BAC Information

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BAC

Clone NameB6Ng01-337P23
Chromosome3 (Build37)
Map Location 110,184,658 - 110,303,329
singlet/doubletdoublet
Overlap genenone
Upstream geneVav3, Ntng1, LOC100043181, LOC100043183, Prmt6
Downstream geneLOC100043190, LOC668712
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337P23.bB6Ng01-337P23.g
ACCGA122441GA122442
length1,136694
definitionB6Ng01-337P23.b B6Ng01-337P23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,184,658 - 110,185,785)(110,302,641 - 110,303,329)
sequence
gaattcttcttttagtttccttcatcatggtgtcttatctcagcagcaag
atgtaactaacatcattgcagaatgaaattacagagcatgattttaaaga
gcaggcctccttctagcattgtcatcttttatatttaccaacagaataca
ttctcacaaaaccaatatcaatagattattgtcatagtttcatagtgaat
caaatgaaactaaagttagaagtaagtagatgtggtaaatgttttagtca
gggtttctattcctgcacaaatatcatggccaagaagcaagttgtggaag
aaagggtttattcagcttacacattcacattgttgttcatcaccaaagga
agtcatgacagaaactcacacagggcaggaattagggctgatgcagaggc
catggagggatgttacttattggcttgcttctcctgcctttctcagcttg
ctttcttatagaactcaagactaccagcccagggatggcaccacccacta
tgggccctgcctcccttgatcactggttgagaaaatgacttacatctgta
tctcatggaggcatttcctcaagtgtagctcttttctctgtgataactcc
agctgtgtcaagttgacacacaaaaccagccagtacactaaatatggtat
gacatattaacaaaatcagctattatcaaatatattacttgtactatgta
actgatgtttttctattaactctataaatataaaattatttagtctttat
agtagccctgtaaagtaggtgggactgttagtctcctttaaacagaagaa
caagcaggcttggtgagttgaagtaatttgctcagagatcactcaatgta
cctaacaaccattaaccaaagttggtgtctacattgctactttagcatcc
tcttcccctttgcagatattgccatttccacttttacttcaatataacac
tgctttctctatttagggccttatataatgtcatattctgttgtctgcaa
gaaggaattacatgaatagtcatgtcattgggtttctagaataggcagag
tcattttccttgtgattgggttataaaatattactggaccataatcaaca
atgggatatggtaggtatttttatccattgcctatt

gaattctctcaggctcttgccttactggagaaataatggcagcagataat
ttcatatgaaggagaatcattcttttgtgaggatatggcaacttgtagga
tttgagtactccagttagtaccccacagacatcgaccttgagcagcagta
aatggacttattgaaagagaaacagacagaatgaaagttggaagcagaga
tatagaggaagatatggtaggagttggaggaagagaatgctagaaagaca
gaattatatttcagtgtatgaaattccaaatattaaaattatgtagtttt
tagttttgaattctttcatatttggtgtatttgatactcttatagataaa
tatgtagattattttgtgattaaatagcatttcctgttatgttaatatac
atactcagaagtctgtgaattattctcatttaccttttaattatatttaa
aatttatgggtatgtgtctgtctttatgagtttatgcaatgtgtatagaa
gagtagaaatgactatgtgcacagatgcttgaagtgggtgccaggtccac
tgtagttaacattacaagtgttttcttgatgctcagtttattatatgggt
gtgtggaactaaatcttgtttctcatgatagcattactagtatttgtaac
tgctgaaaccattttctcctgtctttgcccatctatttaaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_110184658_110185785
seq2: B6Ng01-337P23.b_47_1182

seq1  GAATTCTTCTTTTAGTTTCCTTCATCATGGTGTCTTATCTCAGCAGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTTTAGTTTCCTTCATCATGGTGTCTTATCTCAGCAGCAAG  50

seq1  ATGTAACTAACATCATTGCAGAATGAAATTACAGAGCATGATTTTAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACTAACATCATTGCAGAATGAAATTACAGAGCATGATTTTAAAGA  100

