MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-337P09
Chromosome	3 (Build37)
Map Location	116,739,482 - 116,847,553
singlet/doublet	doublet
Overlap gene	1700061I17Rik
Upstream gene	Vcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749
Downstream gene	LOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
Link	Open Mouse BAC browser

Click to get alignment info.

name	Vcam1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22329 MGI:98926
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gpr88 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64378 MGI:1927653
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cdc14a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229776 MGI:2442676
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rtcd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66368 MGI:1913618
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dbt (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13171 MGI:105386
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043702 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043702
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 68 ESTs, 10 Proteins

name	LOC100043705 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043705
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 598 ESTs, 2 Proteins

name	Lrrc39 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109245 MGI:1924557
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	A930028L21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229780 MGI:1925219
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sass6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72776 MGI:1920026
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hiat1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15247 MGI:1201609
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc35a3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229782 MGI:1917648
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Agl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77559 MGI:1924809
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043710 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043710
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	LOC100043250 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043250
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Frrs1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20321 MGI:108076
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Palmd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:114301 MGI:2148896
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG668749 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668749 MGI:3643926
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	1700061I17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433646 MGI:1920612
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC674908 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:674908
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	D3Bwg0562e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229791 MGI:106530
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4833424O15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75769 MGI:1923019
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG668759 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668759 MGI:3643222
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Snx7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76561 MGI:1923811
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043260 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043260
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Vcam1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981429 GeneID:22329 MGI:98926
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vascular cell adhesion molecule 1 transcript_id : NM_011693.2

name	Gpr88 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:11967952 GeneID:64378 MGI:1927653
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G-protein coupled receptor 88 transcript_id : NM_022427.1

name	Cdc14a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124249116 GeneID:229776 MGI:2442676
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CDC14 cell division cycle 14 homolog A (S. cerevisiae) transcript_id : NM_001080818.1

name	Rtcd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802647 GeneID:66368 MGI:1913618
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA terminal phosphate cyclase domain 1 transcript_id : NM_025517.2

name	Dbt (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803124 GeneID:13171 MGI:105386
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dihydrolipoamide branched chain transacylase E2 transcript_id : NM_010022.2

name	LOC100043702 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251456 GeneID:100043702
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 68 ESTs, 10 Proteins product : similar to UBE2D3 transcript_id : XM_001480977.1

name	LOC100043705 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251458 GeneID:100043705
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 598 ESTs, 2 Proteins product : similar to MGC89287 protein transcript_id : XM_001480979.1

name	Lrrc39 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803027 GeneID:109245 MGI:1924557
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat containing 39 transcript_id : NM_175413.2

name	Lrrc39 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371234 GeneID:109245 MGI:1924557
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat containing 39 transcript_id : NM_027321.2

name	A930028L21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802054 GeneID:229780 MGI:1925219
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A930028L21 gene transcript_id : NM_030016.2

name	Sass6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037300 GeneID:72776 MGI:1920026
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : spindle assembly 6 homolog (C. elegans) transcript_id : NM_028349.1

name	Hiat1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680220 GeneID:15247 MGI:1201609
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hippocampus abundant gene transcript 1 transcript_id : NM_008246.1

name	Slc35a3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130067 GeneID:229782 MGI:1917648
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 transcript_id : NM_144902.3

name	Agl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486746 GeneID:77559 MGI:1924809
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amylo-1,6-glucosidase, 4-alpha-glucanotransferase transcript_id : NM_001081326.1

name	Frrs1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802713 GeneID:20321 MGI:108076
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ferric-chelate reductase 1 transcript_id : NM_009146.2

name	Palmd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89363041 GeneID:114301 MGI:2148896
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : palmdelphin transcript_id : NM_023245.3

name	1700061I17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369870 GeneID:433646 MGI:1920612
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : RIKEN cDNA 1700061I17 gene transcript_id : XM_485306.3

name	D3Bwg0562e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369078 GeneID:229791 MGI:106530
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed transcript_id : NM_177664.4

name	4833424O15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037432 GeneID:75769 MGI:1923019
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4833424O15 gene transcript_id : NM_029425.1

