BAC Information

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BAC

Clone NameB6Ng01-338N16
Chromosome13 (Build37)3 (Build37)
Map Location 17,554,490 - 17,555,026106,524,093 - 106,525,057
singlet/doubletsingletsinglet
Overlap gene5033411D12Rik
Upstream geneLOC665191
Downstream gene2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338N16.bB6Ng01-338N16.g
ACCGA123018GA123019
length1,065970
definitionB6Ng01-338N16.b B6Ng01-338N16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,554,490 - 17,555,026)(106,524,093 - 106,525,057)
sequence
gaattctctggtggaatttttagggtcacttatatatactatcatatcat
ctgcaaaaagtgatattttgacttcttcctttccaatttgtatccccttg
atcaccttttgttgtctaattgctctggctaggacttcaagtacaatgtt
gaataggtagggagagagtagacagccttgtttagtccctgattttagtt
tgattacttccaccttctcaccatttactttgatgttggctactggtttg
ctgtagattgcttttttcatgtttaggtatgggccttgaattcctgatct
ttgccagacttttatcacgaatgggttttgggttttgtcaaatgctttct
cagcatctaataagatgatcatgtggtttttgtctttgagtttgtttata
tgctggattacgttgatggatttccgtatattgaaccatccctgcattcc
tgtgatgaaacctacctggtcacgatggatgattgttttgaaatgttctt
ggattcggttaggaagaactttattgaggatttttgcatcaatattcatt
atggatattggtctgaagttctctatctttgtggggtctttttgtggttt
aggtatcagagtaattgtggcttcatagaatgagttgggtagagtacctt
ctgtttctattttgtggaatagtttgtgaagaactagaattagatcttct
ttgaaagtctgatagaactctgcactaaacccatctggtcctgggctttt
tttggttgggagactattagtgactgcctctatttctttgacggatatag
ggctgtttagatcattaacctgatcttgattcaactttggtacctggtat
ctgtctagaaacttctttattttatccaggttctccagttttgatgagta
tagccttttgtagaaggatctgatggtgttttggatttcttaaggatctg
ttgttatgtctcccttttcaatttctgatttgttatttgaatgtttctct
gtgccctctagtgagtctggctaacgtttgtctatcttgttgaatttctc
caagaatccagcttc

gaattcttagagctggtttctggaaattaagagtttcaaaaagtttatac
aggggatttaatgcacagacactcaaagaattgaatacatgacagtaaga
tacagttttaactgaggtgttagtgtgggaatggagaaaatggttaatcg
attaatgtagagcaaaacttcaagaaacagaaaaaaataatcacttctag
ccatgagaagggagataaaggttttcaacaatttatggcaactaccaaat
gcctatctgtgtctactgaataaaactgctaaggaggacattattacatt
ggcttgcaaaagcgcatgtacaagtgcagacaatttaagcctgacaccgg
aagtatttcatttcatgtaggcagtgaaagcactttctcttttagttcct
cctttgatccggaagaagagacctcaaccttcgctgtcgattggaccacg
tcataagggcggggccatggcgatccattcgccttggtaaccatatgtga
cgtagctgtatgcctaggatccctggctctaggagctcggttttagtggg
cgcagactccgatcaggccctgtcgtgggtggtgctattgatgccacgcc
ccccacgtcctctctgactggctgtgatgcgtcacgtagccagaagagac
tcgccggaaaactgtgagcttgcctgaggtaggagtcttccggcttctac
agccacttcccacggaagctgggggagccgccctctcaactatctcccgt
cacacccttctgttcgctcgcctcagacgctgcccttccacacccgtgct
ctggttcgcgcctacttggggacgctgtccccccagttattcactgccct
atccctcccacccatctaaaatgtctaatagtctccagagcgtcattctg
aaaaccgcagaggaaaagtcaggctcggcggctggtaagtaccagttccc
aagttcttcaggcggcccgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_17554490_17555026
seq2: B6Ng01-338N16.b_575_1109 (reverse)

