BAC Information

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BAC

Clone NameB6Ng01-337P11
Chromosome3 (Build37)
Map Location 145,347,911 - 145,487,489
singlet/doubletdoublet
Overlap geneDdah1
Upstream geneSh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61
Downstream geneLOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337P11.bB6Ng01-337P11.g
ACCGA122417GA122418
length1,1231,063
definitionB6Ng01-337P11.b B6Ng01-337P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,486,358 - 145,487,489)(145,347,911 - 145,348,978)
sequence
gaattccatccacagaacccatgctggatggggaactgacatccacaaga
tgtcctctgacatcagcaagcagaccatggcacagacacggtgacacaca
tacacccacacgttaaaaatatgaaaaaaaaatgtaattaagatacttta
tgaagtagaatgtacttcctcaattactttatgattagaaagatatttgc
atcaatcttttctaaaacgaccaagattaggtatagtttcttctctaaag
tcccttagcgagagcacataaaaaccaactcaaatgaacaaagccttagc
agagagaacaaaatgctaaagcaacagtcatatggttcaataaaaataaa
aagtgagtaatagtttcagtattgaaagccatggaattacagtaatttca
taatctgtcaaaaacaggattcactaccatttattgctttgataagtgtt
tattgatcacctgagtgtccaagctcgatgcagatatatgtgtagtaagt
ttctcaaccagagaactaaataaaaactgctgagcatagcacattaaact
tgaagaattgtgaaatgggactaacaggaaaaaaatgaagctgtgtgctc
acatagaccaggagactacgccccagttagccttcacaaacagtcttcca
tcccaggaaaagcagaattagaacacacattccctttctcaaccgtgtgg
cacaattcctgatgaactagaaatgtcactgaggtgaaaagccaaggtta
agaactaacaagaaatcgactccactcagactatttggaaatagttaatt
agttaatagtcatatatgaacacatgcttaagctatcttctgaagttcct
ccattgcctgatattgcaaccatttctgacccctgaggaggaaccagcta
ccatctgactaaacccaaagggccacagaataaacatgacttggcatatg
aagacaggagggaggtccatgggcccaccatgacatgttctaagcaaggt
catttttaaaagtttccacaaatgcagatatgctttacatgttttctaac
tgttctgatagaaatctttaagacgacactatttacaacatgtcagattt
tccataaaaagatctatatcttt
gaattccagtcctgtgcagaggaagttagaaacgaaccccgctgtcgcta
tctccacaggcatctgtgtaggtgtgacagggtgaataggccctttggga
attttaaggggaatcctctagagccaaattcctcaatgagggtaaacttc
catcagctgtgtaaacagtggggcaatgtgtgaaggccagaggcagtctc
ctgatagtcggctactgtgctcaggtaagtaagaggagctgtggtccttc
cacccccaaggcccccaggatgagtcgggttttgtggctcccagtgagtg
ggtggctaggaattccctctccgcttcatctagtacagagggcagtctga
ctaagcgagatagcgctcgctcgctggctggagaaagccaacacccaacg
tggctcctggtgtctgagtgcctgaggagaacagtaactcctagctggcg
ctccaactagccactcactggcagccaccccagtggctcaagagatgcct
gtccagcaggacagcatgctctgagaactatttatttgactgttttattt
aacacaggacgttaattgcaattcatggatccggtttctttattccctac
accatctgaaggagggcagaaaacccaggaacgaggctatgttcctgtcc
agccctgccatgcccatgattacacatctgtccagtcttggtacacagcg
atgctaacctcaactcttcttcgtatggaaatctggatactgagtccagt
tctcaagcccataaattgttcagaaacgtctttattcctctgacatacaa
gttgtttagcttaaacgaagaaggaggagacataaaaactaggtaggtat
agtgctttagctgtatcagtgtgtaacacatttctcaagcctaggaacag
atcggcagaggtaaaataacagatctccttgttgtaaacatatttttaaa
tatcaaaaatgaaaaaaataaaacaaaaaataatgccactgcacaaagtc
acatgtctttggcttttagaacatttcttttctgtattcatcagtgatct
cctctttcgcgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145486358_145487489
seq2: B6Ng01-337P11.b_46_1168 (reverse)

seq1  AAAGATATAGGAATCTTTTTATGGAAAAATCTTGACAATGTTGTAAATAG  50
      ||||||||||  |||||||||||| |||||| |||| |||||||||||||
seq2  AAAGATATAG--ATCTTTTTATGG-AAAATC-TGAC-ATGTTGTAAATAG  45

seq1  TGTCGTCTTAAAGATTTCTTATCAAGAACAGTTAGAAAACATGTAAAGCA  100
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  TGTCGTCTTAAAGATTTC-TATC-AGAACAGTTAGAAAACATGTAAAGCA  93

seq1  TTAATTCTGCATTTTGTGGAAACTTTTAAAAATGACCTTGCTTAGAACAT  150
      |    |||||| ||||||||||||||||||||||||||||||||||||||
seq2  T---ATCTGCA-TTTGTGGAAACTTTTAAAAATGACCTTGCTTAGAACAT  139

