BAC Information

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BAC

Clone NameB6Ng01-336G02
Chromosome3 (Build37)
Map Location 65,372,576 - 65,509,095
singlet/doubletdoublet
Overlap geneLOC545530, LOC100040978, EG624866
Upstream gene4930518C23Rik, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp
Downstream geneCcnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336G02.bB6Ng01-336G02.g
ACCGA121321GA121322
length1,0201,079
definitionB6Ng01-336G02.b B6Ng01-336G02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,508,581 - 65,509,095)(65,372,576 - 65,373,641)
sequence
gaattcaagacacctaaccaagcatggtggcacacgcctttaattccagc
acttgagaggcagaggcagacaaatttctgagttcaaggccagcctcgtc
tacaaagtgagttccaggacagccagggctacacagagaaaccctgtctc
gaaaaactggaaaaaaaaaaaaaaaaaaaagaattcaaagcaccattcta
atggttatacaaacacctaaaaaagttggcagtgtttatgaatgtattcc
taaacataaagttatactgcataaaagaaaaactactatactaatataat
atgtattaaaaatatgttttaaagacaaggtagaagaaatggatatgtct
attaaaacaaaaacaaagacaacaacaacaaaaaaatccaggcacaaaaa
tccaggaaattcaggaaaatgtgaaaagaccaaatttacaaattattgaa
ctacaggaaagggaagaaaccaagtcaaaggcacagaaaatatttttaac
aaaatcacagaagaaaaattccccaatctaaaagagatgtgcctatcaaa
ctacaagaagcataaaaaacttaaaaaagagtagaacagaaaagctattc
cccatgatacataataatcaaaacactgaatatacagaacaaagatagaa
ttttaaaagccacaggggaaaaacaccaagtaacataaaggcagactcac
tagaacagcagttttcaacatctgaatcacaaccctcaaaagaccataga
aaacaggtatttctaacagtagtaaaaatacagttatgaagtaggaataa
aaataattttatagttggaagtcactataacatgaggaactgtattaaag
tggtcacagcatcaggaaggctgagaactgctacattagaataacacctg
actttttaatggaggtttttgaaagccaaaaccacttgaacagattcttc
taaacatagagaccaggccagactactattacccagcaaaacaatcaatc
acaaacacaggaggaaagaa
gaattccagaaaaaccatgaagttccagagctctttggagacactgacat
tcggaaggggtatacattatctcagcatcatttcaggcattgaggaacat
gtgttgggttgtaaaaatttatacatgatgagactacgccccatcatatt
ccctaccacatatatatatatatatatatatatatacacatatatatgta
tatatatcacatacaccctttctatgtatgaaaactacatcatctcagcg
attctcgacagtctcgagagacatttgtctttcacagtgtcatatctacc
ccccactgagagggattgggatccagaaagatctcttgaaacattattgt
gagggaaagcatgccaaagtttccccatttgtttgcttgtcaaggctaag
aaaacattgaaaccgggacagagggggagcaaacgatgtctgtactgacc
tcaaacccaaagatgatgatgccttttttttttcttcaaagaaagactcc
tttgaatgtgtctctatggtctggagtcagagatgacggcagtggcggca
tgtggtaccccaaagtactcataggcccgcatctctccgtctagactgtc
tagttgactagagaaaaatgcactgtgggaatcaggcacacaccatggag
atgcccaggtttcattatgaacaattagccagcaccctctgtcacagcac
cttctgtcacagaccacccctcctaggtcccacaggactttgacaacatc
taatagagacagctgttccaatagacaacctcgtctgaactacttcagat
gaccttcgaggcctagaacacagaatcttgcaagatggtacatcaaagcc
accggactattgtgcctgctcatacaacaaggtagactttttgtttgggg
gtttgttttgtttgcctgtttgaaacagggtctctatctagccctgggct
aacctggaacttcgctatgtagtccaagatgacttttaaacctacagaga
tcctccctgcctctgccttccgagtctataagatcagcattaccatgcaa
ccaccatggcccagctccttttctttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65508581_65509095
seq2: B6Ng01-336G02.b_46_560 (reverse)

seq1  TTCTTCTGTGATTTTGTTAAAAATATTTTCTGTGCCTTTGACTTGGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGTGATTTTGTTAAAAATATTTTCTGTGCCTTTGACTTGGTTTC  50

seq1  TTCCCTTTCCTGTAGTTCAATAATTTGTAAATTTGGTCTTTTCACATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTCCTGTAGTTCAATAATTTGTAAATTTGGTCTTTTCACATTTT  100

seq1  CCTGAATTTCCTGGATTTTTGTGCCTGGATTTTTTTGTTGTTGTTGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATTTCCTGGATTTTTGTGCCTGGATTTTTTTGTTGTTGTTGTCTT  150

seq1  TGTTTTTGTTTTAATAGACATATCCATTTCTTCTACCTTGTCTTTAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTTTAATAGACATATCCATTTCTTCTACCTTGTCTTTAAAAC  200

seq1  ATATTTTTAATACATATTATATTAGTATAGTAGTTTTTCTTTTATGCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTAATACATATTATATTAGTATAGTAGTTTTTCTTTTATGCAGT  250

seq1  ATAACTTTATGTTTAGGAATACATTCATAAACACTGCCAACTTTTTTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTATGTTTAGGAATACATTCATAAACACTGCCAACTTTTTTAGG  300

seq1  TGTTTGTATAACCATTAGAATGGTGCTTTGAATTCTTTTTTTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTATAACCATTAGAATGGTGCTTTGAATTCTTTTTTTTTTTTTTT  350

seq1  TTTTTCCAGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCAGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCT  400

