BAC Information

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BAC

Clone NameB6Ng01-338G19
Chromosome3 (Build37)
Map Location 16,616,453 - 16,742,741
singlet/doubletdoublet
Overlap geneLOC100040034
Upstream geneLOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3
Downstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338G19.bB6Ng01-338G19.g
ACCGA122735GA122736
length1,1341,188
definitionB6Ng01-338G19.b B6Ng01-338G19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,741,969 - 16,742,741)(16,616,453 - 16,617,675)
sequence
gaattcttttcatatatatatatatatatatatatatatatatatatata
tatataagttatttacatttcaaatgttttctcctttaccgatttccccc
tccagaaactccctatcccattcctgctcctcctgcttctgtgagggtgt
gcccccacccagccacccacccactcctgcctcccctcccttgcattctc
ctacaatggggcatctagtcttcactggatcaagggcttctcctcccatt
gatgcccaacaaggccatcctttgctacagatatggctggagtcatgggt
ccctgcatgtgtgctccttagcactggttctattgttgagtagctgaaaa
aaatttaaatctataactagaattttgtagtttaagtcaattacatatgt
ttatagggcaggaagactgtttacaaacatggaatttcagattagtctat
ttaataatatggcctgagtgcgtatctcagtatatatagaccctccaaat
tctttctcgagtctttttttttattattctttgagaagttcatatatttt
gttcatatccatctccctcccctgacttctcccattttcctcacaaacct
accgacctcacatcacgttctctctatcactcttccaaaacaaggagaca
tggagggcagtttttgttggccaagtattcctgagaatggcatgctgtgg
agtgtgggttgatacacttaatatcacttcaatggaaaaaaatgttttcc
tataccagcagcaatcgaaggtcagagtctccttacctaggggtagagct
tcatgcctaccttgtatccaccatgttcaggttctgtctggcttgcgctg
gccttgttcaagttgtgtgagtttataattgccatctcctgcaagaggat
gcttctctggtgagtgttgggtttctcgagtcttttaagcaacgccaatt
tactcaactatgcttgttttctagataaaaacaggaccaccaagctagcc
actaactctttgttctacagcaatgtcctgcctgcaaaaacgtaatgcac
ctggaaatttttaattaatataattaatttatctggtggggattacaaat
cggataccaattggatgagcccactcttaccaga

gaattcatgacaaaacaatttgttgaaacagtaaaataacaattccatca
aattaaatacaatatctcaaaaaccaaacgcaaaataaaaatgggaattg
tatttttagtatctatgacacagttctgtttgtgtttcacaaagtgaaga
atcacaagtgaagcctgaagtcatggctctcactcacgtaaaaataacat
cagggacagacagatttcccacaagacaaagtttccagagatggatttta
ttgacttattttctctcccacctccagcgtgggcttttatatccattctt
ccttttgttagaacagacagaatacatttgatgattgagcaatttgcagt
aaagcaggatctgactgggagttctaaaggtacagaggttaagaggcccc
tgctggtttgatgaaagcccactaaggactgtctttggacaagaaactgg
aaaagtccctggaacctctcctgaaacctttattcttatttgtctgtgtt
gagtttacctatcctgtcttctttttcaattttttttttagagtctaact
tgcttaatatgtaaataattccttaaaatcaatcctagataatgtaatta
tgaaatataataatctataggaaaaaatattatggcttgttttaaaatac
catggctgtgtctcacacattgaagataatttgagaaggcacctttctgt
atcaactctgtgaataccccaaaaatcttgtatactgagataataaaatg
taagataataatcacattcgcatgcacagtaaacagaaatttgatttttc
atgggaagtttgatactattaaactttgtatgcagtgacttttgataaaa
catctgtatttaaaagcttactttataaatgttttcacatttgtagcaat
gtgtatttttagttagtaatcattttgcatacaaatatgagtacatataa
gtggtgatgtattactgaataatatatagactctggattctgtgaaactc
ttaaaaggagaaattagactaaatcatactataagaaaattctagcattt
aatgagactgatattcatattagttataaataattacacatagtactgga
tattgttattcaatttctcctcttttaagaggctacaagatctagccatg
tatacttcgagagagtgaaagagaaattttaccacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_16741969_16742741
seq2: B6Ng01-338G19.b_409_1176 (reverse)

seq1  TCTGGT-AGAGTGGGCTTTAATTCAAATTGGTTATCGATTTGTTAATCCC  49
      |||||| ||||||||||     || |||||||   |||||||| |  |||
seq2  TCTGGTAAGAGTGGGCT---CATCCAATTGGTATCCGATTTGTAATCCCC  47

