BAC Information

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BAC

Clone NameB6Ng01-340P19
Chromosome3 (Build37)
Map Location 4,649,781 - 4,757,183
singlet/doubletdoublet
Overlap genenone
Upstream geneHnf4g, EG383815, LOC100039157, LOC100039167, LOC667709
Downstream geneLOC620283, Zfhx4, Pxmp3, EG620382, EG667759
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340P19.bB6Ng01-340P19.g
ACCGA124514GA124515
length1,1861,071
definitionB6Ng01-340P19.b B6Ng01-340P19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,755,968 - 4,757,183)(4,649,781 - 4,650,854)
sequence
gaattcaatatagttagaaactatctcactagctttagataaaccataga
gtctcaaacaaattttcatttttatatttaaatggtgagtcacagccata
atactgacaacataacaaagcacaaattatgcatactgcattcacttttc
atgaattccctaagtggtaaccaatgtgtcaggagtttcgggaagcaatc
tgatttttggttttctcaatatattttcttcattattgtttgttcttata
aatttagatttttaagagacccagggaagcacagaagaaagaaaatccac
ttcaaattattcctttaacatatatgattataggttttaagcatttattg
gcttaaatccaagagcagccatatctatataaagtttttcctgaaaaaat
gttttggtatcataaaatctagagatagactgatactcatacaaagtaat
cagaaacatttccttgagattaacaaattaaggaatggctgcaaaacaac
tgttcctttagatttgaatatgcatatagttatttccagagattcaccat
aggtaatacttttgttaaagttcctaggaattaaatattgtggaataaat
ttggcaaacatcatactctaaaatatttaacattgtggaaatttctccat
agttaagaatatgtcaggaatttgttcccagaaaaagccaaattctctaa
aggaatgctgtaaagaacaaagaaagtcaaagtggaggcggggggagaag
gcacaaaaatatgaaattattaattatttccattgatataatttgccggc
cttcattaaaataataacttgaagcaagaagaaagtgtgctatttttttt
ttccaggagcccagaaaatcagcaaactgatttctgctcctgagagtgcc
agagtgtcaccttgtggaacatgatgtgaattgaaggcacctgaccctgt
gttactattttcctgttggcacagtttgcatacaacaccagggagattaa
acataaatgggccataaaatgaaatatatattactatgatctagctttcc
atgtataaatcatttcctgactcttttgggtattgaatccacctaaatct
aaatatattaatgctaaacattcactgaatttagttcaacccatagtagg
taagcctgtcacttgtcaccctcataggctctctca

gaattcttctcaacagtctgtgttgcgggaacacttcattgaccgctcct
tccccgtgatgcagttctgaatcctccctgtagcagggggtcttcgctcg
tgcctgaagatgtttcttttcctgggttttaggcaccacttgtgagcgcc
cgactggccagcaaagcagacgctataacaggatccttctgaacacgttt
attgggagagcttgattgcagaggcgaaaagacctcgagcccagaactgg
tgctgcttatataggcctaggagaggcatgtctcacatccacattggtta
tgcattctacctcatttgcatgtctcacatctgattggttatactctctc
agtacctcacagaacctcattatcatgcccaggccaggcagtgacttggc
aaaaatactttactgcatatgtacacattggttgtttacccaaacttatg
cgtggtggccagtggtagccagcgccaccttgtaatggcatatgtggctt
cccacaattcacaataaacacacaaagacagacagacagatacacacaca
caaaacctttagaagtgatacatataaaatacagtatattcagtctttag
gatacaaaattaaattacaaggtcaaatgcacttgttcttcttaagtata
agaaatcagaaaaatgaaattaagaaaacaattaaattttaatagctctg
tttgtatattaaattaaccaaaatgtaataggcacatacaatgaaaacta
taaaacattgctaaaaaaatgtgaaaagatttgaataattaaaattagaa
tatacttctgaaattataaacacctaggagaaaacatggaggaaaacttc
atgggttttaaacttggtaataaattcttgggatatgatattaaaaccat
tgtaagcaaaagaacagaattgacgtttctgagtacacaacacataataa
acatagcgtatcttagagaatctaaaagcacagtaatttatcaaataaat
actagtagattcagaaatcaaatactgattgaacagtgtactactagata
gttgaatatgtcatgtggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_4755968_4757183
seq2: B6Ng01-340P19.b_45_1230 (reverse)

seq1  TGAGAGAG-CTATGA-GTTGAACCAAGTTGACA-GCTAAAACTAACTAAT  47
      |||||||| |||||| | |||  |||| ||||| |||     || ||| |
seq2  TGAGAGAGCCTATGAGGGTGA--CAAG-TGACAGGCT-----TACCTACT  42

seq1  AGAGTATAGAAAAATTAAAATCAAGTGAATGTATAAACAATATAAATATA  97
      |  |    |   || |||| || ||||||||| |    |  || ||||||
seq2  ATGG----GTTGAACTAAATTC-AGTGAATGTTT----AGCATTAATATA  83

