BAC Information

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BAC

Clone NameB6Ng01-337K08
Chromosome3 (Build37)
Map Location 98,518,349 - 98,519,464
singlet/doubletsinglet
Overlap geneHsd3b2
Upstream genePde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543
Downstream geneHsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15, M6pr-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337K08.bB6Ng01-337K08.g
ACCGA122204GA122205
length1,1661,110
definitionB6Ng01-337K08.b B6Ng01-337K08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacttaaagaaatacaggagaacacaagtaaagtagtagaagccc
ttaaaaaggaaacacataaatcccttaaagaaatacaggagaacacaatc
aaacaggtgaagggattgaaaagaaagaaactgtccgggatttaaaaatg
gaaatagaatcactaaagaaaacacaaagggagacagccctggagatgga
atacctaggaaagagaacaggagtcacagatgtaagaatcaccaacagag
tacaagagacagaagagagaatcacaacagcagaagatgcagtagaagac
atccacataacaataaaggaaaatacaaaaaacaaaaaactcctatctca
aagtattcaaggaatccaggacacacgaaaagaccaaacctgagaataat
atgtatagaagagactgaagattcccaactcaaagggccagcaaacattt
tcaacaaaattatagaagaaaactttcctaacctaaagaaagaaatgccc
ataaactttaaaaaggcctacagaacaccaaacagatggggccagaaatg
agattcctttcgttgtataataattaaaataccaaatgcacagaacaatg
aaagaatattgaaagcagtaagagaaaaaaggtaaagaaacatataatgg
cagaccaatcaggattacactagacttctgaacagaaactacaaaagcaa
gaacatcttgggcagatatcaaacagaccttaagagaaaaaaatgccagc
ccagactactatattcagcaaaattcttaattaccatagatggagaaacc
aaagtattccaagacaaaaccaaattaaataatattgtttcactaatcca
gccctacatatggtaatagaagtaaaggtccaacacaaggagggaaacta
tacccaagaaaaagcaagaaattaaaccttttcacactaaagccaaagaa
gagaaacacacaaacataatttccactttctaacaacaaaaataataaga
agctatgataatttgtcccttaatatctctcatatgaatggactcagttc
cccaataaaaaataacatagctaaacagaacttgcatatgtaaccagatc
aatgcacctctgctgcatacagaaacacacttagagtcaaagaacggaac
attttcccctccttca
gaattctctaatcatgatcctatctactcaccccctccttctccctttct
gttgatgttgaaaaccagtggttctcacacttcctaatgctgtaaccctt
taatactgttccttatgttatggtgatcaccaaccagaaaattacttgta
ttgctaactcataactataattttgctgctgttacaaattataatgtaaa
tatctgacatgctgtccctgtgaaaaggtcattttactcccaaggaatta
cttggctgactcacaattttagatctactgctttagatagacttgttcag
gagtattgctgtgacaagagagtaagaatccagacctgcagtgaaataaa
atctcatccatgagctttattgaggactctgagatccaaggagagagcct
gtagagtgtttcctggtagagccatagcaacaccctcatttaagacatct
ggatgtgacagatatttgcaaaaacaacatcatggtatggtgctgtaata
tgagctatttcagaaagagacagagagaacctctgctacactctgggtgt
gaagaatacagaggctgcagctggacttcctgggttcccatttagttggt
ttatgtatctgtgacaattggggaagccacttaactcctgcacttgttta
tctccatctgcagaaatagaggatagaaacattaactacattccagacag
gttacccacaacaatggtgtgcccccacggagcctggcagggaaaggaca
ctttcatgaatctccactcttatgtttaggcatggccttctctatgcata
cccactgtggagatattcctccaaactgagccttgactctttgcaaatat
tgctgagacatcagattctaattaattgaattgcctgtgtgttaatattg
ctttctggaagcaacactgaagatgatagaggagagactgatcctggtag
agtcagagacagatgcagaggttgggtgtggtccagagactatggaggct
ctgtgtgcagagcatatccttattgtatgtgcaattaaccctgcagcttg
gggagagggcaagttactagcttgtgcccacaatacagaccatgggatga
gactcctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_98518349_98519464
seq2: B6Ng01-337K08.g_65_1174

seq1  GAATTCTCTAATCATGATCCTATCTACTCACCCCCTCCTTCTCCCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAATCATGATCCTATCTACTCACCCCCTCCTTCTCCCTTTCT  50

seq1  GTTGATGTTGAAAACCAGTGGTTCTCACACTTCCTAATGCTGTAACCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTTGAAAACCAGTGGTTCTCACACTTCCTAATGCTGTAACCCTT  100

seq1  TAATACTGTTCCTTATGTTATGGTGATCACCAACCAGAAAATTACTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTGTTCCTTATGTTATGGTGATCACCAACCAGAAAATTACTTGTA  150

