BAC Information

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BAC

Clone NameB6Ng01-339B22
Chromosome3 (Build37)
Map Location 95,574,362 - 95,719,322
singlet/doubletdoublet
Overlap gene4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14
Upstream geneCgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2
Downstream geneAnp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339B22.bB6Ng01-339B22.g
ACCGA123202GA123203
length3351,080
definitionB6Ng01-339B22.b B6Ng01-339B22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,718,988 - 95,719,322)(95,574,362 - 95,575,445)
sequence
caggccagcctgatctacacagtgagttccgggccagggctatatgttga
aacctcatcttaaaaagaaaaaaaaaaggaactatatacggacaattgaa
ataccaactatttacagacaaattccaaccaagttttcaaaatattttgt
aacgttattaatgattagtaaacaatattttatagtaaaaaaattctttt
tacaatttaaatagctagggaggagaacctattccttgctgagacctcat
gttccataccattctagtgtcaagtccaagtaactactttttcttccttt
ttaatttacttattgtgggtgtgggtgtgggtggg
gaattcatagagatctacctgcctctaccttccaagtgctgggattgcag
catgccaccacacttggctaggaattccactttctaaaagcaaaagaaaa
atgacaaactctgctattccataaggaggtattttttgtgtttttatttc
ttatcctgtcagatctgatttcttcaagtgacaagaaggacaacttgcaa
tctgcagagcaaaaggaactctataaataccgtgttgcatctataggaga
aactaatatacgtgacttcaagattttctgtatctatatagaatgacaac
agaaagtgcaaagtcaaaagcatcaaaatctcttgagctgtacacaatca
aatattgtagattatcatcaatattttgtgccataaaaaagaaaaaatac
agtgcactcatgtaaataaaataaatctttaaaaaaagaaaaaggaaaac
gaaaaaacagtaacatcccactgcagcataggctagcctgtaactgggga
tctagtcttctaagaattgggattactggaaacatcaattcttaattgct
agttccaacagagaagggtttcagaaggtcactggatcttctatttagtt
ctgtaaaataaaactctctttgaatgactactgaagaagcaatagtaata
gactgtcccagaacagttcaggaacagaaagtaatagctatttatatgct
ctactcataaggacagggttccttaccttatcgctgctgatattctagca
tagatacattttttttgtggttggagactattctatgcattataagatat
tcaacgacatttctctgacattgacccattagtgcttaggagtttctgtc
ccagttgaaacaaacaaaagtatctctagttattactaagtgtcacctag
aagtccctggctttagcaacgatacagatctggtatttacaattaactgc
atcattatactgagatgtttaagaagttgtgtaggaatctggaaatagat
gaaagatcagtgattcatgaaaactgaggcagttgtatatacaagaccac
tgagaaagcaaaaaaataggaggtttaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95718988_95719322
seq2: B6Ng01-339B22.b_54_388 (reverse)

seq1  CCCACCCACACCCACACCCACAATAAGTAAATTAAAAAGGAAGAAAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCACACCCACACCCACAATAAGTAAATTAAAAAGGAAGAAAAAGT  50

seq1  AGTTACTTGGACTTGACACTAGAATGGTATGGAACATGAGGTCTCAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTGGACTTGACACTAGAATGGTATGGAACATGAGGTCTCAGCAA  100

seq1  GGAATAGGTTCTCCTCCCTAGCTATTTAAATTGTAAAAAGAATTTTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGGTTCTCCTCCCTAGCTATTTAAATTGTAAAAAGAATTTTTTTA  150

seq1  CTATAAAATATTGTTTACTAATCATTAATAACGTTACAAAATATTTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAATATTGTTTACTAATCATTAATAACGTTACAAAATATTTTGAA  200

seq1  AACTTGGTTGGAATTTGTCTGTAAATAGTTGGTATTTCAATTGTCCGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGTTGGAATTTGTCTGTAAATAGTTGGTATTTCAATTGTCCGTAT  250

seq1  ATAGTTCCTTTTTTTTTTCTTTTTAAGATGAGGTTTCAACATATAGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCCTTTTTTTTTTCTTTTTAAGATGAGGTTTCAACATATAGCCCT  300

seq1  GGCCCGGAACTCACTGTGTAGATCAGGCTGGCCTG  335
      |||||||||||||||||||||||||||||||||||
seq2  GGCCCGGAACTCACTGTGTAGATCAGGCTGGCCTG  335

seq1: chr3_95574362_95575445
seq2: B6Ng01-339B22.g_65_1144

seq1  GAATTCATAGAGATCTACCTGCCTCTACCTTCCAAGTGCTGGGATTGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGAGATCTACCTGCCTCTACCTTCCAAGTGCTGGGATTGCAG  50

