BAC Information

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BAC

Clone NameB6Ng01-338D13
Chromosome3 (Build37)
Map Location 71,949,836 - 71,950,952
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667377, LOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338D13.bB6Ng01-338D13.g
ACCGA122594GA122595
length6551,110
definitionB6Ng01-338D13.b B6Ng01-338D13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgttcttgtggctgtcttctttttggtttgttgaaggattactt
tcttgttttttctagggcgtggtttctgtccttttcttgtttcttttttc
tgttattattctttgaagggctggattcgtggaaagataatgtgtgaatt
tggttttgtcatggaatactttggtttctccatctatggtaattgagagt
ttagctgggtatagtagcctggactggcatttgtgttctcttagtgtctg
tataacatctgtctgcctttcatagtctctgatgaaaagtctggtgtaat
tctgataggcctgcctttatatgttactttatatatttctttcctaggtt
ttctatctctagtgttgcttcattttgtgttttctttattgtgtctactt
tgttttttaggtctagtatggttttgttcaattccatcacctgtttggat
gtgttttcctgtttttctttaaggacttctacctgtttggttctgttttc
ctgtttttctttaaggacttgtaactctttagcagtgttctcctgtattt
ctttgctcctagtcctattgcaaactgatattctagagcaggttaatatc
catgagaggcctccccagttctgaggagtaaagggagaggggatgtggga
gggga

gaattccagtgaaggaccttgaggcagaaactgaagcagagactacggag
aatgttgtttcttattggtttgcactacatgtttgctcagctttaattct
catagagtgcaggcccaccttcctggagatgacaccaccctcagtagatc
gagtcctcctacataaattgccaactaagacaatgccttacaaatatggg
tacaggccaatctgatagagaaaattcttggctgaacatttcttcttccc
aagacagatctagatatatatcaaattagaaaactaccagatcacaccat
gtatatttgatacaaaaatctcatggaattttttctacagtctagggtaa
gaagatttccatttcttattctccattctgattcagaaaaaaaaacaaat
gggttttatataggaaaaaaattgtaacattaccctatatacagattgca
ttgcttattacattaaacactgttaaaaaagaagcactcagatacgataa
acagaacatacttgtagtctataaaaatcctcttaaacaatcttgtttat
ctaacaatcttgtttactttttatctaaaaggcataaataaggatgcatt
ataaagggacaatataatagtgtcacttataagggtgaataaaatagtca
taagatgtagatggagggaggaaactgggtggaagcagaaatggggaggg
aaatgtaagggattcatgatcagatatggggagaagcaggagggatggcc
agatggccatgagaatgaatggaaatctgcagctggcaggggtgaggagg
tagcagccatctgcaagatgagacagaaatctgggataatggaggtgtga
aaataaaatatatctattgtggcctttagataggtgggaatcccatggag
caataggaagatcacccacaaaacttttgatccaattttatcttgtctac
aagaaacgcatgcacaaggggatgaaacagagactgaagaatggcccacc
aattatccagaccaacttgagacccatcctatggccatcaccaatcctac
atatatgatactgtgtgcttgcagacagactctatggtgctgtctcttag
ggactccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_71949836_71950952
seq2: B6Ng01-338D13.g_68_1177

seq1  GAATTCCAGTGAAGGACCTTGAGGCAGAAACTGAAGCAGAGACTACGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGAAGGACCTTGAGGCAGAAACTGAAGCAGAGACTACGGAG  50

seq1  AATGTTGTTTCTTATTGGTTTGCACTACATGTTTGCTCAGCTTTAATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGTTTCTTATTGGTTTGCACTACATGTTTGCTCAGCTTTAATTCT  100

seq1  CATAGAGTGCAGGCCCACCTTCCTGGAGATGACACCACCCTCAGTAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGTGCAGGCCCACCTTCCTGGAGATGACACCACCCTCAGTAGATC  150

seq1  GAGTCCTCCTACATAAATTGCCAACTAAGACAATGCCTTACAAATATGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTCCTACATAAATTGCCAACTAAGACAATGCCTTACAAATATGGG  200

seq1  TACAGGCCAATCTGATAGAGAAAATTCTTGGCTGAACATTTCTTCTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCCAATCTGATAGAGAAAATTCTTGGCTGAACATTTCTTCTTCCC  250

