BAC Information

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BAC

Clone NameB6Ng01-336H11
Chromosome3 (Build37)
Map Location 82,848,431 - 82,980,459
singlet/doubletdoublet
Overlap geneFgb, Plrg1, EG627094
Upstream geneGucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga
Downstream geneDchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336H11.bB6Ng01-336H11.g
ACCGA121379GA121380
length1,2331,177
definitionB6Ng01-336H11.b B6Ng01-336H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,848,431 - 82,849,650)(82,979,268 - 82,980,459)
sequence
gaattctatcacgtgaactacagagctccttttatctcctgttcctacaa
atagagcacacaggatgaagaaacttctccatctttcctttccatggcct
tgccatctgttcacacaagcacacgcatacacacattagagacccctgaa
atgcccaccctcattatattataatcggctcagcagaacggggtggagtt
gttagtcaaggcagaatatgacatgcccaggatataaccatgatatacta
gaatattattacattctgctggggaaaagctactctgctcactttttagt
ccctatgtttaaaggaggttagatcttcaggaagtctatggaaatgtatt
cactaactagttacctttcccagacaccactggaatgttgcagctgacag
tgcatggagtgcggcagtattccatttgagctgagatgtcagactctaat
ttttgtattttgcttctcaggtcctccaggattgagcggagcacacgaag
attaagggggatattatcattcacagtctcatcaatatataatctctgat
cttccaggatggaggagtactcatttatgacattttcattctctggaaag
ccaaaatgatacaggagtggtcagcatatttgcctataaaaggatatcta
actacatcaatatgattttgattctctgagaataaacttaaatactttgg
ggtgccactaagcaatcgtgactgctgaactttagaggcatatttttgtt
tgtttgtttgtttcttcctttcatggcatgtataaattggcatgcagttc
acctacttactactccagtgatttgtcctaggtgcacacaagtcatgtct
tactttgggagcagtactgaaggctccatctcatagcattgcagagaaga
ggcagttggcactcgcacaccccatgggtactgcaaagccttaggattta
caagaacacttctgaattcatttgatgcctaactgtgtgtctaccctttg
gtgtgctgctctctgaaagcctgtgccatgtgacaccccaactgatccca
ccccaccaaggcccgtagcctcaagatttgtatgcagatgtcacttgcta
cagataatatcacaacctgatgggttctctattccagtacctcttcagta
ttgagtaccgttacaaatacctaagcttttaatccatgcatatattatat
ttctgagactcacaaaagtgtttatatatagac
gaattccacacccatgaaatctcatctcagtcaatatggctacctaggga
cctgcacaatgacaataccatttgatatgctaatgtggatgagagaaatc
tcacaaggtccctcctcaaaatgaagagctacaggcaactgatgggtgct
gggagaggaaggatcaggcctcgccggggacaagccctctgattggttat
ccaaccacaaggcgtcagccctaagtacatccgtgtacaagcaactcaaa
aggactgcaggatgtatttatatatgcatagatgtaacaataataataca
agaagaaggggtcatgaattgaaaaagaggtggggggctcaggaggaact
tgaaggaaaagagtaagggtgaaaatgatgtaaatagtgttcgtgtataa
aattcttaattaaaaaaaaaaatgttaagaagtgtcatgagctcgtgaca
caattgcttttccagtcagcattggtctgcccagctaaccccatggtctg
acctaatctgtagggattacaaccctcattgattccataagagaaatata
gctgactcggtgtttatgctaagctgcagctttttagctattccccatca
gagtgtgtgacactgtgggccttgtttccaagatgtaaatgtgacacagc
tgtgagagaatctgatgacaaaaattctaaataacagcaatgtgtaaaca
ctcaatttgtctggaaacatgttagaagcccaggctaataaactctctcg
gaacacagtcgcaaacctcagccacccatcgggttcaccaggtccaggcc
tgtcatgggcgctccttccttggcatctggtttctggctcagaatttata
attaatttaccaaacctttaagctctgttacaactacttgaaaaagatcc
aatgcagctcacgagaacaactggatctgggccattttatataaacgaag
aatcctctggtctccacctatgtcaggggaactgcagtaggaaggaagag
aaggggatgggagagtagagacctttcagcgactgctgctctgtctgaca
gaaatttttcaactgaagtccactctgctgaagtcagcttcattccacag
ttctttctcacactatttcattcatatccagtcatctgtgatgagaattt
gcttaaccttccaattttggcagagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82848431_82849650
seq2: B6Ng01-336H11.b_49_1281

