BAC Information

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BAC

Clone NameB6Ng01-336G04
Chromosome3 (Build37)
Map Location 6,254,679 - 6,330,120
singlet/doubletdoublet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570
Downstream geneLOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336G04.bB6Ng01-336G04.g
ACCGA121323GA121324
length1,1731,111
definitionB6Ng01-336G04.b B6Ng01-336G04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,254,679 - 6,255,879)(6,328,996 - 6,330,120)
sequence
gaattcagtctattagctaacagacaacacctaaaatttacatatccagg
ttgatttatttcagttactttatttggattcactggaaaaaatgatttga
atgaggcaggtcaacacatatttaatgacactttctataatgtgagaata
ggattttctaatgcctagtcagggataaagctaatttctttaacatatag
ttttgttggaatgattcctattatagaaaggaaaatcccaaataaaatag
ttatcctcatatatgtgtgtttgttttcttttaattttgaatggtgactg
tatgaatcacagatactttcagcactaaatgtttagaaatgtgaagtaac
atggggcaatagtggagaaggaaacttggtacattgacaacagagaaata
taaccagagaacatgtgtttgagaaaaatccgtagggttcggggtttctc
atttccttcaattccattatatttagttcagaaaatctttctgtaatatt
ataccgggaggaacacagaggtggctgtctccatcaacatatttgaaatt
taccatttgagggtgatgtgaaaaggggagacactgggaagtaacagctc
atcactctattccttgtgattaatggtgtacagggacatttgttgtatct
tctggagtattaaaatgttaaggaattgatgttatatctttagatcctga
agcagaataaggactttgagtggaagaggtgcatcctggatgtcccattg
caaccttttttagagtaaagagagaaaagttagcttacaaatgagccaga
ttcagtatacaaggctcataattctacacaaaatggtcatgtattttata
aatagttcaagctaaaagaaatataattaaagacatatatttaatttaat
gttgtatacttataattaaaagaatattattttttgcctcactgaaggat
atgcataaaattcagctgtgatgaggaccacaattatgtttccttgcaca
tagcttaaacatgagaacattgctcacggataagaacaagtatgtgtttc
tatattctgttgtattcatccatgcatgcatttgtgaaaagcagagctgc
taaaatgacagtcaaaggtaactaagggatactagttgtgatctggctac
aggtagcatacacatctgacttg

gaattcaattaaataaggtctaggtctacattgtgatcccagggtataca
ggtatatgtagcaagaccttgtctcagtaaccttttgcatacagtacaaa
gattttaaaaaatcaaaaaagcaagttttaaaattatttaaaatataaaa
gaatttaggaggtaaagaaatgtgcatcaatttcatttccttggctgaca
gtgcttatagtagcatacatttgacacataatttagaaattcacatattg
ttaaaatccaaaatattttaaaacagaatattttccagatacactgactg
ttaatccaagattaatgtaaaaagtaatatgcctaaaacattcttaactg
aaaattaaacataattttcaaagtattacatttgtattatttgaaagcaa
tatgacaaaaaatattttattttatatgtaaaggtgtaccttcataaatg
tgggacaaagggtgaaagaaaatattgttgaaatagcttatgtaaagacc
attcaaagcccaataaattaatatcaaaataacaatgaataataatacag
aattatgatctctatgtaaatgaacaaatgattatgtgcaatttcagtat
tcaattatgttttaataaatatttgtattacacacacacacacacacaca
cacacacatatatatatatacacacatacatatcacattttataataaga
attgaatattgggaatatttaatcctttcccatttagcagtttgaaatac
agctgttagctctataccatgctgtgcaataaattatgaagttattcttg
tctaagtgcaactttctgtactttggtcagcacttcctcctttgccttga
ctcctgttgtggattgacccagagaatgtcactattaggaggtgtggctt
tgttggagcagatgtgggcttgttggaggaagcctgtcactctgggagtg
gctctgaagtaacctcctcctaactgcccttgagacagtctttctggttc
ttttcaagcagatgtagagtctcagctctctcagtgccatgctggacact
gcatgcttcctgcgtgatgataatattactattctctgatctgtaatgtg
ccttagaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6254679_6255879
seq2: B6Ng01-336G04.b_43_1215

seq1  GAATTCAGTCTATTAGCTAACAGACAACACCTAAAATTTACATATCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTATTAGCTAACAGACAACACCTAAAATTTACATATCCAGG  50

seq1  TTGATTTATTTCAGTTACTTTATTTGGATTCACTGGAAAAAATGATTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTATTTCAGTTACTTTATTTGGATTCACTGGAAAAAATGATTTGA  100

seq1  ATGAGGCAGGTCAACACATATTTAATGACACTTTCTATAATGTGAGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCAGGTCAACACATATTTAATGACACTTTCTATAATGTGAGAATA  150

seq1  GGATTTTCTAATGCCTAGTCAGGGATAAAGCTAATTTCTTTAACATATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTCTAATGCCTAGTCAGGGATAAAGCTAATTTCTTTAACATATAG  200