seq1  TTTAGAATTTAGGTGGATACAATTTAACCAAAAAGAAGTTCAGGAAAATT  147
      ||||| |||||||||||| ||||   ||| ||||||   ||||||||  |
seq2  TTTAG-ATTTAGGTGGATTCAAT---ACCCAAAAGA--GTCAGGAAA--T  125

seq1  GGAATTTTATAACATTGGAAGCTAAGATCATAGTTAATTATTATAT-TTT  196
      |    ||||| |||| | ||||| |||||||||     || ||||| |||
seq2  G---ATTTAT-ACATGGAAAGCT-AGATCATAG-----TAATATATATTT  165

seq1  CATTTTATGG-CCATTTATGTTTAATCTCCCTGGTGTTTGTATGCAAACT  245
      |||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  CATTTTATGGCCCATTTATGTTTAATCTCCCTGGTG-TTGTATGCAAACT  214

seq1  GTGCCAACAGGAAAATAGTAACACAGGGTCAGGTGCCTTCAATTCACATC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAACAGGAAAATAGTAACACAGGGTCAGGTGCCTTCAATTCACATC  264

seq1  ATGTTCCACAAGGTGACACTCTGGCACTCTCAGGAGCAGAAATCAGTTTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCACAAGGTGACACTCTGGCACTCTCAGGAGCAGAAATCAGTTTG  314

seq1  CTGATTTTCTGGGCTCCTGG-AAAAAAAAATAGCACACTTTCTTCTTGCT  394
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGATTTTCTGGGCTCCTGGAAAAAAAAAATAGCACACTTTCTTCTTGCT  364

seq1  TCAAGTTATTATTTTAATGAAGGCCGGCAAATTATATCAATGGAAATAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTATTATTTTAATGAAGGCCGGCAAATTATATCAATGGAAATAAT  414

seq1  TAATAATTTCATATTTTTGTGCCTTCTCCCCCCGCCTCCACTTTGACTTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTTCATATTTTTGTGCCTTCTCCCCCCGCCTCCACTTTGACTTT  464

seq1  CTTTGTTCTTTACAGCATTCCTTTAGAGAATTTGGCTTTTTCTGGGAACA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCTTTACAGCATTCCTTTAGAGAATTTGGCTTTTTCTGGGAACA  514

seq1  AATTCCTGACATATTCTTAACTATGGAGAAATTTCCACAATGTTAAATAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGACATATTCTTAACTATGGAGAAATTTCCACAATGTTAAATAT  564

seq1  TTTAGAGTATGATGTTTGCCAAATTTATTCCACAATATTTAATTCCTAGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGTATGATGTTTGCCAAATTTATTCCACAATATTTAATTCCTAGG  614

seq1  AACTTTAACAAAAGTATTACCTATGGTGAATCTCTGGAAATAACTATATG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAACAAAAGTATTACCTATGGTGAATCTCTGGAAATAACTATATG  664

seq1  CATATTCAAATCTAAAGGAACAGTTGTTTTGCAGCCATTCCTTAATTTGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCAAATCTAAAGGAACAGTTGTTTTGCAGCCATTCCTTAATTTGT  714

seq1  TAATCTCAAGGAAATGTTTCTGATTACTTTGTATGAGTATCAGTCTATCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCAAGGAAATGTTTCTGATTACTTTGTATGAGTATCAGTCTATCT  764

seq1  CTAGATTTTATGATACCAAAACATTTTTTCAGGAAAAACTTTATATAGAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTTTATGATACCAAAACATTTTTTCAGGAAAAACTTTATATAGAT  814

seq1  ATGGCTGCTCTTGGATTTAAGCCAATAAATGCTTAAAACCTATAATCATA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGCTCTTGGATTTAAGCCAATAAATGCTTAAAACCTATAATCATA  864

seq1  TATGTTAAAGGAATAATTTGAAGTGGATTTTCTTTCTTCTGTGCTTCCCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAAAGGAATAATTTGAAGTGGATTTTCTTTCTTCTGTGCTTCCCT  914

seq1  GGGTCTCTTAAAAATCTAAATTTATAAGAACAAACAATAATGAAGAAAAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTTAAAAATCTAAATTTATAAGAACAAACAATAATGAAGAAAAT  964

seq1  ATATTGAGAAAACCAAAAATCAGATTGCTTCCCGAAACTCCTGACACATT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAGAAAACCAAAAATCAGATTGCTTCCCGAAACTCCTGACACATT  1014

seq1  GGTTACCACTTAGGGAATTCATGAAAAGTGAATGCAGTATGCATAATTTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCACTTAGGGAATTCATGAAAAGTGAATGCAGTATGCATAATTTG  1064

seq1  TGCTTTGTTATGTTGTCAGTATTATGGCTGTGACTCACCATTTAAATATA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTTATGTTGTCAGTATTATGGCTGTGACTCACCATTTAAATATA  1114

seq1  AAAATGAAAATTTGTTTGAGACTCTATGGTTTATCTAAAGCTAGTGAGAT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAATTTGTTTGAGACTCTATGGTTTATCTAAAGCTAGTGAGAT  1164

