BAC Information

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BAC

Clone NameB6Ng01-338H02
Chromosome3 (Build37)
Map Location 147,569,837 - 147,761,684
singlet/doubletdoublet
Overlap genenone
Upstream geneTtll7, Ppia-ps3_1528.1
Downstream geneLOC100040354, Lphn2, LOC100040368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338H02.bB6Ng01-338H02.g
ACCGA122745GA122746
length1841,131
definitionB6Ng01-338H02.b B6Ng01-338H02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,761,501 - 147,761,684)(147,569,837 - 147,570,947)
sequence
aagtttattcatgttctaaaattgattaatttcttgtataaggtataatt
atccgtggcttcatatcatatccaattatatcatttctggggctcaaatg
tagttctctctctctctctctctctctctctctctctctctctctctctc
tgtgtgtggtgtgtgtgtgtgtgtgtgtgtgtgc

gaattcattccacggcagagattaagggggaagaagcagatcacatgggg
cctcatagatcattggaaattgttttccagaggttctttggaactctttg
cacaagagagtgttatgattctgttttataagagggcatagcatctttct
tccctttatttttatttatttatttttttttgttttggtgtttcacttag
gcttgaaatggtttgagaccaaagctaagaaaatacttgagtctccaatg
tcaactttgaatactggttttgaatataattggaataatttgcctgaatt
tattaattgaattctgtatcacaaaccttggaattaaaacttccttattt
aacatgcaaatctatgcagaaacatgcaaaacactattcataaagcaact
gaaacataccttcaggctttcctatagggggtcaaagcaggaagatggga
tgcaaggaacataaattctttaaagagagtttttgcttgacctagtagaa
gaagatatatactgaatgtaagtccgtaaactggctagttaagccaaaca
tggaataaagaagatttcgatttaattacacaaattcctactgcgtactt
ctaaagtatactaatgagctaatagctaaatatgtaaagatgtctaactg
ccactatggaaaaactgttctgcatatatatgccaagggtttttggcaga
gaacacttccatttaaccagaaattatcctgcccaatacaaaaatctaat
ttaatctttgtttaatgtcatcaagataggatgagtggatgcggggagca
tttggaagcagttagagtttatgtattgacattatcatcaaggctaaagt
taatcgttacatttctataatatgcattatttcaagattctgctaataac
caaatatgattagtattattatttatgggctcagactgttgcactataag
cttcattggatatcattatcaaaaccattccacccagttgacaccttata
cattattgactagggccctaaggaccattcattttgtgttatgggttcag
agaaaaaccttttaaatttcagtccaggaatttatttttcattgcaccag
attgaagaaacaggtcttcattgggagtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_147761501_147761684
seq2: B6Ng01-338H02.b_51_234 (reverse)

seq1  GCACACACACACACACACACACACACCACACACAGAGAGAGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACACACACACACACACACACCACACACAGAGAGAGAGAGAGAGA  50

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACTACATTTGAGCCCCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACTACATTTGAGCCCCAGAA  100

seq1  ATGATATAATTGGATATGATATGAAGCCACGGATAATTATACCTTATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATAATTGGATATGATATGAAGCCACGGATAATTATACCTTATACA  150

seq1  AGAAATTAATCAATTTTAGAACATGAATAAACTT  184
      ||||||||||||||||||||||||||||||||||
seq2  AGAAATTAATCAATTTTAGAACATGAATAAACTT  184


seq1: chr3_147569837_147570947
seq2: B6Ng01-338H02.g_64_1194

seq1  GAATTCATTCCACGGCAGAGATTAAGGGGGAAGAAGCAGATCACATGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCACGGCAGAGATTAAGGGGGAAGAAGCAGATCACATGGGG  50

seq1  CCTCATAGATCATTGGAAATTGTTTTCCAGAGGTTCTTTGGAACTCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATAGATCATTGGAAATTGTTTTCCAGAGGTTCTTTGGAACTCTTTG  100

seq1  CACAAGAGAGTGTTATGATTCTGTTTTATAAGAGGGCATAGCATCTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGAGTGTTATGATTCTGTTTTATAAGAGGGCATAGCATCTTTCT  150

seq1  TCCCTTTATTTTTATTTATTTATTTTTTTTTGTTTTGGTGTTTCACTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTATTTTTATTTATTTATTTTTTTTTGTTTTGGTGTTTCACTTAG  200

seq1  GCTTGAAATGGTTTGAGACCAAAGCTAAGAAAATACTTGAGTCTCCAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAATGGTTTGAGACCAAAGCTAAGAAAATACTTGAGTCTCCAATG  250

