BAC Information

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BAC

Clone NameB6Ng01-336H23
Chromosome3 (Build37)
Map Location 45,323,616 - 45,324,823
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336H23.bB6Ng01-336H23.g
ACCGA121401GA121402
length1,201604
definitionB6Ng01-336H23.b B6Ng01-336H23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactaaactctcttccttctggaaaatttttagtcggtatgatca
acagaaatgctgaacatgaattttgtgtacagaagaaaaatcagtaatga
tacgggtaattgaaataaatttaatgttttacttgcatactgtgagggca
cttcctgcagggagaaagttgacttttttctatgtaccatcagaatgtag
aattgtaaaaaacaataagtaaaatgatggattttttgaacataaagata
tttataataactaaagctcttcaagaatagactgaatacctgtgaaagtg
aggaagctccctggaattcaacacaaaaacaaatttgggaatagaagtgt
ctctttcagacttgtaaacaaaattttaagacagtctaaaaataggtaaa
tttataacccagggtctaaattcatgagatgtgataaattgcaatacaat
ccattttgcatcaaaactcagcttgtggctttaaaagatacctatgtgct
ctgctatgaatgtgtctaaacaactaaatttttgccatgagatcaattgt
attctcactagaaatgctggaaagctctttctggttcacccctcatgcag
ggttttgctgtgttgtatttgttttgaatgtgctgcacatatgtatatat
tttatatatgcttccaaagctataagaaatttgaggttttaattttagtg
cagatacatatcttttcaaatgtttttgactatgtttactgtgtttaaaa
atctatttaatatcttttacttatttattaatctgttatatcatctttat
tgatttataagtttttacatatatattgtgagtaaattattttgtttatt
ttgcaatttttttttggtttggtaacttattttataccaaaaacataata
gtttttgtggaaagtcttattatatttcaagtaaaaataatttatattta
atgtccaatgtatcacaattaggggatgttgttaaatccaggaaataaat
gtattcttccatatttctataaaaggtttatattttatcatactttataa
ctaaattttcactgttttagtctgtgatgtaatatgctgctgttcttatg
tccatcatatgtatgtattgtcatagatgcctagagggaaggcataatcc
ttggacgctcagctataatcacctttgaacctatctggatagtgggttct
g

gaattcagagtccacctcccatagagacctggcctcaggtggaaggaagg
gtttaccaatcctgtcataatttctggcccagattttttcctgtctataa
gaactgcaggaacaaatgttgagaagagactgaaggaaaggttgtctagt
gaatgaacctacttggaaaccatctcattggaggtgactccaaagtctga
tgctatggctgccttctgagagacccaacaagcagctgactgaggcagaa
acagatacttacactcaaacattggattgaagtcagggactcctattgtt
gaattaggtgaaggattcaaaaaaagctgaaatggagggtgaccccacaa
gaagaccaacagtcttacctaacctggacccctggagctcccaagaactg
agccaccaaccaggaagcatacaagggctggttggaggcccctggcaaaa
tacagtagaagactgtctggcctagtctgagtggaagaagatgcacctaa
tcctggagaatcttgatggcccagggaatggggaggccttctggaggagg
gggagagaatcctctagtagacagggggatggaggaatgggatgaggaaa
tgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45323616_45324823
seq2: B6Ng01-336H23.b_42_1241

seq1  GAATTCACTAAACTCTCTTCCTTCTGGAAAATTTTTAGTCGGTATGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAACTCTCTTCCTTCTGGAAAATTTTTAGTCGGTATGATCA  50

seq1  ACAGAAATGCTGAACATGAATTTTGTGTACAGAAGAAAAATCAGTAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATGCTGAACATGAATTTTGTGTACAGAAGAAAAATCAGTAATGA  100

seq1  TACGGGTAATTGAAATAAATTTAATGTTTTACTTGCATACTGTGAGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGGTAATTGAAATAAATTTAATGTTTTACTTGCATACTGTGAGGGCA  150

seq1  CTTCCTGCAGGGAGAAAGTTGACTTTTTTCTATGTACCATCAGAATGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGCAGGGAGAAAGTTGACTTTTTTCTATGTACCATCAGAATGTAG  200

seq1  AATTGTAAAAAACAATAAGTAAAATGATGGATTTTTTGAACATAAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAAAAAACAATAAGTAAAATGATGGATTTTTTGAACATAAAGATA  250

seq1  TTTATAATAACTAAAGCTCTTCAAGAATAGACTGAATACCTGTGAAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATAACTAAAGCTCTTCAAGAATAGACTGAATACCTGTGAAAGTG  300