seq1  TTTTGTTGGAATGATTCCTATTATAGAAAGGAAAATCCCAAATAAAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGGAATGATTCCTATTATAGAAAGGAAAATCCCAAATAAAATAG  250

seq1  TTATCCTCATATATGTGTGTTTGTTTTCTTTTAATTTTGAATGGTGACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTCATATATGTGTGTTTGTTTTCTTTTAATTTTGAATGGTGACTG  300

seq1  TATGAATCACAGATACTTTCAGCACTAAATGTTTAGAAATGTGAAGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATCACAGATACTTTCAGCACTAAATGTTTAGAAATGTGAAGTAAC  350

seq1  ATGGGGCAATAGTGGAGAAGGAAACTTGGTACATTGACAACAGAGAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCAATAGTGGAGAAGGAAACTTGGTACATTGACAACAGAGAAATA  400

seq1  TAACCAGAGAACATGTGTTTGAGAAAAATCCGTAGGGTTCGGGGTTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGAGAACATGTGTTTGAGAAAAATCCGTAGGGTTCGGGGTTTCTC  450

seq1  ATTTCCTTCAATTCCATTATATTTAGTTCAGAAAATCTTTCTGTAATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTCAATTCCATTATATTTAGTTCAGAAAATCTTTCTGTAATATT  500

seq1  ATACCGGGAGGAACACAGAGGTGGCTGTCTCCATCAACATATTTGAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCGGGAGGAACACAGAGGTGGCTGTCTCCATCAACATATTTGAAATT  550

seq1  TACCATTTGAGGGTGATGTGAAAAGGGGAGACACTGGGAAGTAACAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTTGAGGGTGATGTGAAAAGGGGAGACACTGGGAAGTAACAGCTC  600

seq1  ATCACTCTATTCCTTGTGATTAATGGTGTACAGGGACATTTGTTGTATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCTATTCCTTGTGATTAATGGTGTACAGGGACATTTGTTGTATCT  650

seq1  TCTGGAGTATTAAAATGTTAAGGAATTGATGTTATATCTTTAGATCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTATTAAAATGTTAAGGAATTGATGTTATATCTTTAGATCCTGA  700

seq1  AGCAGAATAAGGACTTTGAGTGGAAGAGGTGCATCCTGGATGTCCCATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAATAAGGACTTTGAGTGGAAGAGGTGCATCCTGGATGTCCCATTG  750

seq1  CAACCTTTTTTAGAGTAAAGAGAGAAAAGTTAGCTTACAAATGAGCCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTTTTTAGAGTAAAGAGAGAAAAGTTAGCTTACAAATGAGCCAGA  800

seq1  TTCAGGTATACAAGGCTCATAATTCTACACAAAATGGTCATGTATTTTAT  850
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCA-GTATACAAGGCTCATAATTCTACACAAAATGGTCATGTATTTTAT  849

seq1  AAATAGTTCAAGCTAAAAGAAATATAATTAAAGACATATATTTAATTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTCAAGCTAAAAGAAATATAATTAAAGACATATATTTAATTTAA  899

seq1  TGTTGTATACTTATAATTAAAAGAATATTTATTTTTTGCCTCACTGAAGG  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGTTGTATACTTATAATTAAAAGAATA-TTATTTTTTGCCTCACTGAAGG  948

seq1  ATATGCATAAAATTCAGCTGTGATGAGGAACCACAATTATGTTTCCTTTG  1000
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  ATATGCATAAAATTCAGCTGTGATGAGG-ACCACAATTATGTTTCC-TTG  996

seq1  CACATAGCTTAAACAATGAGAACATTTGCTTCACGGATAAAGAACAGTTA  1050
      |||||||||||||| ||||||||| |||| |||||||| |||||||  ||
seq2  CACATAGCTTAAAC-ATGAGAACA-TTGC-TCACGGAT-AAGAACAAGTA  1042

seq1  TGTTGTTTCTATATTTCTTGTTTGTAATTTCATCCATGCATGCCATTTGT  1100
      || |||||||||| ||||   |||||  |||||||||||||| |||||||
seq2  TG-TGTTTCTATA-TTCT--GTTGTA--TTCATCCATGCATG-CATTTGT  1085

seq1  TGGAAAAAGCAAGAAGCCTGCTAAAAATGACAGTCAAAAGTAACTAAGGG  1150
          |||||| |||   ||||| ||||||||||||||| |||||||||||
seq2  ---GAAAAGC-AGA--GCTGCT-AAAATGACAGTCAAAGGTAACTAAGGG  1128

seq1  ATAACTTAGTTTGTGAAATTCTTGCTACA-GTAGCATACACATCTGAACT  1199
      |||   ||| ||||||   ||| |||||| |||||||||||||||| |||
seq2  ATA--CTAG-TTGTGA---TCTGGCTACAGGTAGCATACACATCTG-ACT  1171

seq1  TG  1201
      ||
seq2  TG  1173


seq1: chr3_6328996_6330120
seq2: B6Ng01-336G04.g_64_1174 (reverse)

