BAC Information

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BAC

Clone NameB6Ng01-340N09
Chromosome3 (Build37)
Map Location 151,768,349 - 151,876,984
singlet/doubletdoublet
Overlap geneGipc2, Dnajb4, Fubp1
Upstream geneEltd1, Ifi44, H28, Ptgfr, LOC100040741, LOC100040597, LOC676548
Downstream geneNexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5, LOC100040750, St6galnac3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340N09.bB6Ng01-340N09.g
ACCGA124407GA124408
length1,212613
definitionB6Ng01-340N09.b B6Ng01-340N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,768,349 - 151,769,571)(151,876,372 - 151,876,984)
sequence
gaattcttctaaaatacacaactgacagtgttgctgcccccacagttacc
acagagccttccacgccctcactcatctcttcctccagcctcctcgccac
ccagccgcactcgctgcagcagctccctaggctctcaggctgcgtgcacc
ccctagtggcactcgctgcaccgcttccccagtctcccaagccgcgtgca
ccttccccaagccagtggctgtttcataatgcacctcccacttgtgccga
ctctgccgcttctagagggaactgctggctgctttcttgtcttcccttgt
ccctgacagcctcttcatcgtgacactgtgtgtcccgaactgttcatcag
ttcctaatggcttctgtctttctttaagagaggaaaagggccgttattca
tccttgaatcactagtgcccagactgccaggctcagcaaaggcaacgaat
aaataaacgaggcctgggagtgcagcatcatggtcagcttcccgcatttg
tgccaggtcagaagggagattgtttcaaatcctgttagttctttaaatcc
ttcagaaacttgattgcaggctatttataccaatttaatattagcgttga
actagcttcttttcattatgagctaattttaattgacctatttaattaaa
cagactatgcacatctgtggatttttaatgtttatatttgaatagctttt
tctcagcttcccagatagatcacaggctaccctcctttcactgaaaccta
caagaaccctgtagagcagggtgcttagcagatacccattaattgcgtta
actactgagagatgatgttcatcccacgggacatgaagatgcccagcaca
gcctgcctcttctgctcactatggcaaagctgttcactcttccccacagc
ttccagcagagagccagagagcattctcccagcgtgcgctgcaagctccc
acccactgactacacatttctcctgcaccaatccttgccttccactgaag
gctgctcggagattcgaggacagtggcagtctccagcagtataccagcag
cggattgagcaaaggaaagtaagatgccctgccctgctgttccacgcaga
ctcaatcgctcacttcaagggcgtgaactctactgcgctggtccactgca
ctcgccccttgtgctagctaattctgtcaactcggggactgttaactgtc
aactgtgagaaa
gaattcaatgatgtaccagcatcacccccaatttttgctgcaatcttaaa
agaaaaatcggaatactaatcagggtattaatactttatgtactactcag
cactaaatttcctacaataaaagatatacttttaaaaacactagaaagat
tcacttattaagaataattaaaactaccactaatacttcagggagctaac
aaatagttaatgatctattaaacttatgttatatccccatttaaaacaac
ccacacatttggaaacaaaatcttttccaccctttgatttcaaatcatag
catttgtaaactatatcttaggtatttaagtgcactgtatgggactgaca
ggaactgatgttaaaagggaagtgttacgtacaattgaacgagaggaaaa
cggcttagactatggctatgttctacaattagcttttatgaacacttctg
agtttacttgaagaccaaggaatatccataagaaagcatgcttattcaca
ctccattcatgtaataggtctacaagcatccaaaagaaaaattggtacac
agttcattcaaaagaccaagcaaaactttcaactctcccctcattggggg
tgggtggtgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_151768349_151769571
seq2: B6Ng01-340N09.b_47_1258

seq1  GAATTCTTCTAAAATACACAACTGACAGTGTTGCTGCCCCCACAGTTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAAAATACACAACTGACAGTGTTGCTGCCCCCACAGTTACC  50

seq1  ACAGAGCCTTCCACGCCCTCACTCATCTCTTCCTCCAGCCTCCTCGCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCTTCCACGCCCTCACTCATCTCTTCCTCCAGCCTCCTCGCCAC  100

