTATTGCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACTAAGTTTTCGGGGAACAGAAAATGCTTTGTTCTTTATTGCAT  999

seq1  AGCATCTGGCTAGATAAGAATGGAAACGGAATGCCAGGGCCAAGAAATGG  1050
      ||||||||||||||| ||||||  ||| ||||||||||  | ||||||||
seq2  AGCATCTGGCTAGAT-AGAATG--AAC-GAATGCCAGG--CCAGAAATGG  1043

seq1  GA-GTGAGTGGGTAGGGGAGCAGGGCAGGGGAAGGGTATAGGGAACTTTC  1099
      || | ||||||||| ||||||||| || ||||||| | || || ||||||
seq2  GAGGGGAGTGGGTA-GGGAGCAGGCCA-GGGAAGGCT-TA-GGCACTTTC  1089

seq1  AGGATAGGATTTGAAATGTAAATAAAGAAAATATCT  1135
      | |||||||||  || |||||   ||| ||||||||
seq2  A-GATAGGATTGAAATTGTAA--CAAGGAAATATCT  1122


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