BAC Information

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BAC

Clone NameB6Ng01-337N07
Chromosome3 (Build37)
Map Location 105,500,129 - 105,628,424
singlet/doubletdoublet
Overlap gene6530418L21Rik, Rap1a, EG433637
Upstream geneEG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik, 1700095B22Rik, Kcnd3, Ddx20
Downstream geneAdora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337N07.bB6Ng01-337N07.g
ACCGA122329GA122330
length6741,085
definitionB6Ng01-337N07.b B6Ng01-337N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,627,752 - 105,628,424)(105,500,129 - 105,501,222)
sequence
gaattctctaagttgctacaaggctgctaagccaaaatggtatttctcca
ggccagcccatttttagatttatgatatctcagtatcaagatttaggacc
aaatttaatttaattttcttttgtattgttttgtttgctgcgctttaaaa
aatgataatctcctctctccttctctctttctctttctcactccccctct
ccctcttcctcactttcctcttcctttctctcccctcctgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtacctgttactgcatgtatgtgaagg
tcagaggaaaacttctgtaaggtgggcctctccttctcccatgtgagttc
tggggattgaagtcaggtggacaaggtaagcagaaaacgccttttttcgc
tgagccatctcaggagccctcactgagctttctagaatgtatcttttgcc
taaaactttaacttgaagtataatagtgcagctgagatgcccagtccagc
attgtgatgaactaagaagctgctgagacatttctggttgctgcctcatc
aggacaggaccagcttttgcctctgagaacctactcggtgtctgtcctgg
tgagaacctactgggtgtctgcctgtcctggtgagaccctactgggtgtc
tgtcctggtgacttaagagatgat
gaattctggtcaaggtggtgaacaccaatcagtgagcacagctgggacct
tgtcacaccttgctactctggcacgctcattacctaccccaggctgcaca
ctagttaatgagcagcctctagacacagtggaggtggcagatgtgcttag
acaagatgtcctagttttctttctgttgctgtggtagaaattacgaccaa
agcaacctcgggaggaaagaatttatttggctttcagttttcattctgtc
ttagaagagagtcagtgcaggaacttcagggagaaccctggaggcaggaa
tggaaacaggttacaggctggctcttcatggctcgcttgaacttcttgct
catacaacccaggaccacctgcccaaaggtggcatggcccacaattgcct
gtcccccctgaaaatcaaccattaatcgtttgaaggcctcacagatctgc
atacaggctaatctgatgaaggcattttctcaattgaaagtttcttcctc
ccagataacctaagcttatgtcaaactgacaccaagtagccatcatagaa
gacaaacaacaagaaacaccgtcaaggggagtgtatgaatgccacagcag
gcctacattgagctcatttcatgtcactgttcacaacgtggaaaagccta
acagtatccagacaggttgtggatactaagacaaataccactggccaatt
aaactcatcctttgggttacgattgaccactctcaaccccaacagcacca
acctatctaaaaacattgaacaggactcttccaagggaaggaattagagt
cctctaagacagtgattcacagccttcctaacgctgcaacctgttaatac
agttgctcatgctgtggtgacccccaaccttaagattattttgttgctac
ttcataactgcaattttgcttctgttacaaatcatactgtaaatatctga
taggcatgatatctgatatgtgactttccaaagagtcatgacccacagta
gaagccttgctctagaaacaccggcagggagatagtaggtagaagtcttt
tgggacatggtcacagatcatgacttatcctggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_105627752_105628424
seq2: B6Ng01-337N07.b_48_721 (reverse)

seq1  ATCATCTCCTAAGTCACCAGGACAGACACCCAGTAGGGTCTCACCAGGAC  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTCTTAAGTCACCAGGACAGACACCCAGTAGGGTCTCACCAGGAC  50

seq1  AGGCAGACACCCAGTAGGTTCTCACCAGGACAGACACCGAGTAGGTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGACACCCAGTAGGTTCTCACCAGGACAGACACCGAGTAGGTTCTC  100

