BAC Information

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BAC

Clone NameB6Ng01-341A13
Chromosome3 (Build37)
Map Location 12,217,449 - 12,345,537
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667999
Downstream geneEG621965, LOC100039798, EG668033, LOC668037
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341A13.bB6Ng01-341A13.g
ACCGA124546GA124547
length9421,137
definitionB6Ng01-341A13.b B6Ng01-341A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,344,596 - 12,345,537)(12,217,449 - 12,218,600)
sequence
gaattctccagatggatgagtaggaaaacaatgtgtcatttttttcttta
tgatttctgccacataaaatagagcagtaaattccaatgctatttaagag
gatctcagcttgtggttaaggtctatgaaacacttcagccttcatgcttc
ttagctctcctttgcacccagccctgtgaaatgttcacaggtcctcgatg
acaattccctcggatagagccaactgtcttccaagctcagtatacacaaa
aattctcagatcttgtctaaattaggatggctttattctaggcatcctaa
aaaatgtattgcagtgagttgattttacgaggtagtatttcctggtttaa
acacatgctgtgtcgtggggcgtataattgaactacttcacacccgctat
caacttagccttacagcattagaaaattacactagatacattatatgaat
gagctgtatcactgaattatataaaaatgggatgttttcatgaaacattg
tggtcattcatttttaaatatgtgtaaatatcatgaaattattcatttta
actgtcttctatgtttaaccatacatttttaattgtgtatattccttgaa
tttagtccaatgtataaaaatacagaagtttaaacactttttacaagtat
acaattgattcaataattctttgcatttgtaaacatagtactgttttttt
aagtaattacatatatattcactctatacatcaggatgtgatttaaagag
aagataataaggaatgtaaatgagtgtggaagtctgtgaatagtgattgc
aaaattctgtgtgctacccaggactattactatacagaagaatgtacaca
aaaagaaaagcaaactctttgttagaaatccaaacaggtgtacatactta
aaagttacctctgatatatacatatatatgtgtgtgtgtata

gaattcaaaagggattcttctttaggaagatatgattcaacaactataaa
agaaatcttattagaccaataattttagcaatctttggaatgttttttgt
tatacaggtgctttgtttataataatgttgatttagtaaactctacatta
cctctcataatcaaaaggttgtagtaccatataaaatattaaatgaagaa
atattctgaattctgggttatttagcagtatttgagtaattactcacaag
aaaagtattactggacacttaaaatctcaaaaagttagacatagcaagtt
ccttgccagtgagacattgtctcaaaaacaaacaaacaaaaaattggtag
accaaaagataaaatcatactatgcatcaagctagtgtaagaccctaact
caatgtgtttcttagacccctagaaacaaagtccagcatggagttctttg
ttctttcaccttcagcctgaaaaactgatgaccactgggtgacccaccta
attccaggaactggctcaccaccatcctgacccacccaggcgcctgattc
attatgtaagggaccaagaatgtttgccaaagatagcctgtaacctttcc
gtaagagatgagctgtaattcatcattcccattcttatgatgtttactca
gcttcccctttctttgtttttttttttctttattcctttaaaaaccctca
tttgcaactgctgagggttgctctcctctgcccctgtgcaggttataagc
ttggcctcagcatgctgatccccgaataaacctcatgcaatattgcatca
agaatggtctctctcgagttatggacttgaacgagggtctccctgaaaag
gggatctttcactagtactgttagaggttgaagcacctcattataatctt
gatttggacttctgttaactgtagtatttctgtgttaaataaatccacat
ggtatataaactaattttaatattctaatcaaattagattggaaatctat
caaattttgtaatgtattgtgacatatcattgcgatcccaaatatcatta
tgagatcaaatcataattcatcttatatattttgattgcatccttttttt
ttagacttattatttatatgtagtacactgtactgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_12344596_12345537
seq2: B6Ng01-341A13.b_43_984 (reverse)

seq1  TATACACACACACATATATATGTATATATCAGAGGTAACTTTTAAGTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACACACACATATATATGTATATATCAGAGGTAACTTTTAAGTATG  50

seq1  TACACCTGTTTGGATTTCTAACAAAGAGTTTGCTTTTCTTTTTGTGTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTGTTTGGATTTCTAACAAAGAGTTTGCTTTTCTTTTTGTGTACA  100

seq1  TTCTTCTGTATAGTAATAGTCCTGGGTAGCACACAGAATTTTGCAATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGTATAGTAATAGTCCTGGGTAGCACACAGAATTTTGCAATCAC  150

seq1  TATTCACAGACTTCCACACTCATTTACATTCCTTATTATCTTCTCTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACAGACTTCCACACTCATTTACATTCCTTATTATCTTCTCTTTAA  200

