BAC Information

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BAC

Clone NameB6Ng01-341A08
Chromosome3 (Build37)
Map Location 106,891,812 - 107,023,807
singlet/doubletdoublet
Overlap geneKcna2, Kcna10, Gm131
Upstream geneLOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432
Downstream geneA630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341A08.bB6Ng01-341A08.g
ACCGA124538GA124539
length1,0731,137
definitionB6Ng01-341A08.b B6Ng01-341A08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,891,812 - 106,892,886)(107,022,664 - 107,023,807)
sequence
gaattctcacacattagtgaggcatatacagcctttcacactggccagaa
gctatgttggctgttttagatgttcacatggctagcagtacatggccaca
ctcttcattgcataacaaaaaaaacagtttggcaggcaaaaagatttgtc
acatagaataccctgggtactcggtaggaggctattttaaaatgagcttc
gagactgagaatgaaaaggcatgagctgtatgtgggactgaggatctcca
agactgactctttccacttggttcagtaccttgagttaaccctgctcatt
tgccaccccaatcattccaagacctgcagctcagatccacatctcacaat
tgatgctctgccccaatgtcccatcccatcctcacctcttaccatccttt
ctgtccaatgaaggactttccatggctggctgcccctgagaaagggtgaa
aaagtcaggcctcagtgggacaaagtacaggtagagactgggggaggggg
cgttcatgcaggggaggggcaggaggtaatgaggtctgagctttttgcat
ctgtaataattagacaaactcaggacctctgagctgatccttaatacatt
gctcagtgctgagagcctgcaaggctggtctgcatgcacagggaccacag
ggaagggaaagatgaggagggtctaggagagacatggatgtgtgaggtca
ggagcagaggagccagacgtgtcaagtttgcttggaggctaaggctgata
ggtgctcccatccctggttacacctcaagttagtgcctggtctcctcccc
ccacccccctccgtcttgctctcttcctccctctctgaagctcacatagc
tgacagcagttcacatagctgacagcagtttttgctatgtacaagggaca
gcaactccttggttaggtccaagtaatcttaggaagctgaggatgttgtt
ccgggaaagcccaggagcttcactaaaacttcagtttctagaattctgta
ttttagatagagagggggaggagtgtcatagagatgttgactccaggtga
ctggaggggctggggttggggct
gaattccagacaagggtggccttttgacatgaggtagcagctgcattctg
attatagctggctttcctctggaagaagaggttcctgaagccgctatatg
gcacctatacttctgtaatctcaagttgtcttttcaactagctcttagag
aaaacgatatgattgctagaagttttagggactgtgagatgcacaaagtt
ctactttaatctatggggagagaaaatggttaaatggtcaagtacagaat
aaaacagtgttggaaaggaaggattagccctattgtataagaagaaactg
aagataaaggcattaaatcccctaaagtgaagatcccagggccccagcag
cctcccactggatgtgcagaggacttggagaatctcctgggggagctcag
ggcactgtggcagatttcacgttgccaaggaacacagcagagccaggtcg
agaactgtttttttttttttttttttcctgcagttttctctcttgatctt
ttcttccccagttgaattgcctttattatcccaaacctaagctgggccaa
gaggtccagtttggtgtcctgctcatgctgaggaagtcctgaagaatttc
cagccactttagtgaaaacactactcagagaaaagcaattggcaaaaggt
ggtatcactgccggaagcaggtaccactgtgtaggagacatcactgtctc
tgcatagacaggtccttctcacggtgtgacctctgtgctttggacagttt
ctggcacacagtaaggtcacagggaggatttagtgaccgagtaagtgaca
gtgttcttagtatctttcaaaccaggagtaacaaaacttatcacttaagg
tgtcataaaacaaatgtagcgagtctctaccacactgaaaaaagaaaagt
aacaagaaataccagagtgtagtagttaatgacactagacagtgatctgt
aaagcaacatagaatctatatttttactttggccttatgattttaaagtg
ggaagtcactgacgatgccagtgattgcagcctgagctgagctggagcga
ggtgtggaaatgttcaatagaagcccagtcttctaaattggatttaaccc
aactctccttcagatccttgcacaaggagtctctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_106891812_106892886
seq2: B6Ng01-341A08.b_49_1121

seq1  GAATTCTCACACATTAGTGAGGCATATACAGCCTTTCACACTGGCCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACACATTAGTGAGGCATATACAGCCTTTCACACTGGCCAGAA  50

seq1  GCTATGTTGGCTGTTTTAGATGTTCACATGGCTAGCAGTACATGGCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTTGGCTGTTTTAGATGTTCACATGGCTAGCAGTACATGGCCACA  100

seq1  CTCTTCATTGCATAACAAAAAAAACAGTTTGGCAGGCAAAAAGATTTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCATTGCATAACAAAAAAAACAGTTTGGCAGGCAAAAAGATTTGTC  150

seq1  ACATAGAATACCCTGGGTACTCGGTAGGAGGCTATTTTAAAATGAGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAATACCCTGGGTACTCGGTAGGAGGCTATTTTAAAATGAGCTTC  200

