BAC Information

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BAC

Clone NameB6Ng01-337J03
Chromosome3 (Build37)
Map Location 26,516,639 - 26,615,155
singlet/doubletdoublet
Overlap geneSpata16
Upstream geneNlgn1, LOC621017, LOC229152
Downstream geneLOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337J03.bB6Ng01-337J03.g
ACCGA122154GA122155
length2041,100
definitionB6Ng01-337J03.b B6Ng01-337J03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,516,639 - 26,516,835)(26,614,053 - 26,615,155)
sequence
aacagctttcaaaatttaaccaagagaattaaacacatatttatcactag
atgaatacatatcagttacttattataatttctctgaagaaaagagaaag
aaagagagagagagagagagagagagagagagagaaggaaggaaggaagg
aaggaaggaaggaaggaaggaaggaaggaaggaagggagttcgcaaggaa
ggaa

gaattccaccctccaggacaccggcaaattgttttattggaaaactttcc
atgttcaaataatggtaagcgtccctgcagggctgcccaatgtgcagagc
actcagacacatattgaaaatgtcagaagggatgagatgacatgcaatct
tctacaaactgactttgaacacagacatctactcacttcaactttttaaa
aagaatacaaaaagtttatataattcatcttaggaaatagtgtcctaaga
caacttctctgtttcgttttagttctaatagagctagcatctggtgaaca
gcccagtttggagagaaatgtttctggaaaggatttgaagagaggaccta
gggggttgaggacatcacaccacagacaggagccctgtgctactggcctg
agctagaacactcagctccaatttatatgtcacgttaccaagttacttcc
aagttattcaaatctggtagcatctcatcatcttctaaaatttctcctta
agcacgtcagagatgtatgtatgtatgtaaagggtactatatttgtgtat
atctagctttttctgtagccatgaaagaatgtaattctgaggtcatttaa
tccttactgttacatcaggcatgaatctagttggtataaaattaacaaca
tcaccaatggattatttgccttctgaggatgtatgtttaaattaacacct
tggttttatgctgtgctgaagaacaccttttgaaaaacatctatgagggc
taggagagttttggctcactgaaaaatatttttttacacctaaaattttt
tatgcaatgttgtaaatctgcaaaaaagtcattttaaacagctgagattt
ttatgggccactcagggataataaaaagtttgaagaatatattatattat
gtaaatgaggagaatattatttagtcaatattatgactttaaaaagggaa
cttcgctccttaaaacagaacaagggggaaattatccctgggtctttcag
gaaatgtcagcatgtttagccgataccatagcctcttttcactgtatcct
aaaacccaagcatgtgatctttccggctatagaacatgaatccccccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_26516639_26516835
seq2: B6Ng01-337J03.b_47_250

seq1  AACAGCTTTCAAAATTTAACCAAGAGAATTAAACACATATTTATCACTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTTTCAAAATTTAACCAAGAGAATTAAACACATATTTATCACTAG  50

seq1  ATGAATACATATCAGTTACTTATTATAATTTCTCTGAAGAAAAGAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATACATATCAGTTACTTATTATAATTTCTCTGAAGAAAAGAGAAAG  100

seq1  AAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAAGGAAGGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAAGGAAGGAAGG  150

seq1  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGG-------AAGGAA  193
      |||||||||||||||||||||||||||||||||||||       ||||||
seq2  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGAGTTCGCAAGGAA  200

seq1  GGAA  197
      ||||
seq2  GGAA  204


seq1: chr3_26614053_26615155
seq2: B6Ng01-337J03.g_61_1160 (reverse)

seq1  CATGGGGGGAATCACTGTTTCCTATAGCCGG-AAGATCACATGCCTTTGG  49
      |||||||||| ||| ||||  |||||||||| ||||||||||||  ||||
seq2  CATGGGGGGATTCA-TGTT--CTATAGCCGGAAAGATCACATGC--TTGG  45

seq1  GTTTTAGGATACAGTGAAAAGAGGCTTATGGTATCGGCTAAAACATGCTG  99
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  GTTTTAGGATACAGTGAAAAGAGGC-TATGGTATCGGCT-AAACATGCTG  93

seq1  ACATTTTCCCTGAAAGA-CCAGTGAATAATTCCCCCTTGTTCTGTTTTTA  148
      ||||||  ||||||||| |||| ||  | ||||||||||||||||||| |
seq2  ACATTT--CCTGAAAGACCCAGGGATAATTTCCCCCTTGTTCTGTTTTAA  141