seq1  CCAGCCGCACTCGCTGCAGCAGCTCCCTAGGCTCTCAGGCTGCGTGCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCGCACTCGCTGCAGCAGCTCCCTAGGCTCTCAGGCTGCGTGCACC  150

seq1  CCCTAGTGGCACTCGCTGCACCGCTTCCCCAGTCTCCCAAGCCGCGTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTGGCACTCGCTGCACCGCTTCCCCAGTCTCCCAAGCCGCGTGCA  200

seq1  CCTTCCCCAAGCCAGTGGCTGTTTCATAATGCACCTCCCACTTGTGCCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCAAGCCAGTGGCTGTTTCATAATGCACCTCCCACTTGTGCCGA  250

seq1  CTCTGCCGCTTCTAGAGGGAACTGCTGGCTGCTTTCTTGTCTTCCCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCGCTTCTAGAGGGAACTGCTGGCTGCTTTCTTGTCTTCCCTTGT  300

seq1  CCCTGACAGCCTCTTCATCGTGACACTGTGTGTCCCGAACTGTTCATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACAGCCTCTTCATCGTGACACTGTGTGTCCCGAACTGTTCATCAG  350

seq1  TTCCTAATGGCTTCTGTCTTTCTTTAAGAGAGGAAAAGGGCCGTTATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAATGGCTTCTGTCTTTCTTTAAGAGAGGAAAAGGGCCGTTATTCA  400

seq1  TCCTTGAATCACTAGTGCCCAGACTGCCAGGCTCAGCAAAGGCAACGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAATCACTAGTGCCCAGACTGCCAGGCTCAGCAAAGGCAACGAAT  450

seq1  AAATAAACGAGGCCTGGGAGTGCAGCATCATGGTCAGCTTCCCGCATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACGAGGCCTGGGAGTGCAGCATCATGGTCAGCTTCCCGCATTTG  500

seq1  TGCCAGGTCAGAAGGGAGATTGTTTCAAATCCTGTTAGTTCTTTAAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGTCAGAAGGGAGATTGTTTCAAATCCTGTTAGTTCTTTAAATCC  550

seq1  TTCAGAAACTTGATTGCAGGCTATTTATACCAATTTAATATTAGCGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAACTTGATTGCAGGCTATTTATACCAATTTAATATTAGCGTTGA  600

seq1  ACTAGCTTCTTTTCATTATGAGCTAATTTTAATTGACCTATTTAATTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTTCTTTTCATTATGAGCTAATTTTAATTGACCTATTTAATTAAA  650

seq1  CAGACTATGCACATCTGTGGATTTTTAATGTTTATATTTGAATAGCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTATGCACATCTGTGGATTTTTAATGTTTATATTTGAATAGCTTTT  700

seq1  TCTCAGCTTCCCAGATAGATCACAGGCTACCCTCCTTTCACTGAAACCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTTCCCAGATAGATCACAGGCTACCCTCCTTTCACTGAAACCTA  750

seq1  CAAGAACCCTGTAGAGCAGGGTGCTTAGCAGATACCCATTAATTGCGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACCCTGTAGAGCAGGGTGCTTAGCAGATACCCATTAATTGCGTTA  800

seq1  ACTACTGAGAGATGATGTTCATCCCACGGGACATGAAGATGCCCAGCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGAGAGATGATGTTCATCCCACGGGACATGAAGATGCCCAGCACA  850

seq1  GCCTGCCTCTTCTGCTCACTATGGCAAAGCTGTTCACTCTTCCCCACAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTCTTCTGCTCACTATGGCAAAGCTGTTCACTCTTCCCCACAGC  900

seq1  TTCCAGCAGAGAGCCAAGAGAGCATTCTCCCAGCGTGCGCTGCAAGCTCC  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCCAGCAGAGAGCC-AGAGAGCATTCTCCCAGCGTGCGCTGCAAGCTCC  949

seq1  CACCCACTGACTACACATTCCTCCTGCACCAATCCTTGCCTTCCACTGAG  1000
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  CACCCACTGACTACACATTTCTCCTGCACCAATCCTTGCCTTCCACTGAA  999

seq1  GCTTGCTCGGAGATTCGAGGAACAGTGGCAGTCTCCAGCAGTATACCAGG  1050
      |  ||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  GGCTGCTCGGAGATTCGAGG-ACAGTGGCAGTCTCCAGCAGTATACCA-G  1047