seq1  A-CAGATAGATTAATTAATTAATTAATTAAAAAATTCCA-GTGCATTAAC  97
      | |||||| ||||||||    |||||||||||| ||||| ||||||| ||
seq2  ACCAGATAAATTAATTA---TATTAATTAAAAATTTCCAGGTGCATT-AC  93

seq1  GTATTTTGCAGGCAGGACATTGCTGTAGAACAAAGAGTTAGTGGCTAGCT  147
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GT-TTTTGCAGGCAGGACATTGCTGTAGAACAAAGAGTTAGTGGCTAGCT  142

seq1  TGGTGGTCCTGTTTTTATCTAGAAAACAAGCATAGTTGAGTAAATTGGCG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTCCTGTTTTTATCTAGAAAACAAGCATAGTTGAGTAAATTGGCG  192

seq1  TTGCTTAAAAGACTCGAGAAACCCAACACTCACCAGAGAAGCATCCTCTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAAAAGACTCGAGAAACCCAACACTCACCAGAGAAGCATCCTCTT  242

seq1  GCAGGAGATGGCAATTATAAACTCACACAACTTGAACAAGGCCAGCGCAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGATGGCAATTATAAACTCACACAACTTGAACAAGGCCAGCGCAA  292

seq1  GCCAGACAGAACCTGAACATGGTGGATACAAGGTAGGCATGAAGCTCTAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACAGAACCTGAACATGGTGGATACAAGGTAGGCATGAAGCTCTAC  342

seq1  CCCTAGGTAAGGAGACTCTGACCTTCGATTGCTGCTGGTATAGGAAAACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGGTAAGGAGACTCTGACCTTCGATTGCTGCTGGTATAGGAAAACA  392

seq1  TTTTTTTCCATTGAAGTGATATTAAGTGTATCAACCCACACTCCACAGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCCATTGAAGTGATATTAAGTGTATCAACCCACACTCCACAGCA  442

seq1  TGCCATTCTCAGGAATACTTGGCCAACAAAAACTGCCCTCCATGTCTCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTCTCAGGAATACTTGGCCAACAAAAACTGCCCTCCATGTCTCCT  492

seq1  TGTTTTGGAAGAGTGATAGAGAGAACGTGATGTGAGGTCGGTAGGTTTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGAAGAGTGATAGAGAGAACGTGATGTGAGGTCGGTAGGTTTGT  542

seq1  GAGGAAAATGGGAGAAGTCAGGGGAGGGAGATGGATATGAACAAAATATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAATGGGAGAAGTCAGGGGAGGGAGATGGATATGAACAAAATATA  592

seq1  TGAACTTCTCAAAGAATAATAAAAAAAAAGACTCGAGAAAGAATTTGGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTCTCAAAGAATAATAAAAAAAAAGACTCGAGAAAGAATTTGGAG  642

seq1  GGTCTATATATACTGAGATACGCACTCAGGCCATATTATTAAATAGACTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTATATATACTGAGATACGCACTCAGGCCATATTATTAAATAGACTA  692

seq1  ATCTGAAATTCCATGTTTGTAAACAGTCTTCCTGCCCTATAAACATATGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAATTCCATGTTTGTAAACAGTCTTCCTGCCCTATAAACATATGT  742

seq1  AATTGACTTAAACTACAAAATTCTAG  773
      ||||||||||||||||||||||||||
seq2  AATTGACTTAAACTACAAAATTCTAG  768


seq1: chr3_16616453_16617675
seq2: B6Ng01-338G19.g_68_1255

seq1  GAATTCATGACAAAACAATTTGTTGAAACAGTAAAATAACAATTCCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACAAAACAATTTGTTGAAACAGTAAAATAACAATTCCATCA  50

seq1  AATTAAATACAATATCTCAAAAACCAAACGCAAAATAAAAATGGGAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATACAATATCTCAAAAACCAAACGCAAAATAAAAATGGGAATTG  100

seq1  TATTTTTAGTATCTATGACACAGTTCTGTTTGTGTTTCACAAAGTGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAGTATCTATGACACAGTTCTGTTTGTGTTTCACAAAGTGAAGA  150

seq1  ATCACAAGTGAAGCCTGAAGTCATGGCTCTCACTCACGTAAAAATAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAGTGAAGCCTGAAGTCATGGCTCTCACTCACGTAAAAATAACAT  200

seq1  CAGGGACAGACAGATTTCCCACAAGACAAAGTTTCCAGAGATGGATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACAGACAGATTTCCCACAAGACAAAGTTTCCAGAGATGGATTTTA  250

seq1  TTGACTTATTTTCTCTCCCACCTCCAGCGTGGGCTTTTATATCCATTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTATTTTCTCTCCCACCTCCAGCGTGGGCTTTTATATCCATTCTT  300