seq1  GAGACTGAGAATGAAAAGGCATGAGCTGTATGTGGGACTGAGGATCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGAGAATGAAAAGGCATGAGCTGTATGTGGGACTGAGGATCTCCA  250

seq1  AGACTGACTCTTTCCACTTGGTTCAGTACCTTGAGTTAACCCTGCTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGACTCTTTCCACTTGGTTCAGTACCTTGAGTTAACCCTGCTCATT  300

seq1  TGCCACCCCAATCATTCCAAGACCTGCAGCTCAGATCCACATCTCACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCCCAATCATTCCAAGACCTGCAGCTCAGATCCACATCTCACAAT  350

seq1  TGATGCTCTGCCCCAATGTCCCATCCCATCCTCACCTCTTACCATCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTCTGCCCCAATGTCCCATCCCATCCTCACCTCTTACCATCCTTT  400

seq1  CTGTCCAATGAAGGACTTTCCATGGCTGGCTGCCCCTGAGAAAGGGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAATGAAGGACTTTCCATGGCTGGCTGCCCCTGAGAAAGGGTGAA  450

seq1  AAAGTCAGGCCTCAGTGGGACAAAGTACAGGTAGAGACTGGGGGAGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGGCCTCAGTGGGACAAAGTACAGGTAGAGACTGGGGGAGGGGG  500

seq1  CGTTCATGCAGGGGAGGGGCAGGAGGTAATGAGGTCTGAGCTTTTTGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCATGCAGGGGAGGGGCAGGAGGTAATGAGGTCTGAGCTTTTTGCAT  550

seq1  CTGTAATAATTAGACAAACTCAGGACCTCTGAGCTGATCCTTAATACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATAATTAGACAAACTCAGGACCTCTGAGCTGATCCTTAATACATT  600

seq1  GCTCAGTGCTGAGAGCCTGCAAGGCTGGTCTGCATGCACAGGGACCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGCTGAGAGCCTGCAAGGCTGGTCTGCATGCACAGGGACCACAG  650

seq1  GGAAGGGAAAGATGAGGAGGGTCTAGGAGAGACATGGATGTGTGAGGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGAAAGATGAGGAGGGTCTAGGAGAGACATGGATGTGTGAGGTCA  700

seq1  GGAGCAGAGGAGCCAGACGTGTCAAGTTTGCTTGGAGGCTAAGGCTGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGAGGAGCCAGACGTGTCAAGTTTGCTTGGAGGCTAAGGCTGATA  750

seq1  GGTGCTCCCATCCCTGGTTACACCTCAAGTTAGTGCCTGGTCTCCTCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCCCATCCCTGGTTACACCTCAAGTTAGTGCCTGGTCTCCTCCCC  800

seq1  CCACCCCCCTCCGTCTTGCTCTCTTCCTCCCTCTCTGAAGCTCACATAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCCTCCGTCTTGCTCTCTTCCTCCCTCTCTGAAGCTCACATAGC  850

seq1  TGACAGCAGTTCACATAGCTGACAGCAGTTTTTGCTATGTACAAGGGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCAGTTCACATAGCTGACAGCAGTTTTTGCTATGTACAAGGGACA  900

seq1  GCAACTCCTTGGTTAGGTCCAAGTAATCTTAGGAAGGCTGAGGATGTTGT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCAACTCCTTGGTTAGGTCCAAGTAATCTTAGGAA-GCTGAGGATGTTGT  949

seq1  TCCGGGAAAGCCCA-GAGCTTCACTAAAACTTCAGTTTCTAG-ATTCTGT  998
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  TCCGGGAAAGCCCAGGAGCTTCACTAAAACTTCAGTTTCTAGAATTCTGT  999

seq1  ATTTTTAGAATAGAGAAGGGGGAGAGTGTCATAAGAGATG-TGACCTCAG  1047
      | |||||| ||||||| ||||  ||||||||| ||||||| ||||  |||
seq2  A-TTTTAG-ATAGAGAGGGGGAGGAGTGTCAT-AGAGATGTTGACTCCAG  1046

seq1  GTGACTGGAGGTGCTGGGGTTTGGGGCT  1075
      ||||||||||| ||||||| ||||||||
seq2  GTGACTGGAGGGGCTGGGG-TTGGGGCT  1073

seq1: chr3_107022664_107023807
seq2: B6Ng01-341A08.g_69_1205 (reverse)

seq1  CTCAGAGACTTCCCTTTGTGCAGGGGGATCCTGAGGAGA-TGGGGTAAAA  49
      ||||||||||   | |||||||   |||||   |||||| | |||| |||
seq2  CTCAGAGACT---CCTTGTGCA--AGGATCTGAAGGAGAGTTGGGTTAAA  45

seq1  TCACAATAAGGAAGACTGGGC-TCTATGAACCATCTCCACA-CTCGCTCC  97
      || ||||   ||||||||||| |||||  | ||| |||||| |||||| |
seq2  TC-CAATTTAGAAGACTGGGCTTCTATTGAACATTTCCACACCTCGCT-C  93