name	EG668759 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369871 GeneID:668759 MGI:3643222
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG668759 transcript_id : XM_001003479.1

name	Snx7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142359889 GeneID:76561 MGI:1923811
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sorting nexin 7 transcript_id : NM_029655.2

name	Vcam1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981430 CCDS:CCDS17785.1 GeneID:22329 MGI:98926
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA] GO_function : GO:0048503 - GPI anchor binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IDA]; GO:0016337 - cell-cell adhesion [Evidence IEA] codon_start : 1 exception : mismatches in translation product : vascular cell adhesion molecule 1 protein_id : NP_035823.2

name	Gpr88 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11967953 GeneID:64378 MGI:1927653
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence ISS] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : G-protein coupled receptor 88 protein_id : NP_071872.1

name	Cdc14a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249117 GeneID:229776 MGI:2442676
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA] codon_start : 1 product : CDC14 cell division cycle 14 homolog A protein_id : NP_001074287.1

name	Rtcd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313510 CCDS:CCDS17786.1 GeneID:66368 MGI:1913618
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0003963 - RNA-3'-phosphate cyclase activity [Evidence IEA] GO_process : GO:0006396 - RNA processing [Evidence IEA] codon_start : 1 exception : mismatches in translation product : RNA terminal phosphate cyclase domain 1 protein_id : NP_079793.1

name	Dbt (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753610 CCDS:CCDS17787.1 GeneID:13171 MGI:105386
definition	EC_number : 1.2.4.4 GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0031405 - lipoic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation note : BCKAD E2; part of the BCKAD complex; dihydrolipoyl transacylase; branched-chain alpha-ketoacid dehydrogenase, E2 subunit; dihydrolipoyllysine-residue (2-methylpropanoyl)transferase product : dihydrolipoamide branched chain transacylase E2 protein_id : NP_034152.1

name	LOC100043702 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251457 GeneID:100043702
definition	codon_start : 1 product : similar to UBE2D3 protein_id : XP_001481027.1

name	LOC100043705 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251459 GeneID:100043705
definition	codon_start : 1 product : similar to MGC89287 protein protein_id : XP_001481029.1

name	Lrrc39 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33636746 CCDS:CCDS17788.1 GeneID:109245 MGI:1924557
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : leucine rich repeat containing 39 isoform 2 protein_id : NP_780622.1

name	Lrrc39 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33636683 GeneID:109245 MGI:1924557
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : leucine rich repeat containing 39 isoform 1 protein_id : NP_081597.1

name	A930028L21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124430711 GeneID:229780 MGI:1925219
definition	GO_function : GO:0003676 - nucleic acid binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC229780 protein_id : NP_084292.1

name	Sass6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037301 CCDS:CCDS17789.1 GeneID:72776 MGI:1920026
definition	GO_process : GO:0007049 - cell cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation product : spindle assembly 6 protein_id : NP_082625.1

name	Hiat1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680221 CCDS:CCDS17790.1 GeneID:15247 MGI:1201609
definition	GO_function : GO:0015520 - tetracycline:hydrogen antiporter activity [Evidence IEA] GO_process : GO:0015904 - tetracycline transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : tetracycline transporter-like protein product : hippocampus abundant gene transcript 1 protein_id : NP_032272.1

name	Slc35a3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450281 CCDS:CCDS17791.1 GeneID:229782 MGI:1917648
definition	GO_component : GO:0000139 - Golgi membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005338 - nucleotide-sugar transporter activity [Evidence IEA]; GO:0005351 - sugar porter activity [Evidence IEA] GO_process : GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0015780 - nucleotide-sugar transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 protein_id : NP_659151.1

name	Agl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486747 GeneID:77559 MGI:1924809
definition	EC_number : 3.2.1.33 GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0004134 - 4-alpha-glucanotransferase activity [Evidence IEA]; GO:0004135 - amylo-alpha-1,6-glucosidase activity [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0004133 - glycogen debranching enzyme activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0005978 - glycogen biosynthesis [Evidence IEA]; GO:0005977 - glycogen metabolism [Evidence IDA] codon_start : 1 product : amylo-1,6-glucosidase, 4-alpha-glucanotransferase protein_id : NP_001074795.1