seq1  GAATTCTATCACGTGAACTACAGAGCTCCTTTTATCTCCTGTTCCTACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCACGTGAACTACAGAGCTCCTTTTATCTCCTGTTCCTACAA  50

seq1  ATAGAGCACACAGGATGAAGAAACTTCTCCATCTTTCCTTTCCATGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCACACAGGATGAAGAAACTTCTCCATCTTTCCTTTCCATGGCCT  100

seq1  TGCCATCTGTTCACACAAGCACACGCATACACACATTAGAGACCCCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCTGTTCACACAAGCACACGCATACACACATTAGAGACCCCTGAA  150

seq1  ATGCCCACCCTCATTATATTATAATCGGCTCAGCAGAACGGGGTGGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCACCCTCATTATATTATAATCGGCTCAGCAGAACGGGGTGGAGTT  200

seq1  GTTAGTCAAGGCAGAATATGACATGCCCAGGATATAACCATGATATACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTCAAGGCAGAATATGACATGCCCAGGATATAACCATGATATACTA  250

seq1  GAATATTATTACATTCTGCTGGGGAAAAGCTACTCTGCTCACTTTTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTATTACATTCTGCTGGGGAAAAGCTACTCTGCTCACTTTTTAGT  300

seq1  CCCTATGTTTAAAGGAGGTTAGATCTTCAGGAAGTCTATGGAAATGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGTTTAAAGGAGGTTAGATCTTCAGGAAGTCTATGGAAATGTATT  350

seq1  CACTAACTAGTTACCTTTCCCAGACACCACTGGAATGTTGCAGCTGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACTAGTTACCTTTCCCAGACACCACTGGAATGTTGCAGCTGACAG  400

seq1  TGCATGGAGTGCGGCAGTATTCCATTTGAGCTGAGATGTCAGACTCTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGAGTGCGGCAGTATTCCATTTGAGCTGAGATGTCAGACTCTAAT  450

seq1  TTTTGTATTTTGCTTCTCAGGTCCTCCAGGATTGAGCGGAGCACACGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATTTTGCTTCTCAGGTCCTCCAGGATTGAGCGGAGCACACGAAG  500

seq1  ATTAAGGGGGATATTATCATTCACAGTCTCATCAATATATAATCTCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGGGGATATTATCATTCACAGTCTCATCAATATATAATCTCTGAT  550

seq1  CTTCCAGGATGGAGGAGTACTCATTTATGACATTTTCATTCTCTGGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGATGGAGGAGTACTCATTTATGACATTTTCATTCTCTGGAAAG  600

seq1  CCAAAATGATACAGGAGTGGTCAGCATATTTGCCTATAAAAGGATATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGATACAGGAGTGGTCAGCATATTTGCCTATAAAAGGATATCTA  650

seq1  ACTACATCAATATGATTTTGATTCTCTGAGAATAAACTTAAATACTTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATCAATATGATTTTGATTCTCTGAGAATAAACTTAAATACTTTGG  700

seq1  GGTGCCACTAAGCAATCGTGACTGCTGAACTTTAGAGGCATATTTTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCACTAAGCAATCGTGACTGCTGAACTTTAGAGGCATATTTTTGTT  750

seq1  TGTTTGTTTGTTTCTTCCTTTCATGGCATGTATAAATTGGCATGCAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTCTTCCTTTCATGGCATGTATAAATTGGCATGCAGTTC  800

seq1  ACCTACTTACTACTCCAGTGATTTGTCCTAGGTGCACACAAGTCATGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTTACTACTCCAGTGATTTGTCCTAGGTGCACACAAGTCATGTCT  850