seq1  GTCATGGTGGG-CCATGGACCTCCCTCCTGTCTTCATATGCCAAGTCATG  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGTGGGCCCATGGACCTCCCTCCTGTCTTCATATGCCAAGTCATG  189

seq1  TTTATTCTGTGGCCC-TTGGGTTTAGTCAGATGGTAGCTGGTTCCTCCTC  248
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTATTCTGTGGCCCTTTGGGTTTAGTCAGATGGTAGCTGGTTCCTCCTC  239

seq1  AGGGGTCAGAAATGGTTGCAATATCAGGCAATGGAGGAACTTCAGAAGAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCAGAAATGGTTGCAATATCAGGCAATGGAGGAACTTCAGAAGAT  289

seq1  AGCTTAAGCATGTGTTCATATATGACTATTAACTAATTAACTATTTCCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAAGCATGTGTTCATATATGACTATTAACTAATTAACTATTTCCAA  339

seq1  ATAGTCTGAGTGGAGTCGATTTCTTGTTAGTTCTTAACCTTGGCTTTTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTGAGTGGAGTCGATTTCTTGTTAGTTCTTAACCTTGGCTTTTCA  389

seq1  CCTCAGTGACATTTCTAGTTCATCAGGAATTGTGCCACACGGTTGAGAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTGACATTTCTAGTTCATCAGGAATTGTGCCACACGGTTGAGAAA  439

seq1  GGGAATGTGTGTTCTAATTCTGCTTTTCCTGGGATGGAAGACTGTTTGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGTGTGTTCTAATTCTGCTTTTCCTGGGATGGAAGACTGTTTGTG  489

seq1  AAGGCTAACTGGGGCGTAGTCTCCTGGTCTATGTGAGCACACAGCTTCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTAACTGGGGCGTAGTCTCCTGGTCTATGTGAGCACACAGCTTCAT  539

seq1  TTTTTTCCTGTTAGTCCCATTTCACAATTCTTCAAGTTTAATGTGCTATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCTGTTAGTCCCATTTCACAATTCTTCAAGTTTAATGTGCTATG  589

seq1  CTCAGCAGTTTTTATTTAGTTCTCTGGTTGAGAAACTTACTACACATATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGTTTTTATTTAGTTCTCTGGTTGAGAAACTTACTACACATATA  639

seq1  TCTGCATCGAGCTTGGACACTCAGGTGATCAATAAACACTTATCAAAGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATCGAGCTTGGACACTCAGGTGATCAATAAACACTTATCAAAGCA  689

seq1  ATAAATGGTAGTGAATCCTGTTTTTGACAGATTATGAAATTACTGTAATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGGTAGTGAATCCTGTTTTTGACAGATTATGAAATTACTGTAATT  739

seq1  CCATGGCTTTCAATACTGAAACTATTACTCACTTTTTATTTTTATTGAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTTTCAATACTGAAACTATTACTCACTTTTTATTTTTATTGAAC  789

seq1  CATATGACTGTTGCTTTAGCATTTTGTTCTCTCTGCTAAGGCTTTGTTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGACTGTTGCTTTAGCATTTTGTTCTCTCTGCTAAGGCTTTGTTCA  839

seq1  TTTGAGTTGGTTTTTATGTGCTCTCGCTAAGGGACTTTAGAGAAGAAACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTGGTTTTTATGTGCTCTCGCTAAGGGACTTTAGAGAAGAAACT  889

seq1  ATACCTAATCTTGGTCGTTTTAGAAAAGATTGATGCAAATATCTTTCTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTAATCTTGGTCGTTTTAGAAAAGATTGATGCAAATATCTTTCTAA  939

seq1  TCATAAAGTAATTGAGGAAGTACATTCTACTTCATAAAGTATCTTAATTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGTAATTGAGGAAGTACATTCTACTTCATAAAGTATCTTAATTA  989

seq1  CATTTTTTTTTCATATTTTTAACGTGTGGGTGTATGTGTGTCACCGTGTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTTTCATATTTTTAACGTGTGGGTGTATGTGTGTCACCGTGTC  1039

seq1  TGTGCCATGGTCTGCTTGCTGATGTCAGAGGACATCTTGTGGATGTCAGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCATGGTCTGCTTGCTGATGTCAGAGGACATCTTGTGGATGTCAGT  1089

seq1  TCCCCATCCAGCATGGGTTCTGTGGATGGAATTC  1132
      ||||||||||||||||||||||||||||||||||
seq2  TCCCCATCCAGCATGGGTTCTGTGGATGGAATTC  1123

seq1: chr3_145347911_145348978
seq2: B6Ng01-337P11.g_67_1129

seq1  GAATTCCAGTCCTGTGCAGAGGAAGTTAGAAACGAACCCCGCTGTCGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCCTGTGCAGAGGAAGTTAGAAACGAACCCCGCTGTCGCTA  50