seq1  TCAACTTTGAATACTGGTTTTGAATATAATTGGAATAATTTGCCTGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTTGAATACTGGTTTTGAATATAATTGGAATAATTTGCCTGAATT  300

seq1  TATTAATTGAATTCTGTATCACAAACCTTGGAATTAAAACTTCCTTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTGAATTCTGTATCACAAACCTTGGAATTAAAACTTCCTTATTT  350

seq1  AACATGCAAATCTATGCAGAAACATGCAAAACACTATTCATAAAGCAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCAAATCTATGCAGAAACATGCAAAACACTATTCATAAAGCAACT  400

seq1  GAAACATACCTTCAGGCTTTCCTATAGGGGGTCAAAGCAGGAAGATGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATACCTTCAGGCTTTCCTATAGGGGGTCAAAGCAGGAAGATGGGA  450

seq1  TGCAAGGAACATAAATTCTTTAAAGAGAGTTTTTGCTTGACCTAGTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGAACATAAATTCTTTAAAGAGAGTTTTTGCTTGACCTAGTAGAA  500

seq1  GAAGATATATACTGAATGTAAGTCCGTAAACTGGCTAGTTAAGCCAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATATATACTGAATGTAAGTCCGTAAACTGGCTAGTTAAGCCAAACA  550

seq1  TGGAATAAAGAAGATTTCGATTTAATTACACAAATTCCTACTGCGTACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAAAGAAGATTTCGATTTAATTACACAAATTCCTACTGCGTACTT  600

seq1  CTAAAGTATACTAATGAGCTAATAGCT-AATATGTAAAGATGTCTAACTG  649
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTAAAGTATACTAATGAGCTAATAGCTAAATATGTAAAGATGTCTAACTG  650

seq1  CCACTATGGAAAAACTGTTCTGCATATATATGCCAAGGGTTTTTGGCAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATGGAAAAACTGTTCTGCATATATATGCCAAGGGTTTTTGGCAGA  700

seq1  GAACACTTCCATTTAACCAGAAATTATCCTGCCCAATACAAAAATCTAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTCCATTTAACCAGAAATTATCCTGCCCAATACAAAAATCTAAT  750

seq1  TTAATCTTTGTTTAATGTCATCAAGATAGGATGAGTGGATGCGGGGAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTTGTTTAATGTCATCAAGATAGGATGAGTGGATGCGGGGAGCA  800

seq1  TTTGGAAGCAGTTAGAGTTTATGTATTGACATTATCATCAAGGCT-AAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTGGAAGCAGTTAGAGTTTATGTATTGACATTATCATCAAGGCTAAAGT  850

seq1  TAATCGTTACAATTCTATAATATGCATTATTTCAAGATTCTGCTAATAAC  898
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAATCGTTACATTTCTATAATATGCATTATTTCAAGATTCTGCTAATAAC  900

seq1  CAAAATATGATTAGTATTATTA-TTATGGGCTCAGACTGTTGCACTATAA  947
      | |||||||||||||||||||| |||||||||||||||||||||||||||
seq2  C-AAATATGATTAGTATTATTATTTATGGGCTCAGACTGTTGCACTATAA  949

seq1  GC-TCATT-GATATCA-TATCAAA--CATTCCACCCAGTGAACACC-TAT  991
      || ||||| ||||||| |||||||  |||||||||||||  ||||| |||
seq2  GCTTCATTGGATATCATTATCAAAACCATTCCACCCAGTTGACACCTTAT  999

seq1  AACATATTGACAAGGGCCCT-AGGACCA-TCA-TTTGTG-TATGGGTTCA  1037
      |   ||||||| |||||||| ||||||| ||| |||||| ||||||||||
seq2  ACATTATTGACTAGGGCCCTAAGGACCATTCATTTTGTGTTATGGGTTCA  1049

seq1  GAG-AGAACCTTT--AAATTCA-TCCAGG-ATATA-TTTTCATTGCA-CA  1080
      ||| | |||||||  || |||| |||||| || || ||||||||||| ||
seq2  GAGAAAAACCTTTTAAATTTCAGTCCAGGAATTTATTTTTCATTGCACCA  1099

seq1  GA-TGAAG-AACAGGTCTCAATTTGGGAGTGGT  1111
      || ||||| |||||||||  | |||||||||||
seq2  GATTGAAGAAACAGGTCTTCA-TTGGGAGTGGT  1131


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