seq1  TACTTTGGGAGCAGTACTGAAGGCTCCATCTCATAGCATTGCAGAGAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGGGAGCAGTACTGAAGGCTCCATCTCATAGCATTGCAGAGAAGA  900

seq1  GGCAGTTGGCACTCGCACACCCCATGGGTACTGCAAAGCCTTAGGATTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTGGCACTCGCACACCCCATGGGTACTGCAAAGCCTTAGGATTTA  950

seq1  CAAGAACACTTCTGAATTCATTTGATGCCTAACTGTGTGTCTACCCTTGG  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAAGAACACTTCTGAATTCATTTGATGCCTAACTGTGTGTCTACCCTTTG  1000

seq1  GTGTGCTGCTCTCTGAAAAGCCTGTGCCATGTGACACCCCAACTGATTCC  1050
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  GTGTGCTGCTCTCTG-AAAGCCTGTGCCATGTGACACCCCAACTGATCCC  1049

seq1  CACCCACC-AGGCCCGTAGCCCTCAAGATTTGTATGCCAGATGTCACTGC  1099
        |||||| |||||||||| |||||||||||||||| |||||||||||  
seq2  ACCCCACCAAGGCCCGTAG-CCTCAAGATTTGTATG-CAGATGTCACTTG  1097

seq1  TTACAGATTAATATCACA--CTGAT-GGTTCTCATATT-CAGTA-CTCTC  1144
       |||||| ||||||||||  ||||| ||||||| |||| ||||| |||| 
seq2  CTACAGA-TAATATCACAACCTGATGGGTTCTC-TATTCCAGTACCTCTT  1145

seq1  AGGTATTGAGTACC-TTACAAATA-CTAAGTTTTTATCCTATGC--ATAT  1190
        |||||||||||| ||||||||| ||||| |||||  | ||||  ||||
seq2  CAGTATTGAGTACCGTTACAAATACCTAAGCTTTTAATCCATGCATATAT  1195

seq1  TATA-TTCTGAG--TCACAAA--TGTTTA---ATAGAC  1220
      |||| |||||||  |||||||  ||||||   ||||||
seq2  TATATTTCTGAGACTCACAAAAGTGTTTATATATAGAC  1233

seq1: chr3_82979268_82980459
seq2: B6Ng01-336H11.g_64_1240 (reverse)

seq1  TTCTCTGC--AAAATGGA--GTTAAGCAAA-TCTCATCACAGGATGACTT  45
      ||||||||  ||| ||||  |||||||||| |||||||||| |||||| |
seq2  TTCTCTGCCAAAATTGGAAGGTTAAGCAAATTCTCATCACA-GATGAC-T  48

seq1  TGATAATGAAATGAAATAGTGTGAAGGAAAAGAACTTGGTGAATGAAGCT  95
       ||| ||| |||||||||||||||    ||||||| ||  ||||||||||
seq2  GGAT-ATG-AATGAAATAGTGTGA---GAAAGAAC-TGTGGAATGAAGCT  92

seq1  GACTCTCAGCAGAAGTGGGAACTTCAGTTGAAAAATATCTGTTCAAGGAC  145
      |||| ||||||| |||||  |||||||||||||||| |||| |||  |||
seq2  GACT-TCAGCAG-AGTGG--ACTTCAGTTGAAAAATTTCTG-TCA--GAC  135

seq1  AGGAGCCAAGCAGTCGCTGAAAGGTCTCTACTTCTCCCATCCCCTTCTCT  195
      | ||||  ||||||||||||||||||||||| ||||||||||||||||||
seq2  A-GAGC--AGCAGTCGCTGAAAGGTCTCTAC-TCTCCCATCCCCTTCTCT  181

seq1  TCCTTCCTACTGCAGTTCCCCTGACAATAGGT-GAGACCAGAGGATTCTT  244
      ||||||||||||||||||||||||| |||||| |||||||||||||||||
seq2  TCCTTCCTACTGCAGTTCCCCTGAC-ATAGGTGGAGACCAGAGGATTCTT  230

seq1  CGTTTATATAAAATGGCCCAGATCCAGTTGTTCTCGTGAGCTGCATTGGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTATATAAAATGGCCCAGATCCAGTTGTTCTCGTGAGCTGCATTGGA  280