name	Frrs1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677899 CCDS:CCDS17792.1 GeneID:20321 MGI:108076
definition	GO_function : GO:0004500 - dopamine beta-monooxygenase activity [Evidence IEA]; GO:0000293 - ferric-chelate reductase activity [Evidence IDA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006584 - catecholamine metabolism [Evidence IEA]; GO:0006548 - histidine catabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : stromal cell derived factor receptor 2 protein_id : NP_033172.1

name	Palmd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89363042 CCDS:CCDS17793.1 GeneID:114301 MGI:2148896
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_process : GO:0008360 - regulation of cell shape [Evidence IEA] codon_start : 1 note : paralemmin-related product : palmdelphin protein_id : NP_075734.3

name	1700061I17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51708391 GeneID:433646 MGI:1920612
definition	codon_start : 1 product : RIKEN cDNA 1700061I17 protein_id : XP_485306.1

name	D3Bwg0562e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33186921 CCDS:CCDS17795.1 GeneID:229791 MGI:106530
definition	GO_function : GO:0004601 - peroxidase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : plasticity related gene 1 protein_id : NP_808332.2

name	4833424O15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037433 CCDS:CCDS17796.1 GeneID:75769 MGI:1923019
definition	codon_start : 1 exception : mismatches in translation note : plasticity related gene 5 product : phosphatidic acid phosphatase type 2d protein_id : NP_083701.1

name	EG668759 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94369872 GeneID:668759 MGI:3643222
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001003479.1

name	Snx7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249214 GeneID:76561 MGI:1923811
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0035091 - phosphoinositide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : sorting nexin 7 protein_id : NP_083931.1

name	LOC100043710 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043710
definition	number : 1 pseudo : _no_value

name	LOC100043250 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043250
definition	number : 1 pseudo : _no_value

name	LOC100043250 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043250
definition	number : 2 pseudo : _no_value

name	EG668749 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668749
definition	number : 2 pseudo : _no_value

name	EG668749 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668749
definition	number : 1 pseudo : _no_value

name	LOC674908 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:674908
definition	number : 1 pseudo : _no_value

name	LOC674908 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:674908
definition	number : 2 pseudo : _no_value

name	LOC100043260 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043260
definition	number : 1 pseudo : _no_value