seq1  CTCTTCTAAAGGGCAACATTACAGATTCAGAGGATTAGTTATTATTATCA  50
      |||||||||  ||| |||||||||| ||||| || ||| || ||||||||
seq2  CTCTTCTAA--GGC-ACATTACAGA-TCAGA-GAATAG-TAATATTATCA  44

seq1  TCACGGCAGGAAGCATGGCAGTGTCCAAGCATGGCACTGGAGAGGAGCTG  100
      |||| ||||||||||| ||||||||| ||||||||||| |||| ||||||
seq2  TCAC-GCAGGAAGCAT-GCAGTGTCC-AGCATGGCACT-GAGA-GAGCTG  89

seq1  AGACTTCTACATCTTGCTTTGAAAAGAACCAG-AAGACTGTCTCAAGGGC  149
      |||| |||||||| ||| |||||||||||||| |||||||||||||||||
seq2  AGAC-TCTACATC-TGC-TTGAAAAGAACCAGAAAGACTGTCTCAAGGGC  136

seq1  AGTTAGGAGGAGGTTACTTTCAGAGCCACTCCCAGAGTGACAGGCTTCCT  199
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGTTAGGAGGAGGTTAC-TTCAGAGCCACTCCCAGAGTGACAGGCTTCCT  185

seq1  CCAACAAGCCCACATCTGCTCCAACAAAGCCACACCTCCTAATAGTGACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAGCCCACATCTGCTCCAACAAAGCCACACCTCCTAATAGTGACA  235

seq1  TTCTCTGGGTCAATCCACAACAGGAGTCAAGGCAAAGGAGGAAGTGCTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGGTCAATCCACAACAGGAGTCAAGGCAAAGGAGGAAGTGCTGA  285

seq1  CCAAAGTACAGAAAGTTGCACTTAGACAAGAATAACTTCATAATTTATTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTACAGAAAGTTGCACTTAGACAAGAATAACTTCATAATTTATTG  335

seq1  CACAGCATGGTATAGAGCTAACAGCTGTATTTCAAACTGCTAAATGGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATGGTATAGAGCTAACAGCTGTATTTCAAACTGCTAAATGGGAA  385

seq1  AGGATTAAATATTCCCAATATTCAATTCTTATTATAAAATGTGATATGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAAATATTCCCAATATTCAATTCTTATTATAAAATGTGATATGTA  435

seq1  TGTGTGTATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAT  485

seq1  ACAAATATTTATTAAAACATAATTGAATACTGAAATTGCACATAATCATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATTTATTAAAACATAATTGAATACTGAAATTGCACATAATCATT  535

seq1  TGTTCATTTACATAGAGATCATAATTCTGTATTATTATTCATTGTTATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTTACATAGAGATCATAATTCTGTATTATTATTCATTGTTATTT  585

seq1  TGATATTAATTTATTGGGCTTTGAATGGTCTTTACATAAGCTATTTCAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTAATTTATTGGGCTTTGAATGGTCTTTACATAAGCTATTTCAAC  635

seq1  AATATTTTCTTTCACCCTTTGTCCCACATTTATGAAGGTACACCTTTACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTCTTTCACCCTTTGTCCCACATTTATGAAGGTACACCTTTACA  685

seq1  TATAAAATAAAATATTTTTTGTCATATTGCTTTCAAATAATACAAATGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATAAAATATTTTTTGTCATATTGCTTTCAAATAATACAAATGTA  735

seq1  ATACTTTGAAAATTATGTTTAATTTTCAGTTAAGAATGTTTTAGGCATAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTGAAAATTATGTTTAATTTTCAGTTAAGAATGTTTTAGGCATAT  785

seq1  TACTTTTTACATTAATCTTGGATTAACAGTCAGTGTATCTGGAAAATATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTACATTAATCTTGGATTAACAGTCAGTGTATCTGGAAAATATT  835

seq1  CTGTTTTAAAATATTTTGGATTTTAACAATATGTGAATTTCTAAATTATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTAAAATATTTTGGATTTTAACAATATGTGAATTTCTAAATTATG  885

seq1  TGTCAAATGTATGCTACTATAAGCACTGTCAGCCAAGGAAATGAAATTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAATGTATGCTACTATAAGCACTGTCAGCCAAGGAAATGAAATTGA  935

seq1  TGCACATTTCTTTACCTCCTAAATTCTTTTATATTTTAAATAATTTTAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATTTCTTTACCTCCTAAATTCTTTTATATTTTAAATAATTTTAAA  985

seq1  ACTTGCTTTTTTGATTTTTTAAAATCTTTGTACTGTATGCAAAAGGTTAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTTTTTTGATTTTTTAAAATCTTTGTACTGTATGCAAAAGGTTAC  1035

seq1  TGAGACAAGGTCTTGCTACATATACCTGTATACCCTGGGATCACAATGTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAAGGTCTTGCTACATATACCTGTATACCCTGGGATCACAATGTA  1085

seq1  GACCTAGACCTTATTTAATTGAATTC  1125
      ||||||||||||||||||||||||||
seq2  GACCTAGACCTTATTTAATTGAATTC  1111


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