seq1  TTGCTAACTCATAACTATAATTTTGCTGCTGTTACAAATTATAATGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAACTCATAACTATAATTTTGCTGCTGTTACAAATTATAATGTAAA  200

seq1  TATCTGACATGCTGTCCCTGTGAAAAGGTCATTTTACTCCCAAGGAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGACATGCTGTCCCTGTGAAAAGGTCATTTTACTCCCAAGGAATTA  250

seq1  CTTGGCTGACTCACAATTTTAGATCTACTGCTTTAGATAGACTTGTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTGACTCACAATTTTAGATCTACTGCTTTAGATAGACTTGTTCAG  300

seq1  GAGTATTGCTGTGACAAGAGAGTAAGAATCCAGACCTGCAGTGAAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTGCTGTGACAAGAGAGTAAGAATCCAGACCTGCAGTGAAATAAA  350

seq1  ATCTCATCCATGAGCTTTATTGAGGACTCTGAGATCCAAGGAGAGAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATCCATGAGCTTTATTGAGGACTCTGAGATCCAAGGAGAGAGCCT  400

seq1  GTAGAGTGTTTCCTGGTAGAGCCATAGCAACACCCTCATTTAAGACATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGTGTTTCCTGGTAGAGCCATAGCAACACCCTCATTTAAGACATCT  450

seq1  GGATGTGACAGATATTTGCAAAAACAACATCATGGTATGGTGCTGTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGACAGATATTTGCAAAAACAACATCATGGTATGGTGCTGTAATA  500

seq1  TGAGCTATTTCAGAAAGAGACAGAGAGAACCTCTGCTACACTCTGGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTATTTCAGAAAGAGACAGAGAGAACCTCTGCTACACTCTGGGTGT  550

seq1  GAAGAATACAGAGGCTGCAGCTGGACTTCCTGGGTTCCCATTTAGTTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATACAGAGGCTGCAGCTGGACTTCCTGGGTTCCCATTTAGTTGGT  600

seq1  TTATGTATCTGTGACAATTGGGGAAGCCACTTAACTCCTGCACTTGTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTATCTGTGACAATTGGGGAAGCCACTTAACTCCTGCACTTGTTTA  650

seq1  TCTCCATCTGCAGAAATAGAGGATAGAAACATTAACTACATTCCAGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCTGCAGAAATAGAGGATAGAAACATTAACTACATTCCAGACAG  700

seq1  GTTACCCACAACAAATGGTGTGCCCCCACGGAGCCTGGCAGGGAAAGGAC  750
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTACCCACAAC-AATGGTGTGCCCCCACGGAGCCTGGCAGGGAAAGGAC  749

seq1  ACTTTCATGAATCTCCACTCTTATGTTTAGGCATGGCCTTCTCTATGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCATGAATCTCCACTCTTATGTTTAGGCATGGCCTTCTCTATGCAT  799

seq1  ACCCACTGTGGAGATATTCCTCCAAACTGAGCCTTGACTCTTTGCAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTGTGGAGATATTCCTCCAAACTGAGCCTTGACTCTTTGCAAATA  849

seq1  TTGCTGAGACATCAGGATTCTAATTAATTGAATTGCCTGTGTGTTAATAT  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGCTGAGACATCA-GATTCTAATTAATTGAATTGCCTGTGTGTTAATAT  898

seq1  TGCTTTCTGGAAGCAACACTGAAGATGATAGAGGAGAGAACTGATCCTGG  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGCTTTCTGGAAGCAACACTGAAGATGATAGAGGAGAG-ACTGATCCTGG  947

seq1  AAGAGGTCAGAGACAAGATGCAGAGGTTGGGTGTTGTCCCAGAGGACTAT  1000
       ||| ||||||||| ||||||||||||||||||| || ||||| ||||||
seq2  TAGA-GTCAGAGAC-AGATGCAGAGGTTGGGTGTGGT-CCAGA-GACTAT  993

seq1  GGAGGGCTCTGTGTGCAGAGCATATCCCTATGTAATGTGCATTTACCCTT  1050
      ||| ||||||||||||||||||||||| |||   ||||||| ||| || |
seq2  GGA-GGCTCTGTGTGCAGAGCATATCCTTATTGTATGTGCAATTAACCCT  1042

seq1  GGAGC-TGGGGAGAGGGCAAAGTACTAGCTTGTG-CCAC-ATACAGACAA  1097
      | ||| ||||||||||||||  |||||||||||| |||| |||||||| |
seq2  GCAGCTTGGGGAGAGGGCAAGTTACTAGCTTGTGCCCACAATACAGACCA  1092

seq1  TGGGAATGAAGACT-CTGTA  1116
      |||| ||| ||||| |||||
seq2  TGGG-ATG-AGACTCCTGTA  1110