seq1  GCAGGCCTCCTTCTAGCATTGTCATCTTTTATATTTACCAACAGAATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCCTCCTTCTAGCATTGTCATCTTTTATATTTACCAACAGAATACA  150

seq1  TTCTCACAAAACCAATATCAATAGATTATTGTCATAGTTTCATAGTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACAAAACCAATATCAATAGATTATTGTCATAGTTTCATAGTGAAT  200

seq1  CAAATGAAACTAAAGTTAGAAGTAAGTAGATGTGGTAAATGTTTTAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAAACTAAAGTTAGAAGTAAGTAGATGTGGTAAATGTTTTAGTCA  250

seq1  GGGTTTCTATTCCTGCACAAATATCATGGCCAAGAAGCAAGTTGTGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTATTCCTGCACAAATATCATGGCCAAGAAGCAAGTTGTGGAAG  300

seq1  AAAGGGTTTATTCAGCTTACACATTCACATTGTTGTTCATCACCAAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTTTATTCAGCTTACACATTCACATTGTTGTTCATCACCAAAGGA  350

seq1  AGTCATGACAGAAACTCACACAGGGCAGGAATTAGGGCTGATGCAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGACAGAAACTCACACAGGGCAGGAATTAGGGCTGATGCAGAGGC  400

seq1  CATGGAGGGATGTTACTTATTGGCTTGCTTCTCCTGCCTTTCTCAGCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGGGATGTTACTTATTGGCTTGCTTCTCCTGCCTTTCTCAGCTTG  450

seq1  CTTTCTTATAGAACTCAAGACTACCAGCCCAGGGATGGCACCACCCACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTATAGAACTCAAGACTACCAGCCCAGGGATGGCACCACCCACTA  500

seq1  TGGGCCCTGCCTCCCTTGATCACTGGTTGAGAAAATGACTTACATCTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCTGCCTCCCTTGATCACTGGTTGAGAAAATGACTTACATCTGTA  550

seq1  TCTCATGGAGGCATTTCCTCAAGTGTAGCTCTTTTCTCTGTGATAACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGGAGGCATTTCCTCAAGTGTAGCTCTTTTCTCTGTGATAACTCC  600

seq1  AGCTGTGTCAAGTTGACACACAAAACCAGCCAGTACACTAAATATGGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTCAAGTTGACACACAAAACCAGCCAGTACACTAAATATGGTAT  650

seq1  GACATATTAACAAAATCAGCTATTATCAAATATATTACTTGTACTATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATTAACAAAATCAGCTATTATCAAATATATTACTTGTACTATGTA  700

seq1  ACTGATGTTTTTCTATTAACTCTATAAATATAAAATTATTTAGTCTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGTTTTTCTATTAACTCTATAAATATAAAATTATTTAGTCTTTAT  750

seq1  AGTAGCCCTGTAAAGTAGGTGGGACTGTTAGTCTCC-TTAAACAGAAGAA  799
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGTAGCCCTGTAAAGTAGGTGGGACTGTTAGTCTCCTTTAAACAGAAGAA  800

seq1  CAAGCAGGCTTGGTGAGTTGAAGTAATTTGCTCAGAGATCACTCAATGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGGCTTGGTGAGTTGAAGTAATTTGCTCAGAGATCACTCAATGTA  850

seq1  CCTAACAACCATTAACCAAAGTTGGTGTCTTACATTGCTACTTTAGCATC  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTAACAACCATTAACCAAAGTTGGTGTC-TACATTGCTACTTTAGCATC  899

seq1  CTCTTCCCCTTTGCAGATATTGCCA-TTCCAC-TTTACTTCAATATAACA  947
      ||||||||||||||||||||||||| |||||| |||||||||||||||||
seq2  CTCTTCCCCTTTGCAGATATTGCCATTTCCACTTTTACTTCAATATAACA  949

seq1  CTGCTTTCTCTATTTA-GGCCTTATATAATGTCATATTCTGTTGTCTGCA  996
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGCTTTCTCTATTTAGGGCCTTATATAATGTCATATTCTGTTGTCTGCA  999

