BAC Information

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BAC

Clone NameB6Ng01-340I08
Chromosome3 (Build37)
Map Location 120,716,788 - 120,867,717
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340I08.bB6Ng01-340I08.g
ACCGA124202GA124203
length1,143188
definitionB6Ng01-340I08.b B6Ng01-340I08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,866,568 - 120,867,717)(120,716,788 - 120,716,975)
sequence
gaattctatgaaattattaattcatctaaacagcattaatttatgaaagt
tcatctttatgttgatctgcaggaaatctgctcagtacactaatgcccag
ggtttattatgttaatttaaaatgacaggagctgcaagactgagatggag
ttttaggaaaaagtcagtgatttgctacaaggatttataagactcagaga
atctgttaaactcataattgcatttcgttatatattagcaggggagagca
agtcagtcaagaggaaggtagaggggaacccatgcgcaagctaccggaca
tgggcctctggtggacttggacaagcatggcagatcatcgcagcggcagt
gtgtgactgtgagaagtgttgccagccaggaaagtgcacattttcacaca
ctgtagcagttaggagggaattagcttcattagagactgaagctttggag
agcagtgatattaggtgtttcgggacaatttaaaatgtttgcttttatca
ggcttcacctaggaatacacccctgcatggctgacgtcaacctcagagca
agaagattcactgcagtaccagggtgaagtgtaaatcattcggtttgtct
gggaccatgggttccaaaccctcacacatacaaaacacacttctatcagg
actcaggctcatctacgcaacccaggcctgttaagttctccccattcttc
atagcagcattgttgaggtcgtgggtcatgcttgagaatggtgcttcagg
gagaaatggcattagaagttacagtttaagcagttatgaggagaagttgc
agtttaagcagttatggggaggccggttaatgggaaaatgggaataggtg
actagagttatattttgtggaggttgacaagcagtagagagagagagagg
tctgaagcttgttgaggaattagcattgggttcttgtggtggtttataaa
caaacatttctaaacagagaaggcagggaggtggggagatgcacaggaag
ttatatggttagaataaccactaggggttggtagggtttgctgaagaagg
aagatacttctttctcagtgagaagcatctgaatgaagatagctaactga
attggttccattattgcaacttctcgggtaaggcagcttttct
actggaggagatataaagaaaccaccagataaggctttattctcattttg
tgccttcaacctgtaatccactctctaaccctcacctgagcaagaacaca
ctctcccatgagaagaattccagcttaccttctctgacaatgcagtttat
atatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_120866568_120867717
seq2: B6Ng01-340I08.b_42_1184 (reverse)

seq1  AGAAAAGCTGCCCCTGACCCG-GAAGTTGCAATTACTGGATCACATTTTC  49
      ||||||||||  ||| ||||| |||||||||| || ||||  ||   |||
seq2  AGAAAAGCTG--CCTTACCCGAGAAGTTGCAA-TAATGGA--ACCAATTC  45

seq1  GTTTTGCTCTC-TCCTTCTCATTCTTCTCACTGAGAAAGAAGTATCTTCC  98
        || ||| || || |||  || |||||||||||||||||||||||||||
seq2  AGTTAGCTATCTTCATTCAGATGCTTCTCACTGAGAAAGAAGTATCTTCC  95

seq1  TCCTACAGCAAACCCTACC-ACCCCTAGGTGGTTATTCTAACCATTATAA  147
      | || |||||||||||||| ||||||| |||||||||||||||| |||||
seq2  TTCTTCAGCAAACCCTACCAACCCCTA-GTGGTTATTCTAACCA-TATAA  143

seq1  CTTCCTGTGCATTCTCCCACCCTCCCTGCCTTCTCTTGTTTAGAAAATGT  197
      ||||||||||| ||||||  ||||||||||||||| ||||||| ||||||
seq2  CTTCCTGTGCA-TCTCCCCACCTCCCTGCCTTCTC-TGTTTAG-AAATGT  190

seq1  TTGTTTATAAACCACCACAAGAACCCAATGCTAATTCCTCAACAAGCTTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATAAACCACCACAAGAACCCAATGCTAATTCCTCAACAAGCTTC  240

seq1  AGACCTCTCTCTCTCTCTACTGCTTGTCAACCTCCACAAAATATAACTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCTCTCTCTCTCTACTGCTTGTCAACCTCCACAAAATATAACTCT  290

seq1  AGTCACCTATTCCCATTTTCCCATTAACCGGCCTCCCCATAACTGCTTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCTATTCCCATTTTCCCATTAACCGGCCTCCCCATAACTGCTTAA  340