seq1  CATGCCACCACACTTGGCTAGGAATTCCACTTTCTAAAAGCAAAAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCACCACACTTGGCTAGGAATTCCACTTTCTAAAAGCAAAAGAAAA  100

seq1  ATGACAAACTCTGCTATTCCATAAGGAGGTATTTTTTGTGTTTTTATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAACTCTGCTATTCCATAAGGAGGTATTTTTTGTGTTTTTATTTC  150

seq1  TTATCCTGTCAGATCTGATTTCTTCAAGTGACAAGAAGGACAACTTGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTGTCAGATCTGATTTCTTCAAGTGACAAGAAGGACAACTTGCAA  200

seq1  TCTGCAGAGCAAAAGGAACTCTATAAATACCGTGTTGCATCTATAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGAGCAAAAGGAACTCTATAAATACCGTGTTGCATCTATAGGAGA  250

seq1  AACTAATATACGTGACTTCAAGATTTTCTGTATCTATATAGAATGACAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATATACGTGACTTCAAGATTTTCTGTATCTATATAGAATGACAAC  300

seq1  AGAAAGTGCAAAGTCAAAAGCATCAAAATCTCTTGAGCTGTACACAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGCAAAGTCAAAAGCATCAAAATCTCTTGAGCTGTACACAATCA  350

seq1  AATATTGTAGATTATCATCAATATTTTGTGCCATAAAAAAGAAAAAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGTAGATTATCATCAATATTTTGTGCCATAAAAAAGAAAAAATAC  400

seq1  AGTGCACTCATGTAAATAAAATAAATCTTTAAAAAAAGAAAAAGGAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACTCATGTAAATAAAATAAATCTTTAAAAAAAGAAAAAGGAAAAC  450

seq1  GAAAAAACAGTAACATCCCACTGCAGCATAGGCTAGCCTGTAACTGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAACAGTAACATCCCACTGCAGCATAGGCTAGCCTGTAACTGGGGA  500

seq1  TCTAGTCTTCTAAGAATTGGGATTACTGGAAACATCAATTCTTAATTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCTTCTAAGAATTGGGATTACTGGAAACATCAATTCTTAATTGCT  550

seq1  AGTTCCAACAGAGAAGGGTTTCAGAAGGTCACTGGATCTTCTATTTAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAACAGAGAAGGGTTTCAGAAGGTCACTGGATCTTCTATTTAGTT  600

seq1  CTGTAAAATAAAACTCTCTTTGAATGACTACTGAAGAAGCAATAGTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAATAAAACTCTCTTTGAATGACTACTGAAGAAGCAATAGTAATA  650

seq1  GACTGTCCCAGAACAGTTCAGGAACAGAAAGTAATAGCTATTTATATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCCCAGAACAGTTCAGGAACAGAAAGTAATAGCTATTTATATGCT  700

seq1  CTACTCATAAGGACAGGGTTCCTTACCTTATCGCTGCTGATATTCTAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCATAAGGACAGGGTTCCTTACCTTATCGCTGCTGATATTCTAGCA  750

seq1  TAGATACA-TTTTTTTGTGGTTGGAGACTATTCTATGCATTATAAGATAT  799
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACATTTTTTTTGTGGTTGGAGACTATTCTATGCATTATAAGATAT  800

seq1  TCAACGACATTTCTCTGACATTGACCCATTAGTGCTTAGGAGTTTCTGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACGACATTTCTCTGACATTGACCCATTAGTGCTTAGGAGTTTCTGTC  850

seq1  CCAGTTGAAACAAACAAAAGTATCTCTAGTTATTACTAAGTGTCACCTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGAAACAAACAAAAGTATCTCTAGTTATTACTAAGTGTCACCTAG  900

seq1  AAGTCCCTGGCTTTAGCAACGATACAGATCTGGTATTTACAATTAACTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCTGGCTTTAGCAACGATACAGATCTGGTATTTACAATTAACTGC  950

seq1  ATCATTATACTGAGATGTTTAAGAAGGTTGTGTAGGAATCTGGAAAATAA  999
      ||||||||||||||||||||||||| ||||||||||||||||||||   |
seq2  ATCATTATACTGAGATGTTTAAGAA-GTTGTGTAGGAATCTGGAAA--TA  997

seq1  GAATTGAAAGATCAAGTGATTCATGAAAAACTGAGGCAGTTGTATATACA  1049
      ||  ||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  GA--TGAAAGATC-AGTGATTCATG-AAAACTGAGGCAGTTGTATATACA  1043

seq1  AGACAACTGAGAAAGC-AAAAAATA-GAAGTTTAAAT  1084
      |||| ||||||||||| |||||||| || ||||||||
seq2  AGACCACTGAGAAAGCAAAAAAATAGGAGGTTTAAAT  1080