seq1  AGAGGC-AAAGCTGGTCCTGTCCTGATGAGGCAGCAACCAGAAATGTCTC  149
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAAAAGCTGGTCCTGTCCTGATGAGGCAGCAACCAGAAATGTCTC  150

seq1  AGCAGCTTCTTAGTTCATCACAATGCTGGACTGGGCATCTCAGCTGCACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTTCTTAGTTCATCACAATGCTGGACTGGGCATCTCAGCTGCACT  200

seq1  ATTATACTTCAAGTTAAAGTTTTAGGCAAAAGATACATTCTAGAAAGCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACTTCAAGTTAAAGTTTTAGGCAAAAGATACATTCTAGAAAGCTC  250

seq1  AGTGAGGGCTCCTGAGATGGCTCAGCGAAAAAAGGCGTTTTCTGCTTACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGGCTCCTGAGATGGCTCAGCGAAAAAAGGCGTTTTCTGCTTACC  300

seq1  TTGTCCACCTGACTTCAATCCCCAGAACTCACATGGGAGAAGGAGAGGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCACCTGACTTCAATCCCCAGAACTCACATGGGAGAAGGAGAGGCC  350

seq1  CACCTTACAGAAGTTTTCCTCTGACCTTCACATACATGCAGTAACAGGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTACAGAAGTTTTCCTCTGACCTTCACATACATGCAGTAACAGGTA  400

seq1  CACACACACACACACACACACACACACACACACACAGGAGGGGAGAGAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACAGGAGGGGAGAGAAA  450

seq1  GGAAGAGGAAAGTGAGGAAGAGGGAGAGGGGGAGTGAGAAAGAGAAAGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGAAAGTGAGGAAGAGGGAGAGGGGGAGTGAGAAAGAGAAAGAG  500

seq1  AGAAGGAGAGAGGAGATTATCATTTTTTAAAGCGCAGCAAACAAAACAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGAGAGGAGATTATCATTTTTTAAAGCGCAGCAAACAAAACAAT  550

seq1  ACAAAAGAAAATTAAATTAAATTTGGTCCTAAATCTTGATACTGAGATAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAAAATTAAATTAAATTTGGTCCTAAATCTTGATACTGAGATAT  600

seq1  CATAAATCTAAAAATGGGCTGGCCTGGAGAAATACCATTTTGGCTTAGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATCTAAAAATGGGCTGGCCTGGAGAAATACCATTTTGGCTTAGCA  650

seq1  GCCTTGTAGCAACTTAGAGAATTC  673
      ||||||||||||||||||||||||
seq2  GCCTTGTAGCAACTTAGAGAATTC  674

seq1: chr3_105500129_105501222
seq2: B6Ng01-337N07.g_67_1151

seq1  GAATTCTGGTCAAGGTGGTGAACACCAATCAGTGAGCACAGCTGGGACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTCAAGGTGGTGAACACCAATCAGTGAGCACAGCTGGGACCT  50

seq1  TGTCACACCTTGCTACTCTGGCACGCTCATTACCTACCCCAGGCTGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACACCTTGCTACTCTGGCACGCTCATTACCTACCCCAGGCTGCACA  100

seq1  CTAGTTAATGAGCAGCCTCTAGACACAGTGGAGGTGGCAGATGTGCTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTAATGAGCAGCCTCTAGACACAGTGGAGGTGGCAGATGTGCTTAG  150

seq1  ACAAGATGTCCTAGTTTTCTTTCTGTTGCTGTGGTAGAAATTACGACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATGTCCTAGTTTTCTTTCTGTTGCTGTGGTAGAAATTACGACCAA  200

seq1  AGCAACCTCGGGAGGAAAGAATTTATTTGGCTTTCAGTTTTCATTCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCTCGGGAGGAAAGAATTTATTTGGCTTTCAGTTTTCATTCTGTC  250