seq1  GGAGCT-GATTCTTTGAGAAAATCAACAAGATAGACAAACCCTTAGCCAG  49
      | |||| ||||||| |||||| ||||||||||||||||| | ||||||||
seq2  GAAGCTGGATTCTTGGAGAAATTCAACAAGATAGACAAA-CGTTAGCCAG  49

seq1  ACTCAATAGAGGGCACAGGAAAAGCATTCTAATTAACAAAATCAGAAA-T  98
      ||||| ||||||||||| || || ||||| || |||| |||||||||| |
seq2  ACTCACTAGAGGGCACA-GAGAAACATTC-AAATAAC-AAATCAGAAATT  96

seq1  GAAAAGGCAGACATAACAACAAATCCTGAAGAAATCCAAAACACCATCAG  148
      ||||||| ||||||||||||| ||||| ||||||||||||||||||||||
seq2  GAAAAGGGAGACATAACAACAGATCCTTAAGAAATCCAAAACACCATCAG  146

seq1  ATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAA  198
      ||||||||||||||||||||||||| |||||||||| ||||||||  |||
seq2  ATCCTTCTACAAAAGGCTATACTCATCAAAACTGGAGAACCTGGATAAAA  196

seq1  TGGACAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATAAAGATCAG  248
      |  | |||||||||||||||||||||||||||||||| ||| ||||||||
seq2  TAAAGAAGTTTCTAGACAGATACCAGGTACCAAAGTTGAATCAAGATCAG  246

seq1  GTTAATGATCTAAACAGTCCTATATCTCCTAAAGAAATAGAAGCAGTCAT  298
      ||||||||||||||||| ||||||||    ||||||||||| ||||||| 
seq2  GTTAATGATCTAAACAGCCCTATATCCGTCAAAGAAATAGAGGCAGTCAC  296

seq1  TAATAGTCTCCCAACCAAAATAAGCCCAGAACCAGATGGGTTTAGTTCAG  348
      |||||||||||||||||||| |||||||| |||||||||||||||| |||
seq2  TAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAG  346

seq1  AGTTCTATCAGACCTTCAGAGAAGATCTAATCCCAGTTCTGCACAAACTA  398
      ||||||||||||| |||| |||||||||||| | |||||| |||||||||
seq2  AGTTCTATCAGACTTTCAAAGAAGATCTAATTCTAGTTCTTCACAAACTA  396

seq1  TTCCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTCTATGAAGC  448
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  TTCCACAAAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAGC  446

seq1  CACAATTACTCTGATACCTTGACCACAAAAAGACCCAACTAAGATAAAGA  498
      |||||||||||||||||||  ||||||||||||||| || |||||| |||
seq2  CACAATTACTCTGATACCTAAACCACAAAAAGACCCCACAAAGATAGAGA  496

seq1  ATTTCAGACCAATTTCCCTTATGAATATCAATGCAAAAA  537
      | ||||||||||| ||| | ||||||||  |||||||||
seq2  ACTTCAGACCAATATCCATAATGAATATTGATGCAAAAA  535


seq1: chr3_106524093_106525057
seq2: B6Ng01-338N16.g_70_1038

seq1  GAATTCTTAGAGCTGGTTTCTGGAAATTAAGAGTTTCAAAAAGTTTATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAGCTGGTTTCTGGAAATTAAGAGTTTCAAAAAGTTTATAC  50

seq1  AGGGGATTTAATGCACAGACACTCAAAGAATTGAATACATGACAGTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATTTAATGCACAGACACTCAAAGAATTGAATACATGACAGTAAGA  100

seq1  TACAGTTTTAACTGAGGTGTTAGTGTGGGAATGGAGAAAATGGTTAATCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTTAACTGAGGTGTTAGTGTGGGAATGGAGAAAATGGTTAATCG  150