seq1  --GAGGAATTACATG-ATAGTCAATGTCATTGGG-TTCTAG-ATAAGCAG  1041
         |||||||||||| |||||| ||||||||||| |||||| ||| ||||
seq2  AGAAGGAATTACATGAATAGTC-ATGTCATTGGGTTTCTAGAATAGGCAG  1048

seq1  AGTTCATTTTCCTTGTGATTGGTTATTAAAATATATCTTGAACATAATCA  1091
      || ||||||||||||||||||| |  ||||||||  || || ||||||||
seq2  AG-TCATTTTCCTTGTGATTGGGTTATAAAATATTACTGGACCATAATCA  1097

seq1  AACAAAGGGGATAT-GTA-GTATTTTAAT-CATTG-CTATT  1128
      |   || ||||||| ||| ||||||| || ||||| |||||
seq2  A--CAATGGGATATGGTAGGTATTTTTATCCATTGCCTATT  1136


seq1: chr3_110302641_110303329
seq2: B6Ng01-337P23.g_66_759 (reverse)

seq1  TTATTAAAATAGATGG--CAAGACAGGAG-AAATGG-TTCAGCAGTTACA  46
      ||||| ||||||||||   |||||||||| |||||| |||||||||||||
seq2  TTATTTAAATAGATGGGCAAAGACAGGAGAAAATGGTTTCAGCAGTTACA  50

seq1  AATACTAGTAATGCTATCATGAG-AACAAGATTTAGTTCCACACACCCAT  95
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATACTAGTAATGCTATCATGAGAAACAAGATTTAGTTCCACACACCCAT  100

seq1  ATAATAAACTGAGCATCAAGAAAACACTTGTAATGTTAACTACAGTGGAC  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAACTGAGCATCAAGAAAACACTTGTAATGTTAACTACAGTGGAC  150

seq1  CTGGCACCCACTTCAAGCATCTGTGCACATAGTCATTTCTACTCTTCTAT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACCCACTTCAAGCATCTGTGCACATAGTCATTTCTACTCTTCTAT  200

seq1  ACACATTGCATAAACTCATAAAGACAGACACATACCCATAAATTTTAAAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTGCATAAACTCATAAAGACAGACACATACCCATAAATTTTAAAT  250

seq1  ATAATTAAAAGGTAAATGAGAATAATTCACAGACTTCTGAGTATGTATAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAAAAGGTAAATGAGAATAATTCACAGACTTCTGAGTATGTATAT  300

seq1  TAACATAACAGGAAATGCTATTTAATCACAAAATAATCTACATATTTATC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAACAGGAAATGCTATTTAATCACAAAATAATCTACATATTTATC  350

seq1  TATAAGAGTATCAAATACACCAAATATGAAAGAATTCAAAACTAAAAACT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAGTATCAAATACACCAAATATGAAAGAATTCAAAACTAAAAACT  400

seq1  ACATAATTTTAATATTTGGAATTTCATACACTGAAATATAATTCTGTCTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATTTTAATATTTGGAATTTCATACACTGAAATATAATTCTGTCTT  450

seq1  TCTAGCATTCTCTTCCTCCAACTCCTACCATATCTTCCTCTATATCTCTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCATTCTCTTCCTCCAACTCCTACCATATCTTCCTCTATATCTCTG  500

seq1  CTTCCAACTTTCATTCTGTCTGTTTCTCTTTCAATAAGTCCATTTACTGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAACTTTCATTCTGTCTGTTTCTCTTTCAATAAGTCCATTTACTGC  550

seq1  TGCTCAAGGTCGATGTCTGTGGGGTACTAACTGGAGTACTCAAATCCTAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAGGTCGATGTCTGTGGGGTACTAACTGGAGTACTCAAATCCTAC  600

seq1  AAGTTGCCATATCCTCACAAAAGAATGATTCTCCTTCATATGAAATTATC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCCATATCCTCACAAAAGAATGATTCTCCTTCATATGAAATTATC  650

seq1  TGCTGCCATTATTTCTCCAGTAAGGCAAGAGCCTGAGAGAATTC  689
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCATTATTTCTCCAGTAAGGCAAGAGCCTGAGAGAATTC  694


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