clone name	MSMg01-365D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478E18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-374O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-326O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-173H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193G05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309G15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193F02
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-337P09.b	B6Ng01-337P09.g
ACC	GA122413	GA122414
length	944	955
definition	B6Ng01-337P09.b	B6Ng01-337P09.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(116,846,603 - 116,847,553)	(116,739,482 - 116,740,435)
sequence	gaattcatgtcacgtgatctcacaagctgtgagcatcatggaagactctt ctaaactaaaccctcccaagcctgggagcattgcctgccacgcagttttc ctgtatatgtgagttgttatttaagcataaagtttcaaatcatttttact ttaatgtcagtctccttcagaggctatttgcagaatccagcgtaaagtac aaaaaaagttgttagaatcccttatccccagcactgggggaaaagtcaga acaacaaatgacatcataaatagtgtagccttagaatctgcggctggaag agcagtaaattcctctttccagtctgccatttgagctttacaggagttct ttcttgtattgtttaatttctagcattctcagaaggtggtttatgcctgt ttgtccagcaggaggttgacttgacctactgtgaagaacaattgccatct cacggttgccaccttctacctgtctcaattcacagaccttcttctatctt ggcacctctgaaagaaaaacaaagcaatacatccatcccacttgtatcat tttattttaatttttttgttttgttttattttcctgatttttgatttttt aattggttgttttatttgtttacattgaccagtttcccctctgagtactc cctatcccatccccatgcccctgtttctattagggtgctcccccacctac ctactcccacctccccgccctagcattcccctacactggggcatggagcc ttctcaagaccaaagggtctctccttccttgatgtatgacaggccatcct ctgctacatatgcagctgggagccttgggtggctccgtgtgtactctttg gttgatggtttcgtccctggcagctctggaggttctggtggttgaatatt gtcttctatagttgcaaccccttcagctctcagtccttccccta	gaattctatctctgtggatttttagacatttcagtttgtatgtgtttcat ctaaagcagaatttctcaacatgaagctctattgactttggggccagatt ttcctttgctttgtgaggttgtctgttgttgtaaactgctcagaaagatg tcatggctaaataaaccaatatctctacctctgttagtcaacaaaactat ccacacacattacaattccctggttggtaaactcttccccacttaagaac cattgatctaggattggagagatggctcagccattaaaggctaggctcac aaccaaaaataagaaccactgatctaaagtgaatttatggtgtgtagatt tctacaaagcaacttcctcctttccattcttacactaccctctctctttc tcttgtttttctttctttgttttttctttcttcttttctcccccctgccc catttttctgtgctaagacttagcctagggccccgtgcttgctagacaaa tacttactactgagcaatataccctgtccaagtgtaagttttctttatgc aaagggatctatcatgattactctatgaaagacccaacaagcagctgaaa aaagtcagatgcagatatttgcacccaaccagtggacagaagcagctgac ctctgttgttgaattagggaaggctgaaagaagctgaggagaagggtgat actgtaggaggaccagcagtctcaattaatttggactcctgagatctctc aaacactggaccaccaaacagacagcatacaccagctgatatgaggccct caagatacatactgtagaggacttccgggtctgtgttcattcagagatga tgcacctaaccctcaagagactggaggccccagggaatttagatgtcggg tgtggtggggggggtcagggcatccacatggagatgggggtgcgggtgag gggag
quality values	Open. Hide. 58 31 24 35 58 35 26 47 62 62 41 42 47 62 62 49 41 38 62 62 47 51 56 51 62 62 62 62 62 62 62 44 59 59 59 62 59 59 59 62 62 59 62 62 59 39 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 59 62 62 59 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 62 62 62 62 62 49 47 62 62 62 62 54 46 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 43 62 62 62 62 62 62 58 58 58 40 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 58 58 58 58 54 58 54 54 58 58 58 58 54 54 58 52 58 44 58 58 58 58 58 58 