seq1  ATTAATGTAGAGCAAAACTTCAAGAAACAGAAAAAAATAATCACTTCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTAGAGCAAAACTTCAAGAAACAGAAAAAAATAATCACTTCTAG  200

seq1  CCATGAGAAGGGAGATAAAGGTTTTCAACAATTTATGGCAACTACCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGAAGGGAGATAAAGGTTTTCAACAATTTATGGCAACTACCAAAT  250

seq1  GCCTATCTGTGTCTACTGAATAAAACTGCTAAGGAGGACATTATTACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATCTGTGTCTACTGAATAAAACTGCTAAGGAGGACATTATTACATT  300

seq1  GGCTTGCAAAAGCGCATGTACAAGTGCAGACAATTTAAGCCTGACACCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCAAAAGCGCATGTACAAGTGCAGACAATTTAAGCCTGACACCGG  350

seq1  AAGTATTTCATTTCATGTAGGCAGTGAAAGCACTTTCTCTTTTAGTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTCATTTCATGTAGGCAGTGAAAGCACTTTCTCTTTTAGTTCCT  400

seq1  CCTTTGATCCGGAAGAAGAGACCTCAACCTTCGCTGTCGATTGGACCACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGATCCGGAAGAAGAGACCTCAACCTTCGCTGTCGATTGGACCACG  450

seq1  TCATAAGGGCGGGGCCATGGCGATCCATTCGCCTTGGTAACCATATGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGGGCGGGGCCATGGCGATCCATTCGCCTTGGTAACCATATGTGA  500

seq1  CGTAGCTGTATGCCTAGGATCCCTGGCTCTAGGAGCTCGGTTTTAGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGCTGTATGCCTAGGATCCCTGGCTCTAGGAGCTCGGTTTTAGTGGG  550

seq1  CGCAGACTCCGATCAGGCCCTGTCGTGGGTGGTGCTATTGATGCCACGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGACTCCGATCAGGCCCTGTCGTGGGTGGTGCTATTGATGCCACGCC  600

seq1  CCCCACGTCCTCTCTGACTGGCTGTGATGCGTCACGTAGCCAGAAGAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACGTCCTCTCTGACTGGCTGTGATGCGTCACGTAGCCAGAAGAGAC  650

seq1  TCGCCGGAAAACTGTGAGCTTGCCTGAGGTAGGAGTCTTCCGGCTTCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCGGAAAACTGTGAGCTTGCCTGAGGTAGGAGTCTTCCGGCTTCTAC  700

seq1  AGCCACTTCCCACGGAAGCTGGGGGAGCCGCCCTCTCAACTATCTCCCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTTCCCACGGAAGCTGGGGGAGCCGCCCTCTCAACTATCTCCCGT  750

seq1  CACACCCTTCTGTTCGCTCGCCTCAGACGCTGCCCTTCCACACCCGTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCTTCTGTTCGCTCGCCTCAGACGCTGCCCTTCCACACCCGTGCT  800

seq1  CTGGTTCGCGCCTACTTGGGGACGCTGTCCCCCCAG-TATTCACTGCCCT  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTGGTTCGCGCCTACTTGGGGACGCTGTCCCCCCAGTTATTCACTGCCCT  850

seq1  ATCCCCTCCCACCCATCTAAAATGTCTAATAGTCTCCAGAGCGTCATTCT  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-CCCTCCCACCCATCTAAAATGTCTAATAGTCTCCAGAGCGTCATTCT  899

seq1  GAAAACCGCAGAGGAAAAGTCAGGCTCG--CGCTGGTAAGTACCAGTTCC  947
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  GAAAACCGCAGAGGAAAAGTCAGGCTCGGCGGCTGGTAAGTACCAGTTCC  949

seq1  C-AGTTCTTCAGGC-GCCCG  965
      | |||||||||||| |||||
seq2  CAAGTTCTTCAGGCGGCCCG  969


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