seq1  TCTTTTTCAAGTAGTTTGTAACAGAGCTTAAAGGTTTGGTAAATTAATTA  344
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCAAGTAG-TTGTAACAGAGCTTAAAGGTTTGGTAAATTAATTA  329

seq1  TAAATTCTGAGCCAGAAACCAGATGCCAAGGAAGGAGCGCCCATGACAGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTGAGCCAGAAACCAGATGCCAAGGAAGGAGCGCCCATGACAGG  379

seq1  CCTGGACCTGGTGAACCCGATGGGTGGCTGAGGTTTGCGACTGTGTTCCG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACCTGGTGAACCCGATGGGTGGCTGAGGTTTGCGACTGTGTTCCG  429

seq1  AGAGAGTTTATTAGCCTGGGCTTCTAACATGTTTCCAGACAAATTGAGTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTTTATTAGCCTGGGCTTCTAACATGTTTCCAGACAAATTGAGTG  479

seq1  TTTACACATTGCTGTTATTTAGAATTTTTGTCATCAGATTCTCTCACAGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACATTGCTGTTATTTAGAATTTTTGTCATCAGATTCTCTCACAGC  529

seq1  TGTGTCACATTTACATCTTGGAAACAAGGCCCACAGTGTCACACACTCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCACATTTACATCTTGGAAACAAGGCCCACAGTGTCACACACTCTG  579

seq1  ATGGGGAATAGCTAAAAAGCTGCAGCTTAGCATAAACACCGAGTCAGCTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAATAGCTAAAAAGCTGCAGCTTAGCATAAACACCGAGTCAGCTA  629

seq1  TATTTCTCTTATGGAATCAATGAGGGTTGTAATCCCTACAGATTAGGTCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCTTATGGAATCAATGAGGGTTGTAATCCCTACAGATTAGGTCA  679

seq1  GACCATGGGGTTAGCTGGGCAGACCAATGCTGACTGGAAAAGCAATTGTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGGGGTTAGCTGGGCAGACCAATGCTGACTGGAAAAGCAATTGTG  729

seq1  TCACGAGCTCATGACACTTCTTAACATTTTTTTTTTTAATTAAGAATTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGAGCTCATGACACTTCTTAACATTTTTTTTTTTAATTAAGAATTTT  779

seq1  ATACACGAACACTATTTACATCATTTTCACCCTTACTCTTTTCCTTCAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACGAACACTATTTACATCATTTTCACCCTTACTCTTTTCCTTCAAG  829

seq1  TTCCTCCTGAGCCCCCCACCTCTTTTTCAATTCATGACCCCTTCTTCTTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTGAGCCCCCCACCTCTTTTTCAATTCATGACCCCTTCTTCTTG  879

seq1  TATTATTATTGTTACATCTATGCATATATAAATACATCCTGCAGTCCTTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTGTTACATCTATGCATATATAAATACATCCTGCAGTCCTTT  929

seq1  TGAGTTGCTTGTACACGGATGTACTTAGGGCTGACGCCTTGTGGTTGGAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGCTTGTACACGGATGTACTTAGGGCTGACGCCTTGTGGTTGGAT  979

seq1  AACCAATCAGAGGGCTTGTCCCCGGCGAGGCCTGATCCTTCCTCTCCCAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATCAGAGGGCTTGTCCCCGGCGAGGCCTGATCCTTCCTCTCCCAG  1029

seq1  CACCCATCAGTTGCCTGTAGCTCTTCATTTTGAGGAGGGACCTTGTGAGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATCAGTTGCCTGTAGCTCTTCATTTTGAGGAGGGACCTTGTGAGA  1079

seq1  TTTCTCTCATCCACATTAGCATATCAAATGGTATTGTCATTGTGCAGGTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCATCCACATTAGCATATCAAATGGTATTGTCATTGTGCAGGTC  1129

seq1  CCTAGGTAGCCATATTGACTGAGATGAGATTTCATGGGTGTGGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTAGCCATATTGACTGAGATGAGATTTCATGGGTGTGGAATTC  1177