BAC Information

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BAC

Clone NameB6Ng01-340F18
Chromosome3 (Build37)
Map Location 88,586,616 - 88,664,234
singlet/doubletdoublet
Overlap gene5830417I10Rik
Upstream geneNtrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11
Downstream geneMsto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340F18.bB6Ng01-340F18.g
ACCGA124090GA124091
length1,061445
definitionB6Ng01-340F18.b B6Ng01-340F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,586,616 - 88,587,685)(88,663,784 - 88,664,234)
sequence
gaattccatatgaagatcagactggcctccaacttccagtgttcccctga
atttggcctcccaagtgatgggatcagtcgttccatagactacctgccct
gacaacctgattgtttacattttcttttgatagtaaaaatgtaatggttc
cctgtatatttattcatttactctgtaaaaataaattagagtcaggaatg
tttgttttgcttttatttatttatttatttatttatttatttattttttg
aggcctagccttgctatgcagcccaaggtttaaactcactatcctgcctc
agcctccacagtgctagggttacagatgtctgccagtatgcctctgacat
ttatttttttctttttttttaaagatgtatttatttattacatgtaagta
caccgtagctgtcttcagacattccagaagagggtgtcagatctcattac
cgatggttgtgagccaccatgtggttgctgggatttgaactcaggacctt
cggaagagcaatcttaaccgctgagccatctctccagccccatttttttc
tttttacaaattaaaaaagaagattatgtatgtctttattctggattcct
attgctgtgaaaaggcaccatgaccaagtcagttcttaaagtatttaatt
gggggggttgcttacagttagttcacagttaaagggttagttcattatgg
tggggtgtgtggcagcctggtttgttagctgtatctgagaactatataca
ttctgatccacaggcagcaggcagagagccactgggcctggcatgggctt
ttatgaaacctcagagcccactccagtgacactctgcctccaagaattcc
acacccactcccacaaggcctaatccttggaaactttctcagccggttca
cccattagggactaagaatgcaaacagtgagtctgtggggttcattctca
ttcacagcactgtgttgcctttgcacctgctgcaggccttgtgcctgtag
agggcagagagatcagctggactggagtacagtgctagagctgcaatgtg
gtgctgggaat
actatacaggctaggctggcctctacatgcttttgcctttccagtactgg
gattaaaggcacgtgccaccaagcccagcaaggatttttaaaatctattt
actctgggggttgggtggaggggcctatgtgtgtctgtcacacatatgtg
tatataggttgaggagcaggaagactctagggaattaaatcagattgtca
ggctttgataccaaataactttcacttggtgaacctttctgctagccttc
aatttatttacttttattttataaatataggtattttagcctgagcaaaa
tacaccatttgtatacattatctacaaagaacaaaagaaggtgagtgatc
ccctgaattgggagttgtaggcagttatgagctaaatgtggctgagtcct
ttggaagagcagccagtgattctgtttgtttgggtggggggttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88586616_88587685
seq2: B6Ng01-340F18.b_47_1107

seq1  GAATTCCATATGAAGATCAGACTGGCCTCCAACTTCCAGTGTTCCCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATGAAGATCAGACTGGCCTCCAACTTCCAGTGTTCCCCTGA  50

seq1  ATTTGGCCTCCCAAGTGATGGGATCAGTCGTTCCATAGACTACCTGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCCTCCCAAGTGATGGGATCAGTCGTTCCATAGACTACCTGCCCT  100

seq1  GACAACCTGATTGTTTACATTTTCTTTTGATAGTAAAAATGTAATGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCTGATTGTTTACATTTTCTTTTGATAGTAAAAATGTAATGGTTC  150

seq1  CCTGTATATTTATTCATTTACTCTGTAAAAATAAATTAGAGTCAGGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATATTTATTCATTTACTCTGTAAAAATAAATTAGAGTCAGGAATG  200

seq1  TTTGTTTTGCTTTTATTTATTTATTTATTTATTTATTTATTTATTTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGCTTTTATTTATTTATTTATTTATTTATTTATTTATTTTTTG  250

seq1  AGGCCTAGCCTTGCTATGCAGCCCAAGGTTTAAACTCACTATCCTGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTAGCCTTGCTATGCAGCCCAAGGTTTAAACTCACTATCCTGCCTC  300

seq1  AGCCTCCACAGTGCTAGGGTTACAGATGTCTGCCAGTATGCCTCTGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCACAGTGCTAGGGTTACAGATGTCTGCCAGTATGCCTCTGACAT  350

seq1  TTATTTTTTTCTTTTTTTTTAAAGATGTATTTATTTATTACATGTAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTCTTTTTTTTTAAAGATGTATTTATTTATTACATGTAAGTA  400

seq1  CACCGTAGCTGTCTTCAGACATTCCAGAAGAGGGTGTCAGATCTCATTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTAGCTGTCTTCAGACATTCCAGAAGAGGGTGTCAGATCTCATTAC  450