58 54 58 58 58 58 58 58 39 49 54 45 58 58 58 58 58 51 58 58 47 58 58 58 58 58 50 54 58 58 51 54 58 49 54 58 58 51 58 58 46 41 58 58 58 51 53 58 58 58 58 51 52 54 53 53 51 58 58 50 54 48 58 58 50 58 58 50 58 58 58 58 58 58 54 28 58 58 51 49 21 58 58 18 39 37 58 58 43 35 44 32 49 49 18 58 58 58 51 39 39 12 54 54 54 54 52 52 53 41 46 54 49 26 38 51 32 54 54 47 53 39 49 34 51 45 36 39 40 45 31 42 49 52 37 45 40 36 33 54 54 37 40 54 49 46 38 46 41 42 53 21 40 37 37 53 52 49 36 33 47 37 25 51 29 31 34 32 52 52 47 32 31 52 32 40 40 40 29 51 25 49 32 52 32 35 32 32 32 32 53 51 32 53 31 47 45 46 46 46 45 45 29 46 31 42 30 51 32 31 30 42 32 51 33 43 30 31 42 33 51 51 31 31 34 51 33 30 39 23 31 32 31 46 34 46 46 31 32 38 31 28 31 28 30 48 46 41 31 29 31 26 24 9 11 32 25 22 43 31 30 28 21 26 25 41 25 19 6 46 10 27 46 19 26 26 37 29 32 24 31 31 41 19 15 19 27 31 36 27 34 32 32 37 24 35 11 32 6 24 21 14 24 36 21 34 31 33 21 32 35 33 25 28 24 34 25 26 38 34 32 32 31 27 10 47 8 37 20 32 26 13 24 32 48 48 22 21 30 21 30 20 33 9 17 22 19 31 19 14 20 27 30 18 47 20 17 20 14 25 28 37 22 21 26 7 31 18 26 19 27 32 43 30 21 21 4 4 9 8 13 32 25 21 18 12 31 7 18 10 15 26 28 13 22 4 3 20 15 28 19 24 6 6 18 29 20 8 14 8 7 13 23 5 10 10 9 3 3 12 27 11 27 24 10 34 34 17 15 15 24 20 10 20 21 17 14 7 28 11 27 11 8 26 10 15 38 38 13 18 24	Open. Hide. 46 35 62 47 62 62 54 62 62 62 56 22 22 21 21 23 22 20 27 28 49 49 33 46 59 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 59 62 62 62 62 62 54 59 59 62 62 59 62 62 62 62 62 62 56 42 49 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 59 62 62 62 62 59 59 62 62 62 59 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 59 62 62 62 54 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 52 62 62 62 62 43 62 62 62 62 62 62 62 54 62 62 62 62 58 58 58 58 54 58 54 49 58 58 58 58 58 58 58 58 58 58 54 58 58 58 54 47 58 58 58 54 58 58 58 58 58 58 58 58 54 58 48 49 58 54 58 58 58 54 58 54 58 58 58 58 54 58 41 43 54 58 58 54 42 58 54 54 58 58 42 41 58 58 51 58 54 49 58 58 49 53 54 47 58 58 58 54 58 58 58 49 49 58 50 49 23 47 43 34 51 51 50 58 54 50 53 50 48 54 51 58 58 49 58 58 58 48 46 50 43 43 44 32 58 51 52 50 58 50 40 38 58 58 51 51 50 49 58 49 32 58 50 53 49 53 52 58 58 51 32 53 49 58 58 31 58 52 39 53 53 53 31 22 49 53 49 53 58 40 50 49 39 49 49 53 52 50 53 39 40 58 50 46 47 32 54 37 53 52 54 54 54 35 51 38 35 49 51 52 46 11 42 54 23 54 49 21 54 52 42 53 52 43 42 53 53 54 34 37 25 47 51 26 54 23 14 39 35 37 53 52 31 33 53 42 32 32 40 52 52 34 30 31 54 51 54 32 32 24 41 26 53 40 41 28 24 39 37 31 41 42 45 40 40 53 46 36 31 33 31 31 40 27 17 31 34 29 21 20 51 40 32 27 31 38 34 34 30 30 31 35 29 31 29 34 30 31 30 42 32 31 37 28 28 31 30 33 15 29 9 36 41 31 35 36 42 30 37 28 26 36 32 31 28 31 31 38 29 43 24 42 25 31 29 11 20 24 21 28 20 46 33 31 36 31 42 31 36 30 31 32 25 12 25 33 31 19 39 22 26 26 30 31 24 31 31 29 27 24 34 32 30 18 33 28 31 27 24 25 26 28 10 24 23 36 31 28 29 19 19 26 44 41 16 24 22 48 26 14 20 30 48 32 26 11 27 11 21 26 10 18 31 17 26 31 21 26 31 7 31 48 48 48 44 43 44 30 19 31 34 21 32 19 7 7 20 13 17 25 32 32 25 19 26 16 10 12 16 30 39 37 39 24 16 23 11 30 29 9 5 14 29 9 31 24 10 24 6

