BAC Information

Click to search

BAC

Clone NameB6Ng01-338O10
Chromosome3 (Build37)
Map Location 118,980,045 - 118,980,865
singlet/doubletsinglet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338O10.bB6Ng01-338O10.g
ACCGA123053GA123054
length1,244821
definitionB6Ng01-338O10.b B6Ng01-338O10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacataaccatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaa
atcagggactagacaaggctgtccattctctccctacctattcaacattg
tacttgaagtcctagccagagcaattagacaacaaaaggagatcaagggg
atacaaattggaaaggaagaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaagcc
tgataaacagcttcaatgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaataccttggtg
tgactctaactaaggaagtgaaagatctgtatgagaagaacttcaagtgt
ctgaagaaagatattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaatatagtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaagggcaatcggcagattcatctggaataacaaaaacct
aagatagcaaaatctcttcccaaggataaaagaacctctggtgaaatcac
catgcctgacctaaagctgtactacagagcaattgtgataaaaattgcat
ggtactggtatagcaacagacacatagatcaatggaacagaattgaagac
ccagagatgaacccacacacctatggtcacttgatctttgacaagggagc
taaaaccatccagtggaaaaaagacagcattttcaacaaatggtgctggc
acaactggcggttatcatgtagaagaatgcgaattgatcctttcctatct
ccttgtactaacatcaaatctaagtggattaaggaactccacataaaacc
agagacactgaaacttatagaggagaaagtaggaaaagcctcgaagatat
ggggtacaagggaaaaattcctgaataagaaacagcaatggcttgtgctt
gtaggatcgagaattgaataaattggactcatagtgctaagctttctgca
agcaaaggacacaactcaattaggacacaaaggacctcatctca

gaattcactgtaataaattagaagtcagttaggttgactgacgaaggtat
gagtagctatctaggaacataaacccggaataggttttgaacattatttc
gaggacagagtacaataacaagtttctctataatagtaattttcactcca
gagttgtactaggaaaccagtctgtttgtactcactgtatttcttaacta
cattcttagattttatagcctgtattcattgaaatacaaccacaggtttt
tgtatatactagatacatggggctttgatatgtatctttaattgtatata
cttaacgtgcatgccattataacatccaattactgttggttatgcactaa
tatatccagcattttatgcattgctattgctattaattagtattgtttca
gctgtgaaagagaaactcaagtttgttctcatagtgcttttccagtatag
agcattataactataatcgtcacctgcattttagatagatcttcatccca
cataaacataacattgttctttagaaactatacctcccttcttgaaactg
aatcatcagtcatctcccatacttcccccctaccaggaacacccaggtag
gtgagctattttgtttagtctccacatatgatgaatatcaggaagctatt
ttgcacttagcttaagaaacttaacttaatgaccctcaggataatctgtt
ttgtaaaatgtggcatatatttttaaccgagtcttccaattcatgcatgc
tcacacaatactacaacacacatacagagagagagagagagagagagaga
gagagagagagagagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118980045_118980865
seq2: B6Ng01-338O10.g_67_887 (reverse)

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTAT  50

seq1  GTGTGTTGTAGTATTGTGTGAGCATGCATGAATTGGAAGACTCGGTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTGTAGTATTGTGTGAGCATGCATGAATTGGAAGACTCGGTTAAA  100

seq1  AATATATGCCACATTTTACAAAACAGATTATCCTGAGGGTCATTAAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGCCACATTTTACAAAACAGATTATCCTGAGGGTCATTAAGTTA  150

seq1  AGTTTCTTAAGCTAAGTGCAAAATAGCTTCCTGATATTCATCATATGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTAAGCTAAGTGCAAAATAGCTTCCTGATATTCATCATATGTGG  200

seq1  AGACTAAACAAAATAGCTCACCTACCTGGGTGTTCCTGGTAGGGGGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAACAAAATAGCTCACCTACCTGGGTGTTCCTGGTAGGGGGGAAG  250

seq1  TATGGGAGATGACTGATGATTCAGTTTCAAGAAGGGAGGTATAGTTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAGATGACTGATGATTCAGTTTCAAGAAGGGAGGTATAGTTTCTA  300

seq1  AAGAACAATGTTATGTTTATGTGGGATGAAGATCTATCTAAAATGCAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAATGTTATGTTTATGTGGGATGAAGATCTATCTAAAATGCAGGT  350

seq1  GACGATTATAGTTATAATGCTCTATACTGGAAAAGCACTATGAGAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGATTATAGTTATAATGCTCTATACTGGAAAAGCACTATGAGAACAAA  400

seq1  CTTGAGTTTCTCTTTCACAGCTGAAACAATACTAATTAATAGCAATAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTTCTCTTTCACAGCTGAAACAATACTAATTAATAGCAATAGCA  450

seq1  ATGCATAAAATGCTGGATATATTAGTGCATAACCAACAGTAATTGGATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAAAATGCTGGATATATTAGTGCATAACCAACAGTAATTGGATGT  500

seq1  TATAATGGCATGCACGTTAAGTATATACAATTAAAGATACATATCAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGGCATGCACGTTAAGTATATACAATTAAAGATACATATCAAAGC  550

seq1  CCCATGTATCTAGTATATACAAAAACCTGTGGTTGTATTTCAATGAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTATCTAGTATATACAAAAACCTGTGGTTGTATTTCAATGAATAC  600

seq1  AGGCTATAAAATCTAAGAATGTAGTTAAGAAATACAGTGAGTACAAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATAAAATCTAAGAATGTAGTTAAGAAATACAGTGAGTACAAACAG  650

seq1  ACTGGTTTCCTAGTACAACTCTGGAGTGAAAATTACTATTATAGAGAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTTCCTAGTACAACTCTGGAGTGAAAATTACTATTATAGAGAAAC  700

seq1  TTGTTATTGTACTCTGTCCTCGAAATAATGTTCAAAACCTATTCCGGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTGTACTCTGTCCTCGAAATAATGTTCAAAACCTATTCCGGGTT  750

seq1  TATGTTCCTAGATAGCTACTCATACCTTCGTCAGTCAACCTAACTGACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCCTAGATAGCTACTCATACCTTCGTCAGTCAACCTAACTGACTT  800

seq1  CTAATTTATTACAGTGAATTC  821
      |||||||||||||||||||||
seq2  CTAATTTATTACAGTGAATTC  821


| Home | SequenceCutter | Blast | Download |