seq1  CAGCTCAGCCTCTGGCTGGCAATCCACTGGCATCGTCAGTGACTTTCCAA  147
      |||||||| ||| |||| ||||| ||||||||||||||||||| |||| |
seq2  CAGCTCAG-CTCAGGCT-GCAAT-CACTGGCATCGTCAGTGAC-TTCCCA  139

seq1  CTTTAAAAATCATAA-GCCAAAGTAAAATAATAGATTCTATGTTGCTTTA  196
      |||| |||||||||| ||||||||||||  ||||||||||||||||||||
seq2  CTTT-AAAATCATAAGGCCAAAGTAAAAATATAGATTCTATGTTGCTTTA  188

seq1  CAGATCACTGTCTAGTGTCATTAACTACTACACTCTGGTATTTCTTGTTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCACTGTCTAGTGTCATTAACTACTACACTCTGGTATTTCTTGTTA  238

seq1  CTTTTC-TTTTTCAGTGTGGTAGAGACTCGCTACATTTGTTTTATGACAC  295
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTTTCAGTGTGGTAGAGACTCGCTACATTTGTTTTATGACAC  288

seq1  CTTAAGTGATAAGTTTTGTTACTCCTGGTTTGAAAGATACTAAGAACACT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTGATAAGTTTTGTTACTCCTGGTTTGAAAGATACTAAGAACACT  338

seq1  GTCACTTACTCGGTCACTAAATCCTCCCTGTGACCTTACTGTGTGCCAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTACTCGGTCACTAAATCCTCCCTGTGACCTTACTGTGTGCCAGA  388

seq1  AACTGTCCAAAGCACAGAGGTCACACCGTGAGAAGGACCTGTCTATGCAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCCAAAGCACAGAGGTCACACCGTGAGAAGGACCTGTCTATGCAG  438

seq1  AGACAGTGATGTCTCCTACACAGTGGTACCTGCTTCCGGCAGTGATACCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTGATGTCTCCTACACAGTGGTACCTGCTTCCGGCAGTGATACCA  488

seq1  CCTTTTGCCAATTGCTTTTCTCTGAGTAGTGTTTTCACTAAAGTGGCTGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGCCAATTGCTTTTCTCTGAGTAGTGTTTTCACTAAAGTGGCTGG  538

seq1  AAATTCTTCAGGACTTCCTCAGCATGAGCAGGACACCAAACTGGACCTCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTCAGGACTTCCTCAGCATGAGCAGGACACCAAACTGGACCTCT  588

seq1  TGGCCCAGCTTAGGTTTGGGATAATAAAGGCAATTCAACTGGGGAAGAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAGCTTAGGTTTGGGATAATAAAGGCAATTCAACTGGGGAAGAAA  638

seq1  AGATCAAGAGAGAAAACTGCAGGAAAAAAAAAAAAAAAAAAACAGTTCTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAGAGAGAAAACTGCAGGAAAAAAAAAAAAAAAAAAACAGTTCTC  688

seq1  GACCTGGCTCTGCTGTGTTCCTTGGCAACGTGAAATCTGCCACAGTGCCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGCTCTGCTGTGTTCCTTGGCAACGTGAAATCTGCCACAGTGCCC  738

seq1  TGAGCTCCCCCAGGAGATTCTCCAAGTCCTCTGCACATCCAGTGGGAGGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCCCCCAGGAGATTCTCCAAGTCCTCTGCACATCCAGTGGGAGGC  788

seq1  TGCTGGGGCCCTGGGATCTTCACTTTAGGGGATTTAATGCCTTTATCTTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGCCCTGGGATCTTCACTTTAGGGGATTTAATGCCTTTATCTTC  838

seq1  AGTTTCTTCTTATACAATAGGGCTAATCCTTCCTTTCCAACACTGTTTTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTCTTATACAATAGGGCTAATCCTTCCTTTCCAACACTGTTTTA  888

seq1  TTCTGTACTTGACCATTTAACCATTTTCTCTCCCCATAGATTAAAGTAGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTACTTGACCATTTAACCATTTTCTCTCCCCATAGATTAAAGTAGA  938

seq1  ACTTTGTGCATCTCACAGTCCCTAAAACTTCTAGCAATCATATCGTTTTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTGCATCTCACAGTCCCTAAAACTTCTAGCAATCATATCGTTTTC  988

seq1  TCTAAGAGCTAGTTGAAAAGACAACTTGAGATTACAGAAGTATAGGTGCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAGCTAGTTGAAAAGACAACTTGAGATTACAGAAGTATAGGTGCC  1038

seq1  ATATAGCGGCTTCAGGAACCTCTTCTTCCAGAGGAAAGCCAGCTATAATC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCGGCTTCAGGAACCTCTTCTTCCAGAGGAAAGCCAGCTATAATC  1088

seq1  AGAATGCAGCTGCTACCTCATGTCAAAAGGCCACCCTTGTCTGGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCAGCTGCTACCTCATGTCAAAAGGCCACCCTTGTCTGGAATTC  1137