seq1  CGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTT  500

seq1  CGGAAGAGCAATCTTAACCGCTGAGCCATCTCTCCAGCCCCATTTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGAGCAATCTTAACCGCTGAGCCATCTCTCCAGCCCCATTTTTTTC  550

seq1  TTTTTACAAATTAAAAAAGAAGATTATGTATGTCTTTATTCTGGATTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACAAATTAAAAAAGAAGATTATGTATGTCTTTATTCTGGATTCCT  600

seq1  ATTGCTGTGAAAAGGCACCATGACCAAGTCAGTTCTTAAAGTATTTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTGAAAAGGCACCATGACCAAGTCAGTTCTTAAAGTATTTAATT  650

seq1  GGGGGGGTTGCTTACAGTTAGTTCACAGTTAAAGGGTTAGTTCATTATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGTTGCTTACAGTTAGTTCACAGTTAAAGGGTTAGTTCATTATGG  700

seq1  TGGGGTGTGTGGCAGCCTGGTTTGTTAGCTGTATCTGAGAACTATATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGTGTGGCAGCCTGGTTTGTTAGCTGTATCTGAGAACTATATACA  750

seq1  TTCTGATCCACAGGCAGCAGGCAGAGAGCCACTGGGCCTGGCATGGGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATCCACAGGCAGCAGGCAGAGAGCCACTGGGCCTGGCATGGGCTT  800

seq1  TTATGAAACCTCAGAGCCCACTCCAGTGACACTCTGCCTCCAAGAATTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAACCTCAGAGCCCACTCCAGTGACACTCTGCCTCCAAGAATTCC  850

seq1  ACACCCACTCCCACAAGGCCTAATCCTTGGAAACTTTCTCAGCCGGTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCACTCCCACAAGGCCTAATCCTTGGAAACTTTCTCAGCCGGTTCA  900

seq1  CCCATTAGGGACTAAGAATGCAAACAAGTGAGTCTGTGGGGTTCATTCTC  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCCATTAGGGACTAAGAATGCAAAC-AGTGAGTCTGTGGGGTTCATTCTC  949

seq1  ATTCACAGCACTGTGTTTGCCTTTGCACCTGCTGCAGGCCTTGTGCCTGT  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTCACAGCACTGTG-TTGCCTTTGCACCTGCTGCAGGCCTTGTGCCTGT  998

seq1  AGAGGGCAGGAGAGATCAGCTGGAACTGGAGTTACAGGTGCTTAGGAGCT  1050
      |||||||| |||||||||||||| ||||||| |||| |||||   |||||
seq2  AGAGGGCA-GAGAGATCAGCTGG-ACTGGAG-TACA-GTGCT--AGAGCT  1042

seq1  GCAATGTGGGTGCTGGGAAT  1070
      ||||||| ||||||||||||
seq2  GCAATGT-GGTGCTGGGAAT  1061

seq1: chr3_88663784_88664234
seq2: B6Ng01-340F18.g_68_518 (reverse)

seq1  ATAACCCCCCACCCAAACAAACAGAATCACTGGCTGCTCTTCCAAAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCCCCACCCAAACAAACAGAATCACTGGCTGCTCTTCCAAAGGAC  50

seq1  TCAGCCACATTTAGCTCATAACTGCCTACAACTCCCAATTCAGGGGATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCACATTTAGCTCATAACTGCCTACAACTCCCAATTCAGGGGATCA  100

seq1  CTCACCTTCTTTTGTTCTTTGTAGATAATGTATACAAATGGTGTATTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTTCTTTTGTTCTTTGTAGATAATGTATACAAATGGTGTATTTTG  150

seq1  CTCAGGCTAAAATACCTATATTTATAAAATAAAAGTAAATAAATTGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTAAAATACCTATATTTATAAAATAAAAGTAAATAAATTGAAGG  200

seq1  CTAGCAGAAAGGTTCACCAAGTGAAAGTTATTTGGTATCAAAGCCTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGAAAGGTTCACCAAGTGAAAGTTATTTGGTATCAAAGCCTGACA  250

seq1  ATCTGATTTAATTCCCTAGAGTCTTCCTGCTCCTCAACCTATATACACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATTTAATTCCCTAGAGTCTTCCTGCTCCTCAACCTATATACACAT  300

seq1  ATGTGTGACAGACACACATAGGCCCCTCCACCCAACCCCCAGAGTAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGACAGACACACATAGGCCCCTCCACCCAACCCCCAGAGTAAATA  350

seq1  GATTTTAAAAATCCTTGCTGGGCTTGGTGGCACGTGCCTTTAATCCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAAAAATCCTTGCTGGGCTTGGTGGCACGTGCCTTTAATCCCAGT  400

seq1  ACTGGAAAGGCAAAAGCATGTAGAGGCCAGCCTAGCCTGTATAGTGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAAGGCAAAAGCATGTAGAGGCCAGCCTAGCCTGTATAGTGAATT  450

seq1  C  451
      |
seq2  C  451