seq1  TTAGAAGAGAGTCAGTGCAGGAACTTCAGGGAGAACCCTGGAGGCAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGAGAGTCAGTGCAGGAACTTCAGGGAGAACCCTGGAGGCAGGAA  300

seq1  TGGAAACAGGTTACAGGCTGGCTCTTCATGGCTCGCTTGAACTTCTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACAGGTTACAGGCTGGCTCTTCATGGCTCGCTTGAACTTCTTGCT  350

seq1  CATACAACCCAGGACCACCTGCCCAAAGGTGGCATGGCCCACAATTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAACCCAGGACCACCTGCCCAAAGGTGGCATGGCCCACAATTGCCT  400

seq1  GTCCCCCCTGAAAATCAACCATTAATCGTTTGAAGGCCTCACAGATCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCCTGAAAATCAACCATTAATCGTTTGAAGGCCTCACAGATCTGC  450

seq1  ATACAGGCTAATCTGATGAAGGCATTTTCTCAATTGAAAGTTTCTTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGCTAATCTGATGAAGGCATTTTCTCAATTGAAAGTTTCTTCCTC  500

seq1  CCAGATAACCTAAGCTTATGTCAAACTGACACCAAGTAGCCATCATAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAACCTAAGCTTATGTCAAACTGACACCAAGTAGCCATCATAGAA  550

seq1  GACAAACAACAAGAAACACCGTCAAGGGGAGTGTATGAATGCCACAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACAACAAGAAACACCGTCAAGGGGAGTGTATGAATGCCACAGCAG  600

seq1  GCCTACATTGAGCTCATTTCATGTCACTGTTCACAACGTGGAAAAGCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACATTGAGCTCATTTCATGTCACTGTTCACAACGTGGAAAAGCCTA  650

seq1  ACAGTATCCAGACAGGTTGTGGATACTAAGACAAATACCACTGGCCAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATCCAGACAGGTTGTGGATACTAAGACAAATACCACTGGCCAATT  700

seq1  AAACTCATCCTTTGGGTTACGATTGACCACTCTCAACCCCAACAGCACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATCCTTTGGGTTACGATTGACCACTCTCAACCCCAACAGCACCA  750

seq1  ACCTATCTAAAAACATTGAACAGGACTCTTCCAAGGGAAGGAATTAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATCTAAAAACATTGAACAGGACTCTTCCAAGGGAAGGAATTAGAGT  800

seq1  CCTCTAAGACAGTGATTCACAGCCTTCCTAACGCTGCAACCTGTTAATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAGACAGTGATTCACAGCCTTCCTAACGCTGCAACCTGTTAATAC  850

seq1  AGTTGCTCATGCTGTGGTGACCCCCAACCTTAAGATTATTTTGTTGCTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTCATGCTGTGGTGACCCCCAACCTTAAGATTATTTTGTTGCTAC  900

seq1  TTCATAACTGCAATTTTGCTTCTGTTACAAATCATACTGTAAATATCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAACTGCAATTTTGCTTCTGTTACAAATCATACTGTAAATATCTGA  950

seq1  TAGGCATGATATCTGATATGTGAC-TTCCAAAGAGGTCATGACCCACAGG  999
      |||||||||||||||||||||||| ||||||||| |||||||||||||| 
seq2  TAGGCATGATATCTGATATGTGACTTTCCAAAGA-GTCATGACCCACAG-  998

seq1  TTAAGAAGCCCTGCTCTAGAAACACCCGGCAGGGGAGGATAGAAGGGAAG  1049
         ||||||| ||||||||||||| |||||||||   ||||| ||| |  
seq2  --TAGAAGCCTTGCTCTAGAAACA-CCGGCAGGG--AGATAGTAGGTA--  1041

seq1  GAGGTCCTTTTTGGGGACAGGGGTCACAGATCAT---TGGCCCTGGCT  1094
      || |||   ||| ||||||  |||||||||||||   |   |||||||
seq2  GAAGTC---TTTTGGGACA-TGGTCACAGATCATGACTTATCCTGGCT  1085