Alignment Information

BAC End 1

BAC End 2

seq1: chr3_116846603_116847553
seq2: B6Ng01-337P09.b_52_995 (reverse)

seq1  TAGGGGAAGGACTGAAGGAGCTGAAGGGGTTTGCAACCTTATAGGAAGAA  50
      |||||||||||||||  |||||||||||| |||||||  |||| |||| |
seq2  TAGGGGAAGGACTGA--GAGCTGAAGGGG-TTGCAAC--TATA-GAAG-A  43

seq1  CAATA-TCAACCAACCAGAACCTCCAGAGCTTCCCAGGGACGAAACCATC  99
      ||||| |||||| ||||||||||||||||| | |||||||||||||||||
seq2  CAATATTCAACC-ACCAGAACCTCCAGAGC-TGCCAGGGACGAAACCATC  91

seq1  AACCAAAGAGTACACACGGAGCCACCCAAGGCT-CCAGCTGCATATGTAG  148
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AACCAAAGAGTACACACGGAGCCACCCAAGGCTCCCAGCTGCATATGTAG  141

seq1  CAGAGGATGGCCTTGTCATACATCAAGGAAGGAGAGACCC-TTGGTCTTG  197
      |||||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  CAGAGGATGGCC-TGTCATACATCAAGGAAGGAGAGACCCTTTGGTCTTG  190

seq1  AGAAGGCTCCATGCCCCAGTGTAGGGGAATGCTAGGGCGGGGAGGTGGGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTCCATGCCCCAGTGTAGGGGAATGCTAGGGCGGGGAGGTGGGA  240

seq1  GTAGGTAGGTGGGGGAGCACCCTAATAGAAACAGGGGCATGGGGATGGGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTAGGTGGGGGAGCACCCTAATAGAAACAGGGGCATGGGGATGGGA  290

seq1  TAGGGAGTACTCAGAGGGGAAACTGGTCAATGTAAACAAATAAAACAACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGTACTCAGAGGGGAAACTGGTCAATGTAAACAAATAAAACAACC  340

seq1  AATTAAAAAATCAAAAATCAGGAAAATAAAACAAAACAAAAAAATTAAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAAATCAAAAATCAGGAAAATAAAACAAAACAAAAAAATTAAAA  390

seq1  TAAAATGATACAAGTGGGATGGATGTATTGCTTTGTTTTTCTTTCAGAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGATACAAGTGGGATGGATGTATTGCTTTGTTTTTCTTTCAGAGG  440

seq1  TGCCAAGATAGAAGAAGGTCTGTGAATTGAGACAGGTAGAAGGTGGCAAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGATAGAAGAAGGTCTGTGAATTGAGACAGGTAGAAGGTGGCAAC  490

seq1  CGTGAGATGGCAATTGTTCTTCACAGTAGGTCAAGTCAACCTCCTGCTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGATGGCAATTGTTCTTCACAGTAGGTCAAGTCAACCTCCTGCTGG  540

seq1  ACAAACAGGCATAAACCACCTTCTGAGAATGCTAGAAATTAAACAATACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAGGCATAAACCACCTTCTGAGAATGCTAGAAATTAAACAATACA  590

seq1  AGAAAGAACTCCTGTAAAGCTCAAATGGCAGACTGGAAAGAGGAATTTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAACTCCTGTAAAGCTCAAATGGCAGACTGGAAAGAGGAATTTAC  640

seq1  TGCTCTTCCAGCCGCAGATTCTAAGGCTACACTATTTATGATGTCATTTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCCAGCCGCAGATTCTAAGGCTACACTATTTATGATGTCATTTG  690

seq1  TTGTTCTGACTTTTCCCCCAGTGCTGGGGATAAGGGATTCTAACAACTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGACTTTTCCCCCAGTGCTGGGGATAAGGGATTCTAACAACTTT  740

seq1  TTTTGTACTTTACGCTGGATTCTGCAAATAGCCTCTGAAGGAGACTGACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTACTTTACGCTGGATTCTGCAAATAGCCTCTGAAGGAGACTGACA  790

seq1  TTAAAGTAAAAATGATTTGAAACTTTATGCTTAAATAACAACTCACATAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTAAAAATGATTTGAAACTTTATGCTTAAATAACAACTCACATAT  840

seq1  ACAGGAAAACTGCGTGGCAGGCAATGCTCCCAGGCTTGGGAGGGTTTAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAACTGCGTGGCAGGCAATGCTCCCAGGCTTGGGAGGGTTTAGT  890

seq1  TTAGAAGAGTCTTCCATGATGCTCACAGCTTGTGAGATCACGTGACATGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGAGTCTTCCATGATGCTCACAGCTTGTGAGATCACGTGACATGA  940

seq1  ATTC  951
      ||||
seq2  ATTC  944

seq1: chr3_116739482_116740435
seq2: B6Ng01-337P09.g_65_1019

seq1  GAATTCTATCTCTGTGGATTTTTAGACATTTCAGTTTGTATGTGTTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCTCTGTGGATTTTTAGACATTTCAGTTTGTATGTGTTTCAT  50