seq1  AAGACAGATCTAGATATATATCAAATTAGAAAACTACCAGATCACACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGATCTAGATATATATCAAATTAGAAAACTACCAGATCACACCAT  300

seq1  GTATATTTGATACAAAAATCTCATGGAATTTTTTCTACAGTCTAGGGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTTGATACAAAAATCTCATGGAATTTTTTCTACAGTCTAGGGTAA  350

seq1  GAAGATTTCCATTTCTTATTCTCCATTCTGATTCAGAAAAAAAAACAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTTCCATTTCTTATTCTCCATTCTGATTCAGAAAAAAAAACAAAT  400

seq1  GGGTTTTATATAGGAAAAAAATTGTAACATTACCCTATATACAGATTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTATATAGGAAAAAAATTGTAACATTACCCTATATACAGATTGCA  450

seq1  TTGCTTATTACATTAAACACTGTTAAAAAAGAAGCACTCAGATACGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTATTACATTAAACACTGTTAAAAAAGAAGCACTCAGATACGATAA  500

seq1  ACAGAACATACTTGTAGTCTATAAAAATCCTCTTAAACAATCTTGTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACATACTTGTAGTCTATAAAAATCCTCTTAAACAATCTTGTTTAT  550

seq1  CTAACAATCTTGTTTACTTTTTATCTAAAAGGCATAAATAAGGATGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAATCTTGTTTACTTTTTATCTAAAAGGCATAAATAAGGATGCATT  600

seq1  ATAAAGGGACAATATAATAGTGTCACTTATAAGGGTGAATAAAATAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGGACAATATAATAGTGTCACTTATAAGGGTGAATAAAATAGTCA  650

seq1  TAAGATGTAGATGGAGGGAGGAAACTGGGTGGAAGCAGAAATGGGGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGTAGATGGAGGGAGGAAACTGGGTGGAAGCAGAAATGGGGAGGG  700

seq1  AAATGTAAGGGATTCATGATCAGATATGGGGAGAAGCAGGAGGGATGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAGGGATTCATGATCAGATATGGGGAGAAGCAGGAGGGATGGCC  750

seq1  AGATGGCCATGAGAATGAATGGAAATCTGCAGCTGGCAGGGGTGAGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCCATGAGAATGAATGGAAATCTGCAGCTGGCAGGGGTGAGGAGG  800

seq1  TAGCAGCCATCTGCAAGATGAGACAGAAATCTGGGATAATGGAGGTGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCCATCTGCAAGATGAGACAGAAATCTGGGATAATGGAGGTGTGA  850

seq1  AAATAAAATATATCTATTGTGGCCTTTAGATAGGTGGGAATCCCATGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATATATCTATTGTGGCCTTTAGATAGGTGGGAATCCCATGGAG  900

seq1  CAATAGGAAGATCACCCACAAAACTTTTGATCCAAATTTTATCTTGTCTA  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAATAGGAAGATCACCCACAAAACTTTTGATCC-AATTTTATCTTGTCTA  949

seq1  CAAGAAACGCATGCAC-AGGGGATGAAACAGAGACTG-AGAATGGCCAAC  998
      |||||||||||||||| |||||||||||||||||||| ||||||||| ||
seq2  CAAGAAACGCATGCACAAGGGGATGAAACAGAGACTGAAGAATGGCCCAC  999

seq1  CAA-TATCCAGACCAACTTGAGACCCATCCTATGGCAATCACCAATCCCT  1047
      ||| |||||||||||||||||||||||||||||||| ||||||||| |||
seq2  CAATTATCCAGACCAACTTGAGACCCATCCTATGGCCATCACCAAT-CCT  1048

seq1  AACAATATTAATGATACTGTTGTGCTTGCAGACAGGACTCTAATGTGGCT  1097
      |   ||||  ||||||||| |||||||||||||| |||||| |||  |||
seq2  A--CATAT--ATGATACTG-TGTGCTTGCAGACA-GACTCT-ATGGTGCT  1091

seq1  GTCCTCTTAGGGACTCCACC  1117
      || |||||||||||||||||
seq2  GT-CTCTTAGGGACTCCACC  1110


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