seq1  AGAGCG-AGTTCCCTTTTTAAAGTCATAATATTGACTAA--TATATTCTC  195
       ||||| ||||||||||||||||||||||||||||||||   ||||||||
seq2  GGAGCGAAGTTCCCTTTTTAAAGTCATAATATTGACTAAATAATATTCTC  191

seq1  CTCATTTACATAATATAATATATTCTTCAAACTTTTTATTATCCCTGAGT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTACATAATATAATATATTCTTCAAACTTTTTATTATCCCTGAGT  241

seq1  GG-CCATAAAAATCTCAGCTGTTTAAAATGACTTTTTTGCAGATTTACAA  294
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATAAAAATCTCAGCTGTTTAAAATGACTTTTTTGCAGATTTACAA  291

seq1  CATTGCATAAAAAATTTTAGGTGTAAAAAAATATTTTTCAGTGAGCCAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCATAAAAAATTTTAGGTGTAAAAAAATATTTTTCAGTGAGCCAAA  341

seq1  ACTCTCCTAGCCCTCATAGATGTTTTTCAAAAGGTGTTCTTCAGCACAGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCTAGCCCTCATAGATGTTTTTCAAAAGGTGTTCTTCAGCACAGC  391

seq1  ATAAAACCAAGGTGTTAATTTAAACATACATCCTCAGAAGGCAAATAATC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCAAGGTGTTAATTTAAACATACATCCTCAGAAGGCAAATAATC  441

seq1  CATTGGTGATGTTGTTAATTTTATACCAACTAGATTCATGCCTGATGTAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTGATGTTGTTAATTTTATACCAACTAGATTCATGCCTGATGTAA  491

seq1  CAGTAAGGATTAAATGACCTCAGAATTACATTCTTTCATGGCTACAGAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGGATTAAATGACCTCAGAATTACATTCTTTCATGGCTACAGAAA  541

seq1  AAGCTAGATATACACAAATATAGTACCCTTTACATACATACATACATCTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGATATACACAAATATAGTACCCTTTACATACATACATACATCTC  591

seq1  TGACGTGCTTAAGGAGAAATTTTAGAAGATGATGAGATGCTACCAGATTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTGCTTAAGGAGAAATTTTAGAAGATGATGAGATGCTACCAGATTT  641

seq1  GAATAACTTGGAAGTAACTTGGTAACGTGACATATAAATTGGAGCTGAGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACTTGGAAGTAACTTGGTAACGTGACATATAAATTGGAGCTGAGT  691

seq1  GTTCTAGCTCAGGCCAGTAGCACAGGGCTCCTGTCTGTGGTGTGATGTCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGCTCAGGCCAGTAGCACAGGGCTCCTGTCTGTGGTGTGATGTCC  741

seq1  TCAACCCCCTAGGTCCTCTCTTCAAATCCTTTCCAGAAACATTTCTCTCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCCCTAGGTCCTCTCTTCAAATCCTTTCCAGAAACATTTCTCTCC  791

seq1  AAACTGGGCTGTTCACCAGATGCTAGCTCTATTAGAACTAAAACGAAACA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGGCTGTTCACCAGATGCTAGCTCTATTAGAACTAAAACGAAACA  841

seq1  GAGAAGTTGTCTTAGGACACTATTTCCTAAGATGAATTATATAAACTTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTTGTCTTAGGACACTATTTCCTAAGATGAATTATATAAACTTTT  891

seq1  TGTATTCTTTTTAAAAAGTTGAAGTGAGTAGATGTCTGTGTTCAAAGTCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTTTTTAAAAAGTTGAAGTGAGTAGATGTCTGTGTTCAAAGTCA  941

seq1  GTTTGTAGAAGATTGCATGTCATCTCATCCCTTCTGACATTTTCAATATG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAGAAGATTGCATGTCATCTCATCCCTTCTGACATTTTCAATATG  991

seq1  TGTCTGAGTGCTCTGCACATTGGGCAGCCCTGCAGGGACGCTTACCATTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGTGCTCTGCACATTGGGCAGCCCTGCAGGGACGCTTACCATTA  1041

seq1  TTTGAACATGGAAAGTTTTCCAATAAAACAATTTGCCGGTGTCCTGGAGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACATGGAAAGTTTTCCAATAAAACAATTTGCCGGTGTCCTGGAGG  1091

seq1  GTGGAATTC  1103
      |||||||||
seq2  GTGGAATTC  1100


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