seq1  AGGAAGCTCCCTGGAATTCAACACAAAAACAAATTTGGGAATAGAAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTCCCTGGAATTCAACACAAAAACAAATTTGGGAATAGAAGTGT  350

seq1  CTCTTTCAGACTTGTAAACAAAATTTTAAGACAGTCTAAAAATAGGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCAGACTTGTAAACAAAATTTTAAGACAGTCTAAAAATAGGTAAA  400

seq1  TTTATAACCCAGGGTCTAAATTCATGAGATGTGATAAATTGCAATACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACCCAGGGTCTAAATTCATGAGATGTGATAAATTGCAATACAAT  450

seq1  CCATTTTGCATCAAAACTCAGCTTGTGGCTTTAAAAGATACCTATGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGCATCAAAACTCAGCTTGTGGCTTTAAAAGATACCTATGTGCT  500

seq1  CTGCTATGAATGTGTCTAAACAACTAAATTTTTGCCATGAGATCAATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATGAATGTGTCTAAACAACTAAATTTTTGCCATGAGATCAATTGT  550

seq1  ATTCTCACTAGAAATGCTGGAAAGCTCTTTCTGGTTCACCCCTCATGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCACTAGAAATGCTGGAAAGCTCTTTCTGGTTCACCCCTCATGCAG  600

seq1  GGTTTTGCTGTGTTGTATTTGTTTTGAATGTGCTGCACATATGTATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGCTGTGTTGTATTTGTTTTGAATGTGCTGCACATATGTATATAT  650

seq1  TTTATATATGCTTCCAAAGCTATAAGAAATTTGAGGTTTTAATTTTAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATATGCTTCCAAAGCTATAAGAAATTTGAGGTTTTAATTTTAGTG  700

seq1  CAGATACATATCTTTTCAAATGTTTTTGACTATGTTTACTGTGTTTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACATATCTTTTCAAATGTTTTTGACTATGTTTACTGTGTTTAAAA  750

seq1  ATCTATTTAATATCTTTTACTTATTTATTAAATCTGTTATATCATCTTTA  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATCTATTTAATATCTTTTACTTATTTATT-AATCTGTTATATCATCTTTA  799

seq1  TTGATTTATAAGTTTTTACATATATATTGTGAGTAAATTATTTTGTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTATAAGTTTTTACATATATATTGTGAGTAAATTATTTTGTTTAT  849

seq1  TTTGCAA-TTTTTTTTGGTTTGGTAACTTATTTTATACCAAAAACATAAT  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAATTTTTTTTTGGTTTGGTAACTTATTTTATACCAAAAACATAAT  899

seq1  AGTTTTTGTGGAAAGTCTTATTATATTTCAAGTAAAAATAATTTATATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTGTGGAAAGTCTTATTATATTTCAAGTAAAAATAATTTATATTT  949

seq1  AATGTCCAATGTATCACAATTAGGGGATGTTGTTAAAATCCAGGAAATAA  999
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATGTCCAATGTATCACAATTAGGGGATGTTGTT-AAATCCAGGAAATAA  998

seq1  ATGTATTCTTCCATATTTCTAATAAAAGGTTTATTATTTTATCATACTTT  1049
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  ATGTATTCTTCCATATTTCT-ATAAAAGGTTTA-TATTTTATCATACTTT  1046

seq1  ATACTTAAATTTTCACTTGTTTTTAGTCTTGTGAATGTAATATGCCTGCC  1099
      |||  ||||||||||||   |||||||| |||| |||||||||| ||| |
seq2  ATAACTAAATTTTCACT--GTTTTAGTC-TGTG-ATGTAATATG-CTG-C  1090

seq1  TGTTCTTATGTCCATCATATGTATGTATTGTCCATAGATG-CTAGA-GGA  1147
      ||||||||||||||||||||||||||||||| |||||||| ||||| |||
seq2  TGTTCTTATGTCCATCATATGTATGTATTGT-CATAGATGCCTAGAGGGA  1139

seq1  AGGCAATATATCCCCTTGACCCTCAGCTATAATCACCTTTGAACCTA-CT  1196
      ||||   |||  || | ||| |||||||||||||||||||||||||| ||
seq2  AGGC---ATAATCCTTGGACGCTCAGCTATAATCACCTTTGAACCTATCT  1186

seq1  GG-TA-TGGGTTCT  1208
      || || ||||||||
seq2  GGATAGTGGGTTCT  1200


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