BAC Information

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BAC

Clone NameB6Ng01-338P05
Chromosome3 (Build37)
Map Location 63,024,831 - 63,025,845
singlet/doubletsinglet
Overlap genenone
Upstream gene4631416L12Rik, Dhx36, Gpr149, LOC676984, LOC666967
Downstream geneMme, Plch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338P05.bB6Ng01-338P05.g
ACCGA123087GA123088
length7781,003
definitionB6Ng01-338P05.b B6Ng01-338P05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctagaaagcacttaatttcttttattatttctgtgttgacccatt
tcattcagtaaagagttgttcttgatatccagccttaatctgttgtagtt
tgatgggatggaaggagttatttcaattttcttgcatttgtagagactta
ctttgaatctgtctgtgtggtcaatattatagaaatttccatgagatgtg
gagaagaaggtatactcttttgtgtttgggtaaaatatcctgtaaatacc
tgttaatccaatttgttttataacttgtgtaagctccagcatttctatgt
taatttttctctgtataaccgatcatccataagtgagagtgcggtgctga
agtctcccactattactaatatgtgatttaagtttttgttttgttttcac
aaccttgaatgcccttgtgtttgggacatagattttaagaatgtaaatac
tatctttgtagatctgtccattgatgtgtgtgttgtgtcatccccagtgt
actttgattacttttggtttgagtctattttgatagatattaaaatggtt
aaatcacttgcttcttaggtacacttgcttaaaatgtctgtttttttata
ttaagttctgagttttgggtttagtaaaaggatgaatcctgttttaggat
cgattttgttagtctatatttttttattggataattgaaaccatttatat
tgagagataccaataaccaaagatggttgattcctgttattctgtttggt
gatagaggtggtggcgggtggtggtggt

gaattcctttaagtttccgctataaacagggtatgagaggacctgggtac
tcagaggataagaaatcatcctgatttatttgtttgattttctgtccttc
ttatggacttacatttttgtagcaccctaagaaaaacaaaataaataaat
ggaggtgtttaataagctctgtgaagcgaagactgatggtacaaggttta
gaatatatgcctcatgaaagactagtctttctttcgttagcttaaggtaa
gttctctttatgtattccaggctggctctcaaaattccaactttttttct
caccatctttactgctcgtatggcagatgtctactattaatcctggtgcc
gtggaaaacttctgtgctaaagagtaacaacttacataagaaactttttc
tctacttctttctttactgagagttaaatggtttacgggggaaactaaac
aaattctcaagtgcagacaagcaaacaaacaaggaacctagaggacgtag
aaacatggtttatgctgtaacattgcttgctgagtaagcctaaagacctg
agtttgatttctagtatttgctgaagaccagctctgataatgcgttcaaa
aatctaaggaggggatggagggttggtgaccatctaaagcagggacacag
tacacacaattggtagataaagcaagaatgaaataataaattccaaccac
tttacacacatagacacacacacacacaaacatcctcacacatatttgat
ggatggagtaaagctccaacagcttcacacagacagacagacagacagac
agacagacagaaagacagaccgataagatggggcatacacattcacacac
tgagtggatggagcaaagctccaaccattttacacatatacatatacata
tacatatacatatacatatacatatacatatacatatactttttggtgag
gaagcagaatccaactagcagctcatatatatatatatatatatatatgt
ata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_63024831_63025845
seq2: B6Ng01-338P05.g_67_1069 (reverse)

seq1  TATACATATATATACATATATATATATATATATATATATGAGCCTGCTAG  50
                |||||||||||||||||||||||||||||||| |||||||
seq2  ----------TATACATATATATATATATATATATATATGAG-CTGCTAG  39

seq1  TTGGATTCTGCTTCCTCCACCAAAAAGTATATGTATATGTATATGTATAT  100
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGGATTCTGCTTCCT-CACCAAAAAGTATATGTATATGTATATGTATAT  88