seq1  AGTTTCTAACTATATTGAATTC  1216
      ||||||||||||||||||||||
seq2  AGTTTCTAACTATATTGAATTC  1186


seq1: chr3_4649781_4650854
seq2: B6Ng01-340P19.g_75_1136

seq1  TCAACAGTCTGTGTTGCGGGAACACTTCATTGACCGCTCCTTCCCCGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGTCTGTGTTGCGGGAACACTTCATTGACCGCTCCTTCCCCGTGA  50

seq1  TGCAGTTCTGAATCCTCCCTGTAGCAGGGGGTCTTCGCTCGTGCCTGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTCTGAATCCTCCCTGTAGCAGGGGGTCTTCGCTCGTGCCTGAAG  100

seq1  ATGTTTCTTTTCCTGGGTTTTAGGCACCACTTGTGAGCGCCCGACTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTTTTCCTGGGTTTTAGGCACCACTTGTGAGCGCCCGACTGGCC  150

seq1  AGCAAAGCAGACGCTATAACAGGATCCTTCTGAACACGTTTATTGGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCAGACGCTATAACAGGATCCTTCTGAACACGTTTATTGGGAGA  200

seq1  GCTTGATTGCAGAGGCGAAAAGACCTCGAGCCCAGAACTGGTGCTGCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATTGCAGAGGCGAAAAGACCTCGAGCCCAGAACTGGTGCTGCTTA  250

seq1  TATAGGCCTAGGAGAGGCATGTCTCACATCCACATTGGTTATGCATTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCCTAGGAGAGGCATGTCTCACATCCACATTGGTTATGCATTCTA  300

seq1  CCTCATTTGCATGTCTCACATCTGATTGGTTATACTCTCTCAGTACCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTGCATGTCTCACATCTGATTGGTTATACTCTCTCAGTACCTCA  350

seq1  CAGAACCTCATTATCATGCCCAGGCCAGGCAGTGACTTGGCAAAAATACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCTCATTATCATGCCCAGGCCAGGCAGTGACTTGGCAAAAATACT  400

seq1  TTACTGCATATGTACACATTGGTTGTTTACCCAAACTTATGCGTGGTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCATATGTACACATTGGTTGTTTACCCAAACTTATGCGTGGTGGC  450

seq1  CAGTGGTAGCCAGCGCCACCTTGTAATGGCATATGTGGCTTCCCACAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTAGCCAGCGCCACCTTGTAATGGCATATGTGGCTTCCCACAATT  500

seq1  CACAATAAACACACAAAGACAGACAGACAGATACACACACACAAAACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAAACACACAAAGACAGACAGACAGATACACACACACAAAACCTT  550

seq1  TAGAAGTGATACATATAAAATACAGTATATTCAGTCTTTAGGATACAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTGATACATATAAAATACAGTATATTCAGTCTTTAGGATACAAAA  600

seq1  TTAAATTACAAGGTCAAATGCACTTGTTCTTCTTAAGTATAAGAAATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTACAAGGTCAAATGCACTTGTTCTTCTTAAGTATAAGAAATCAG  650

seq1  AAAAATGAAATTAAGAAAACAATTAAATTTTAATAGCTCTGTTTGTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAAATTAAGAAAACAATTAAATTTTAATAGCTCTGTTTGTATAT  700

seq1  TAAATTAACCAAAATGTAATAGGCACATACAATGAAAACTATAAAACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAACCAAAATGTAATAGGCACATACAATGAAAACTATAAAACATT  750

seq1  GCTAAAAAAATGTGAAAAGATTTGAATAATTAAAATTAGAATATACTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAAAATGTGAAAAGATTTGAATAATTAAAATTAGAATATACTTCT  800

seq1  GAAATTATAAACACCTAGGAGAAAACATGGAGGAAAACTTCAT-GGTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAAATTATAAACACCTAGGAGAAAACATGGAGGAAAACTTCATGGGTTTT  850

seq1  AAACTTGGTAATAAATTCTT-GGATATGATATTAAAACCATTGTAAGCAA  898
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAACTTGGTAATAAATTCTTGGGATATGATATTAAAACCATTGTAAGCAA  900

seq1  AAGAACAGAATTGACGTTTCTGAGTACACAACACATAATAAACATAGCGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGAATTGACGTTTCTGAGTACACAACACATAATAAACATAGCGT  950

seq1  ATCTTAGAGAAATCTAAAAGCCACAGTAATTTATCAAATAAATAATTAGT  998
      ||||||||| |||||||||| |||||||||||||||||||||| | ||||
seq2  ATCTTAGAG-AATCTAAAAG-CACAGTAATTTATCAAATAAAT-ACTAGT  997

seq1  AGATTCCAAGGAAATTCAAATAACTTGATTTGAACAGTGTTAACTACTAG  1048
      ||||||  ||  || |||||||   ||| |||||||||||  ||||||||
seq2  AGATTC--AG--AAATCAAATA--CTGA-TTGAACAGTGT--ACTACTAG  1038

seq1  ATAGTTTGAATATGGTCATGTGGTGA  1074
      |||| |||||||| ||||||||||||
seq2  ATAG-TTGAATAT-GTCATGTGGTGA  1062


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