seq1  CCTTTTGTTAGAACAGACAGAATACATTTGATGATTGAGCAATTTGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTTAGAACAGACAGAATACATTTGATGATTGAGCAATTTGCAGT  350

seq1  AAAGCAGGATCTGACTGGGAGTTCTAAAGGTACAGAGGTTAAGAGGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGATCTGACTGGGAGTTCTAAAGGTACAGAGGTTAAGAGGCCCC  400

seq1  TGCTGGTTTGATGAAAGCCCACTAAGGACTGTCTTTGGACAAGAAACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTTTGATGAAAGCCCACTAAGGACTGTCTTTGGACAAGAAACTGG  450

seq1  AAAAGTCCCTGGAACCTCTCCTGAAACCTTTATTCTTATTTGTCTGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCCCTGGAACCTCTCCTGAAACCTTTATTCTTATTTGTCTGTGTT  500

seq1  GAGTTTACCTATCCTGTCTTCTTTTTCAATTTTTTTTTTAGAGTCTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTACCTATCCTGTCTTCTTTTTCAATTTTTTTTTTAGAGTCTAACT  550

seq1  TGCTTAATATGTAAATAATTCCTTAAAATCAATCCTAGATAATGTAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAATATGTAAATAATTCCTTAAAATCAATCCTAGATAATGTAATTA  600

seq1  TGAAATATAATAATCTATAGGAAAAAATATTATGGCTTGTTTTAAAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATAATAATCTATAGGAAAAAATATTATGGCTTGTTTTAAAATAC  650

seq1  CATGGCTGTGTCTCACACATTGAAGATAATTTGAGAAGGCACCTTTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTGTGTCTCACACATTGAAGATAATTTGAGAAGGCACCTTTCTGT  700

seq1  ATCAACTCTGTGAATACCCCAAAAATCTTGTATACTGAGATAATAAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTCTGTGAATACCCCAAAAATCTTGTATACTGAGATAATAAAATG  750

seq1  TAAGATAATAATCACATTCGCATGCACAGTAAACAGAAATTTGATTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAATAATCACATTCGCATGCACAGTAAACAGAAATTTGATTTTTC  800

seq1  ATGGGAAGTTTGATACTATTAAACTTTGTATGCAGTGACTTTTGATAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAGTTTGATACTATTAAACTTTGTATGCAGTGACTTTTGATAAAA  850

seq1  CATCTGTATTTAAAAGCTTACTTTATAAATGTTTTCACATTTGTAGCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTATTTAAAAGCTTACTTTATAAATGTTTTCACATTTGTAGCAAT  900

seq1  GTGTATTTTTAGTTAGTAATCATTTTGCAATAACAAAATAATGAGTACAA  950
      |||||||||||||||||||||||||||||   |||||   |||||||| |
seq2  GTGTATTTTTAGTTAGTAATCATTTTGCA--TACAAA--TATGAGTAC-A  945

seq1  TATAAGTGGTGATGTATTACTGAATAAATATATAGACTCTGGAATTCTGT  1000
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  TATAAGTGGTGATGTATTACTGAAT-AATATATAGACTCTGG-ATTCTGT  993

seq1  GAAACTCTTAAAAAGGAGAAATTAGACTAAATCATACTTATAAAGGAAAA  1050
      ||||||||| ||||||||||||||||||||||||||| |||||    |||
seq2  GAAACTCTT-AAAAGGAGAAATTAGACTAAATCATAC-TATAA---GAAA  1038

seq1  ATTCTAAGCCATTTTAAATGAAGACATGATATTCATA-TAGTATATAAAA  1099
      ||||||   |||||  |||| |||| ||||||||||| |||| ||| |||
seq2  ATTCTA--GCATTT--AATG-AGAC-TGATATTCATATTAGT-TAT-AAA  1080

seq1  TATATACCACATAAGTACT-GATATGTATATTCAATTTCT-CTCTTTTTA  1147
      || ||  ||||| |||||| |||||   |||||||||||| |||||||  
seq2  TA-ATTACACAT-AGTACTGGATATTGTTATTCAATTTCTCCTCTTTT--  1126

seq1  AAAGAAGCATACACAAGAATCTAGTGCCAGTGATTAAATTTCCAGAAGAG  1197
       |||| ||    ||||| |||||  |||| ||  || | ||| || ||||
seq2  -AAGAGGC---TACAAG-ATCTA--GCCA-TG--TATACTTCGAG-AGAG  1165

seq1  TGAAAAATGAAGAAATTTTA-CACTTT  1223
      |||||     |||||||||| ||||||
seq2  TGAAA----GAGAAATTTTACCACTTT  1188


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