seq1  GTATATGTATATGTATATGTATATGTATATGTGTAAAATGGTTGGAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGTATATGTATATGTATATGTATATGTGTAAAATGGTTGGAGCTT  138

seq1  TGCTCCATCCACTCAGTGTGTGAATGTGTATGCCCCATCTTATCGGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCATCCACTCAGTGTGTGAATGTGTATGCCCCATCTTATCGGTCTG  188

seq1  TCTTTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTGTGAAGCTGTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTGTGAAGCTGTTGG  238

seq1  AGCTTTACTCCATCCATCAAATATGTGTGAGGATGTTTGTGTGTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTACTCCATCCATCAAATATGTGTGAGGATGTTTGTGTGTGTGTGT  288

seq1  GTCTATGTGTGTAAAGTGGTTGGAATTTATTATTTCATTCTTGCTTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGTGTGTAAAGTGGTTGGAATTTATTATTTCATTCTTGCTTTATC  338

seq1  TACCAATTGTGTGTACTGTGTCCCTGCTTTAGATGGTCACCAACCCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATTGTGTGTACTGTGTCCCTGCTTTAGATGGTCACCAACCCTCCA  388

seq1  TCCCCTCCTTAGATTTTTGAACGCATTATCAGAGCTGGTCTTCAGCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCTTAGATTTTTGAACGCATTATCAGAGCTGGTCTTCAGCAAAT  438

seq1  ACTAGAAATCAAACTCAGGTCTTTAGGCTTACTCAGCAAGCAATGTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAATCAAACTCAGGTCTTTAGGCTTACTCAGCAAGCAATGTTACA  488

seq1  GCATAAACCATGTTTCTACGTCCTCTAGGTTCCTTGTTTGTTTGCTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAACCATGTTTCTACGTCCTCTAGGTTCCTTGTTTGTTTGCTTGTC  538

seq1  TGCACTTGAGAATTTGTTTAGTTTCCCCCGTAAACCATTTAACTCTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTGAGAATTTGTTTAGTTTCCCCCGTAAACCATTTAACTCTCAGT  588

seq1  AAAGAAAGAAGTAGAGAAAAAGTTTCTTATGTAAGTTGTTACTCTTTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAGTAGAGAAAAAGTTTCTTATGTAAGTTGTTACTCTTTAGC  638

seq1  ACAGAAGTTTTCCACGGCACCAGGATTAATAGTAGACATCTGCCATACGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGTTTTCCACGGCACCAGGATTAATAGTAGACATCTGCCATACGA  688

seq1  GCAGTAAAGATGGTGAGAAAAAAAGTTGGAATTTTGAGAGCCAGCCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAAGATGGTGAGAAAAAAAGTTGGAATTTTGAGAGCCAGCCTGGA  738

seq1  ATACATAAAGAGAACTTACCTTAAGCTAACGAAAGAAAGACTAGTCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAAAGAGAACTTACCTTAAGCTAACGAAAGAAAGACTAGTCTTTC  788

seq1  ATGAGGCATATATTCTAAACCTTGTACCATCAGTCTTCGCTTCACAGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCATATATTCTAAACCTTGTACCATCAGTCTTCGCTTCACAGAGC  838

seq1  TTATTAAACACCTCCATTTATTTATTTTGTTTTTCTTAGGGTGCTACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAACACCTCCATTTATTTATTTTGTTTTTCTTAGGGTGCTACAAA  888

seq1  AATGTAAGTCCATAAGAAGGACAGAAAATCAAACAAATAAATCAGGATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAGTCCATAAGAAGGACAGAAAATCAAACAAATAAATCAGGATGA  938

seq1  TTTCTTATCCTCTGAGTACCCAGGTCCTCTCATACCCTGTTTATAGCGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATCCTCTGAGTACCCAGGTCCTCTCATACCCTGTTTATAGCGGA  988

seq1  AACTTAAAGGAATTC  1015
      |||||||||||||||
seq2  AACTTAAAGGAATTC  1003


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