seq1  GGAACTCACTTTGTAGACGAGGCTGGCCTTGAACTCAGAAATTTGTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCACTTTGTAGACGAGGCTGGCCTTGAACTCAGAAATTTGTCTGC  450

seq1  CTCTGCCTCTCAAGTGCTGGAATTAAAGGCGTGTGCCACCATGCTTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCTCAAGTGCTGGAATTAAAGGCGTGTGCCACCATGCTTGGTT  500

seq1  AGGTGTCTTGAATTC  515
      |||||||||||||||
seq2  AGGTGTCTTGAATTC  515

seq1: chr3_65372576_65373641
seq2: B6Ng01-336G02.g_65_1143

seq1  GAATTCCAGAAAAACCATGAAGTTCCAGAGCTCTTTGGAGACACTGACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAAACCATGAAGTTCCAGAGCTCTTTGGAGACACTGACAT  50

seq1  TCGGAAGGGGTATACATTATCTCAGCATCATTTCAGGCATTGAGGAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAGGGGTATACATTATCTCAGCATCATTTCAGGCATTGAGGAACAT  100

seq1  GTGTTGGGTTGTAAAAATTTATACATGATGAGACTACGCCCCATCATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGGTTGTAAAAATTTATACATGATGAGACTACGCCCCATCATATT  150

seq1  CCCTACCACATATATATATATATATATATATATATACACATATATATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACCACATATATATATATATATATATATATATACACATATATATGTA  200

seq1  TATATATCACATACACCCTTTCTATGTATGAAAACTACATCATCTCAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATCACATACACCCTTTCTATGTATGAAAACTACATCATCTCAGCG  250

seq1  ATTCTCGACAGTCTCGAGAGACATTTGTCTTTCACAGTGTCATATCTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCGACAGTCTCGAGAGACATTTGTCTTTCACAGTGTCATATCTACC  300

seq1  CCCCACTGAGAGGGATTGGGATCCAGAAAGATCTCTTGAAACATTATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTGAGAGGGATTGGGATCCAGAAAGATCTCTTGAAACATTATTGT  350

seq1  GAGGGAAAGCATGCCAAAGTTTCCCCATTTGTTTGCTTGTCAAGGCTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAAGCATGCCAAAGTTTCCCCATTTGTTTGCTTGTCAAGGCTAAG  400

seq1  AAAACATTGAAACCGGGACAGAGGGGGAGCAAACGATGTCTGTACTGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTGAAACCGGGACAGAGGGGGAGCAAACGATGTCTGTACTGACC  450

seq1  TCAAACCCAAAGATGATGATGCCTTTTTTTTTTCTTCAAAGAAAGACTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCCAAAGATGATGATGCCTTTTTTTTTTCTTCAAAGAAAGACTCC  500

seq1  TTTGAATGTGTCTCTATGGTCTGGAGTCAGAGATGACGGCAGTGGCGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATGTGTCTCTATGGTCTGGAGTCAGAGATGACGGCAGTGGCGGCA  550

seq1  TGTGGTACCCCAAAGTACTCATAGGCCCGCATCTCTCCGTCTAGACTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTACCCCAAAGTACTCATAGGCCCGCATCTCTCCGTCTAGACTGTC  600

seq1  TAGTTGACTAGAGAAAAATGCACTGTGGGAATCAGGCACACACCATGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGACTAGAGAAAAATGCACTGTGGGAATCAGGCACACACCATGGAG  650

seq1  ATGCCCAGGTTTCATTATGAACAATTAGCCAGCACCCTCTGTCACAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCAGGTTTCATTATGAACAATTAGCCAGCACCCTCTGTCACAGCAC  700

seq1  CTTCTGTCACAGACCACCCCTCCTAGGTCCCACAGGACTTTGACAACATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCACAGACCACCCCTCCTAGGTCCCACAGGACTTTGACAACATC  750

seq1  TAATAGAGACAGCTGTTCCAATAGACAACCTCGTCTGAACTAC-TCAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAATAGAGACAGCTGTTCCAATAGACAACCTCGTCTGAACTACTTCAGAT  800

seq1  GACCTTCGAGGCCTAGAACACAGAATCTTGCAAGATGGTACATCAAAGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCGAGGCCTAGAACACAGAATCTTGCAAGATGGTACATCAAAGCC  850

seq1  ACCGGACTATTGTGCCTGCTCATACAACAAGGTAGAC-TTTTGTTTGGGG  898
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACCGGACTATTGTGCCTGCTCATACAACAAGGTAGACTTTTTGTTTGGGG  900

seq1  GTT--GTTTGTTTGCCTGTTTGAAACAGGGTCTCTATCTAGCCCT-GGCT  945
      |||   ||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTTGTTTTGTTTGCCTGTTTGAAACAGGGTCTCTATCTAGCCCTGGGCT  950

seq1  ACCCTGGAAC-TCGCTATGTAGTCCAAGATGAC-TTTAAACCTACAGAGA  993
      | |||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  AACCTGGAACTTCGCTATGTAGTCCAAGATGACTTTTAAACCTACAGAGA  1000

seq1  T-CTCCCTGCCTCTGCCTCCCGAGT-TCTAAGATCAGCACTACCATGC-A  1040
      | |||||||||||||||| |||||| | ||||||||||| |||||||| |
seq2  TCCTCCCTGCCTCTGCCTTCCGAGTCTATAAGATCAGCATTACCATGCAA  1050

seq1  CCACCAT-GCCCAGCTC--TTTCTTTAAA  1066
      ||||||| |||||||||  ||||||||||
seq2  CCACCATGGCCCAGCTCCTTTTCTTTAAA  1079