seq1  TCTCCACAGGCATCTGTGTAGGTGTGACAGGGTGAATAGGCCCTTTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACAGGCATCTGTGTAGGTGTGACAGGGTGAATAGGCCCTTTGGGA  100

seq1  ATTTTAAGGGGAATCCTCTAGAGCCAAATTCCTCAATGAGGGTAAACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGGGGAATCCTCTAGAGCCAAATTCCTCAATGAGGGTAAACTTC  150

seq1  CATCAGCTGTGTAAACAGTGGGGCAATGTGTGAAGGCCAGAGGCAGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCTGTGTAAACAGTGGGGCAATGTGTGAAGGCCAGAGGCAGTCTC  200

seq1  CTGATAGTCGGCTACTGTGCTCAGGTAAGTAAGAGGAGCTGTGGTCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGTCGGCTACTGTGCTCAGGTAAGTAAGAGGAGCTGTGGTCCTTC  250

seq1  CACCCCCAAGGCCCCCAGGATGAGTCGGGTTTTGTGGCTCCCAGTGAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCAAGGCCCCCAGGATGAGTCGGGTTTTGTGGCTCCCAGTGAGTG  300

seq1  GGTGGCTAGGAATTCCCTCTCCGCTTCATCTAGTACAGAGGGCAGTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTAGGAATTCCCTCTCCGCTTCATCTAGTACAGAGGGCAGTCTGA  350

seq1  CTAAGCGAGATAGCGCTCGCTCGCTGGCTGGAGAAAGCCAACACCCAACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCGAGATAGCGCTCGCTCGCTGGCTGGAGAAAGCCAACACCCAACG  400

seq1  TGGCTCCTGGTGTCTGAGTGCCTGAGGAGAACAGTAACTCCTAGCTGGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCTGGTGTCTGAGTGCCTGAGGAGAACAGTAACTCCTAGCTGGCG  450

seq1  CTCCAACTAGCCACTCACTGGCAGCCACCCCAGTGGCTCAAGAGATGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACTAGCCACTCACTGGCAGCCACCCCAGTGGCTCAAGAGATGCCT  500

seq1  GTCCAGCAGGACAGCATGCTCTGAGAACTATTTATTTGACTGTTTTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCAGGACAGCATGCTCTGAGAACTATTTATTTGACTGTTTTATTT  550

seq1  AACACAGGACGTTAATTGCAATTCATGGATCCGGTTTCTTTATTCCCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGGACGTTAATTGCAATTCATGGATCCGGTTTCTTTATTCCCTAC  600

seq1  ACCATCTGAAGGAGGGCAGAAAACCCAGGAACGAGGCTATGTTCCTGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGAAGGAGGGCAGAAAACCCAGGAACGAGGCTATGTTCCTGTCC  650

seq1  AGCCCTGCCATGCCCATGATTACACATCTGTCCAGTCTTGGTACACAGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGCCATGCCCATGATTACACATCTGTCCAGTCTTGGTACACAGCG  700

seq1  ATGCTAACCTCAACTCTTCTTCGTATGGAAATCTGGATACTGAGTCCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAACCTCAACTCTTCTTCGTATGGAAATCTGGATACTGAGTCCAGT  750

seq1  TCTCAAGCCCATAAATTGTTCAGAAACGTCTTTATTCCTCTGACATACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGCCCATAAATTGTTCAGAAACGTCTTTATTCCTCTGACATACAA  800

seq1  GTTGTTTAGCTTAAACGAAGAAGGAGGAGACATAAAAACTAGGTAGGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTAGCTTAAACGAAGAAGGAGGAGACATAAAAACTAGGTAGGTAT  850

seq1  AGTGCTTTAGCTGTATCAGTGTGTAACACA-TTCTCAAGCCTAGGAACAG  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTGCTTTAGCTGTATCAGTGTGTAACACATTTCTCAAGCCTAGGAACAG  900

seq1  ATCGGCAAGAGGT-AAATAACAGATCTCCTTGTTGTAAACATA-TTTTAA  947
      |||||| |||||| ||||||||||||||||||||||||||||| ||||||
seq2  ATCGGC-AGAGGTAAAATAACAGATCTCCTTGTTGTAAACATATTTTTAA  949

seq1  ATATCAAAAAATGAAAAAAATAAAAACAAAAAATAATGCAACTGCCACAA  997
      ||||| ||||||||||||||| ||||||||||||||||| |||| ||| |
seq2  ATATC-AAAAATGAAAAAAAT-AAAACAAAAAATAATGCCACTG-CAC-A  995

seq1  AAGTCACAATGTCTTTGGCTTTTAG-ACATTTTCTTTCTGTATTCATCAG  1046
      ||||||| ||||||||||||||||| ||||||  ||||||||||||||||
seq2  AAGTCAC-ATGTCTTTGGCTTTTAGAACATTTCTTTTCTGTATTCATCAG  1044

seq1  TTGAATCTCCTCTTTCCGCGTA  1068
      |   ||||||||||| ||||||
seq2  T--GATCTCCTCTTT-CGCGTA  1063