seq1  CAGCGGAATGAGCAAAGGAAAAGGTAAAGATGCCCCTGCCCTGCTGTTCC  1100
      ||||||| |||||||||||||  || |||||| |||||||||||||||||
seq2  CAGCGGATTGAGCAAAGGAAA--GT-AAGATG-CCCTGCCCTGCTGTTCC  1093

seq1  ACGCAGAACTCATCGGCTCACTTTCAAAGGCGTTGACTCTACTGCGGCTG  1150
      |||||| |||||   |||||| ||||| |||||  |||||||||| ||||
seq2  ACGCAG-ACTCAATCGCTCAC-TTCAAGGGCGTGAACTCTACTGC-GCTG  1140

seq1  GTGTCGCAGCTGCACTCGCCTC-TGTGCTAGCTAATTCTGTCAACTCGGT  1199
      ||    |  ||||||||||| | |||||||||||||||||||||||||| 
seq2  GT----CCACTGCACTCGCCCCTTGTGCTAGCTAATTCTGTCAACTCGGG  1186

seq1  GACATGTAACTGT-AACTGT-AGAAA  1223
      |||   ||||||| |||||| |||||
seq2  GACTGTTAACTGTCAACTGTGAGAAA  1212

seq1: chr3_151876372_151876984
seq2: B6Ng01-340N09.g_67_679 (reverse)

seq1  CACCCACCACCCACCCCCAATGAGGGGAGAGTTGAAAGTTTTGCTTGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCACCCACCCCCAATGAGGGGAGAGTTGAAAGTTTTGCTTGGTC  50

seq1  TTTTGAATGAACTGTGTACCAATTTTTCTTTTGGATGCTTGTAGACCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATGAACTGTGTACCAATTTTTCTTTTGGATGCTTGTAGACCTAT  100

seq1  TACATGAATGGAGTGTGAATAAGCATGCTTTCTTATGGATATTCCTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAATGGAGTGTGAATAAGCATGCTTTCTTATGGATATTCCTTGGT  150

seq1  CTTCAAGTAAACTCAGAAGTGTTCATAAAAGCTAATTGTAGAACATAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTAAACTCAGAAGTGTTCATAAAAGCTAATTGTAGAACATAGCC  200

seq1  ATAGTCTAAGCCGTTTTCCTCTCGTTCAATTGTACGTAACACTTCCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTAAGCCGTTTTCCTCTCGTTCAATTGTACGTAACACTTCCCTTT  250

seq1  TAACATCAGTTCCTGTCAGTCCCATACAGTGCACTTAAATACCTAAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCAGTTCCTGTCAGTCCCATACAGTGCACTTAAATACCTAAGATA  300

seq1  TAGTTTACAAATGCTATGATTTGAAATCAAAGGGTGGAAAAGATTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTACAAATGCTATGATTTGAAATCAAAGGGTGGAAAAGATTTTGTT  350

seq1  TCCAAATGTGTGGGTTGTTTTAAATGGGGATATAACATAAGTTTAATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGTGTGGGTTGTTTTAAATGGGGATATAACATAAGTTTAATAGA  400

seq1  TCATTAACTATTTGTTAGCTCCCTGAAGTATTAGTGGTAGTTTTAATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAACTATTTGTTAGCTCCCTGAAGTATTAGTGGTAGTTTTAATTAT  450

seq1  TCTTAATAAGTGAATCTTTCTAGTGTTTTTAAAAGTATATCTTTTATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATAAGTGAATCTTTCTAGTGTTTTTAAAAGTATATCTTTTATTGT  500

seq1  AGGAAATTTAGTGCTGAGTAGTACATAAAGTATTAATACCCTGATTAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATTTAGTGCTGAGTAGTACATAAAGTATTAATACCCTGATTAGTA  550

seq1  TTCCGATTTTTCTTTTAAGATTGCAGCAAAAATTGGGGGTGATGCTGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGATTTTTCTTTTAAGATTGCAGCAAAAATTGGGGGTGATGCTGGTA  600

seq1  CATCATTGAATTC  613
      |||||||||||||
seq2  CATCATTGAATTC  613