seq1  ACTGCAACTTCTCCTCATAACTGCTTAAACTGTAACTTCTAATGCCATTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAACTTCTCCTCATAACTGCTTAAACTGTAACTTCTAATGCCATTT  390

seq1  CTCCCTGAAGCACCATTCTCAAGCATGACCCACGACCTCAACAATGCTGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGAAGCACCATTCTCAAGCATGACCCACGACCTCAACAATGCTGC  440

seq1  TATGAAGAATGGGGAGAACTTAACAGGCCTGGGTTGCGTAGATGAGCCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGAATGGGGAGAACTTAACAGGCCTGGGTTGCGTAGATGAGCCTG  490

seq1  AGTCCTGATAGAAGTGTGTTTTGTATGTGTGAGGGTTTGGAACCCATGGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGATAGAAGTGTGTTTTGTATGTGTGAGGGTTTGGAACCCATGGT  540

seq1  CCCAGACAAACCGAATGATTTACACTTCACCCTGGTACTGCAGTGAATCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACAAACCGAATGATTTACACTTCACCCTGGTACTGCAGTGAATCT  590

seq1  TCTTGCTCTGAGGTTGACGTCAGCCATGCAGGGGTGTATTCCTAGGTGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTCTGAGGTTGACGTCAGCCATGCAGGGGTGTATTCCTAGGTGAA  640

seq1  GCCTGATAAAAGCAAACATTTTAAATTGTCCCGAAACACCTAATATCACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATAAAAGCAAACATTTTAAATTGTCCCGAAACACCTAATATCACT  690

seq1  GCTCTCCAAAGCTTCAGTCTCTAATGAAGCTAATTCCCTCCTAACTGCTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCAAAGCTTCAGTCTCTAATGAAGCTAATTCCCTCCTAACTGCTA  740

seq1  CAGTGTGTGAAAATGTGCACTTTCCTGGCTGGCAACACTTCTCACAGTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGTGAAAATGTGCACTTTCCTGGCTGGCAACACTTCTCACAGTCA  790

seq1  CACACTGCCGCTGCGATGATCTGCCATGCTTGTCCAAGTCCACCAGAGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGCCGCTGCGATGATCTGCCATGCTTGTCCAAGTCCACCAGAGGC  840

seq1  CCATGTCCGGTAGCTTGCGCATGGGTTCCCCTCTACCTTCCTCTTGACTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCCGGTAGCTTGCGCATGGGTTCCCCTCTACCTTCCTCTTGACTG  890

seq1  ACTTGCTCTCCCCTGCTAATATATAACGAAATGCAATTATGAGTTTAACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTCTCCCCTGCTAATATATAACGAAATGCAATTATGAGTTTAACA  940

seq1  GATTCTCTGAGTCTTATAAATCCTTGTAGCAAATCACTGACTTTTTCCTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCTGAGTCTTATAAATCCTTGTAGCAAATCACTGACTTTTTCCTA  990

seq1  AAACTCCATCTCAGTCTTGCAGCTCCTGTCATTTTAAATTAACATAATAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCATCTCAGTCTTGCAGCTCCTGTCATTTTAAATTAACATAATAA  1040

seq1  ACCCTGGGCATTAGTGTACTGAGCAGATTTCCTGCAGATCAACATAAAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGGCATTAGTGTACTGAGCAGATTTCCTGCAGATCAACATAAAGA  1090

seq1  TGAACTTTCATAAATTAATGCTGTTTAGATGAATTAATAATTTCATAGAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTCATAAATTAATGCTGTTTAGATGAATTAATAATTTCATAGAA  1140

seq1  TTC  1150
      |||
seq2  TTC  1143

seq1: chr3_120716788_120716975
seq2: B6Ng01-340I08.g_73_260

seq1  ACTGGAGGAGATATAAAGAAACCACCAGATAAGGCTTTATTCTCATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGGAGATATAAAGAAACCACCAGATAAGGCTTTATTCTCATTTTG  50

seq1  TGCCTTCAACCTGTAATCCACTCTCTAACCCTCACCTGAGCAAGAACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCAACCTGTAATCCACTCTCTAACCCTCACCTGAGCAAGAACACA  100

seq1  CTCTCCCATGAGAAGAATTCCAGCTTACCTTCTCTGACAATGCAGTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCATGAGAAGAATTCCAGCTTACCTTCTCTGACAATGCAGTTTAT  150

seq1  ATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  188
      ||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  188