seq1  CTAAAGCAGAATTTCTCAACATGAAGCTCTATTGACTTTGGGGCCAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCAGAATTTCTCAACATGAAGCTCTATTGACTTTGGGGCCAGATT  100

seq1  TTCCTTTGCTTTGTGAGGTTGTCTGTTGTTGTAAACTGCTCAGAAAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGCTTTGTGAGGTTGTCTGTTGTTGTAAACTGCTCAGAAAGATG  150

seq1  TCATGGCTAAATAAACCAATATCTCTACCTCTGTTAGTCAACAAAACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCTAAATAAACCAATATCTCTACCTCTGTTAGTCAACAAAACTAT  200

seq1  CCACACACATTACAATTCCCTGGTTGGTAAACTCTTCCCCACTTAAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACATTACAATTCCCTGGTTGGTAAACTCTTCCCCACTTAAGAAC  250

seq1  CATTGATCTAGGATTGGAGAGATGGCTCAGCCATTAAAGGCTAGGCTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATCTAGGATTGGAGAGATGGCTCAGCCATTAAAGGCTAGGCTCAC  300

seq1  AACCAAAAATAAGAACCACTGATCTAAAGTGAATTTATGGTGTGTAGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAAATAAGAACCACTGATCTAAAGTGAATTTATGGTGTGTAGATT  350

seq1  TCTACAAAGCAACTTCCTCCTTTCCATTCTTACACTACCCTCTCTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAGCAACTTCCTCCTTTCCATTCTTACACTACCCTCTCTCTTTC  400

seq1  TCTTGTTTTTCTTTCTTTGTTTTTTCTTTCTTCTTTTCTCCCCCCTGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTTTCTTTCTTTGTTTTTTCTTTCTTCTTTTCTCCCCCCTGCCC  450

seq1  CATTTTTCTGTGCTAAGACTTAGCCTAGGGCCCCGTGCTTGCTAGACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCTGTGCTAAGACTTAGCCTAGGGCCCCGTGCTTGCTAGACAAA  500

seq1  TACTTACTACTGAGCAATATACCCTGTCCAAGTGTAAGTTTTCTTTATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACTACTGAGCAATATACCCTGTCCAAGTGTAAGTTTTCTTTATGC  550

seq1  AAAGGGATCTATCATGATTACTCTATGAAAGACCCAACAAGCAGCTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGATCTATCATGATTACTCTATGAAAGACCCAACAAGCAGCTGAAA  600

seq1  AAAGTCAGATGCAGATATTTGCACCCAACCAGTGGACAGAAGCAGCTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGATGCAGATATTTGCACCCAACCAGTGGACAGAAGCAGCTGAC  650

seq1  CTCTGTTGTTGAATTAGGGAAGGCTGAAAGAAGCTGAGGAGAAGGGTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTGTTGAATTAGGGAAGGCTGAAAGAAGCTGAGGAGAAGGGTGAT  700

seq1  ACTGTAGGAGGACCAGCAGTCTCAATTAATTTGGACTCCTGAGATCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGGAGGACCAGCAGTCTCAATTAATTTGGACTCCTGAGATCTCTC  750

seq1  AAACACTGGACCACCAAACAGACAGCATACACCAGCTGATATGAGGCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGGACCACCAAACAGACAGCATACACCAGCTGATATGAGGCCCT  800

seq1  CAAGATACATACTGTAGAGGACTTCCGGGTCTGTGTTCATTCAGAGATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATACATACTGTAGAGGACTTCCGGGTCTGTGTTCATTCAGAGATGA  850

seq1  TGCACCTAACCCTCAAGAGACTGGAGGCCCCAGGGAATTTAGATGTCGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTAACCCTCAAGAGACTGGAGGCCCCAGGGAATTTAGATGTCGGG  900

seq1  TGTGGT-GGGGGGGTCAGGGCATCCACATGGAGAT-GGGGTGCGGGGTGA  948
      |||||| |||||||||||||||||||||||||||| ||||||| ||||||
seq2  TGTGGTGGGGGGGGTCAGGGCATCCACATGGAGATGGGGGTGC-GGGTGA  949

seq1  GGGGAG  954
      ||||||
seq2  GGGGAG  955

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information