seq1  ATCACATCCTGATGTATAGAGTGAATATATATGTAATTACTTAAAAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATCCTGATGTATAGAGTGAATATATATGTAATTACTTAAAAAAAC  250

seq1  AGTACTATGTTTACAAATGCAAAGAATTATTGAATCAATTGTATACTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTATGTTTACAAATGCAAAGAATTATTGAATCAATTGTATACTTGT  300

seq1  AAAAAGTGTTTAAACTTCTGTATTTTTATACATTGGACTAAATTCAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGTTTAAACTTCTGTATTTTTATACATTGGACTAAATTCAAGGA  350

seq1  ATATACACAATTAAAAATGTATGGTTAAACATAGAAGACAGTTAAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACAATTAAAAATGTATGGTTAAACATAGAAGACAGTTAAAATGA  400

seq1  ATAATTTCATGATATTTACACATATTTAAAAATGAATGACCACAATGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCATGATATTTACACATATTTAAAAATGAATGACCACAATGTTT  450

seq1  CATGAAAACATCCCATTTTTATATAATTCAGTGATACAGCTCATTCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAACATCCCATTTTTATATAATTCAGTGATACAGCTCATTCATAT  500

seq1  AATGTATCTAGTGTAATTTTCTAATGCTGTAAGGCTAAGTTGATAGCGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATCTAGTGTAATTTTCTAATGCTGTAAGGCTAAGTTGATAGCGGG  550

seq1  TGTGAAGTAGTTCAATTATACGCCCCACGACACAGCATGTGTTTAAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGTAGTTCAATTATACGCCCCACGACACAGCATGTGTTTAAACCA  600

seq1  GGAAATACTACCTCGTAAAATCAACTCACTGCAATACATTTTTTAGGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATACTACCTCGTAAAATCAACTCACTGCAATACATTTTTTAGGATG  650

seq1  CCTAGAATAAAGCCATCCTAATTTAGACAAGATCTGAGAATTTTTGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAATAAAGCCATCCTAATTTAGACAAGATCTGAGAATTTTTGTGTA  700

seq1  TACTGAGCTTGGAAGACAGTTGGCTCTATCCGAGGGAATTGTCATCGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGCTTGGAAGACAGTTGGCTCTATCCGAGGGAATTGTCATCGAGG  750

seq1  ACCTGTGAACATTTCACAGGGCTGGGTGCAAAGGAGAGCTAAGAAGCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGAACATTTCACAGGGCTGGGTGCAAAGGAGAGCTAAGAAGCATG  800

seq1  AAGGCTGAAGTGTTTCATAGACCTTAACCACAAGCTGAGATCCTCTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGAAGTGTTTCATAGACCTTAACCACAAGCTGAGATCCTCTTAAA  850

seq1  TAGCATTGGAATTTACTGCTCTATTTTATGTGGCAGAAATCATAAAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTGGAATTTACTGCTCTATTTTATGTGGCAGAAATCATAAAGAAA  900

seq1  AAAATGACACATTGTTTTCCTACTCATCCATCTGGAGAATTC  942
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACACATTGTTTTCCTACTCATCCATCTGGAGAATTC  942


seq1: chr3_12217449_12218600
seq2: B6Ng01-341A13.g_67_1203

seq1  GAATTCAAAAGGGATTCTTCTTTAGGAAGATATGATTCAACAACTATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGGGATTCTTCTTTAGGAAGATATGATTCAACAACTATAAA  50

seq1  AGAAATCTTATTAGACCAATAATTTTAGCAATCTTTGGAATGTTTTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTTATTAGACCAATAATTTTAGCAATCTTTGGAATGTTTTTTGT  100

seq1  TATACAGGTGCTTTGTTTATAATAATGTTGATTTAGTAAACTCTACATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGGTGCTTTGTTTATAATAATGTTGATTTAGTAAACTCTACATTA  150

seq1  CCTCTCATAATCAAAAGGTTGTAGTACCATATAAAATATTAAATGAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCATAATCAAAAGGTTGTAGTACCATATAAAATATTAAATGAAGAA  200

seq1  ATATTCTGAATTCTGGGTTATTTAGCAGTATTTGAGTAATTACTCACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTGAATTCTGGGTTATTTAGCAGTATTTGAGTAATTACTCACAAG  250

seq1  AAAAGTATTACTGGACACTTAAAATCTCAAAAAGTTAGACATAGCAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATTACTGGACACTTAAAATCTCAAAAAGTTAGACATAGCAAGTT  300

seq1  CCTTGCCAGTGAGACATTGTCTCAAAAACAAACAAACAAAAAATTGGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCAGTGAGACATTGTCTCAAAAACAAACAAACAAAAAATTGGTAG  350

seq1  ACCAAAAGATAAAATCATACTATGCATCAAGCTAGTGTAAGACCCTAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAGATAAAATCATACTATGCATCAAGCTAGTGTAAGACCCTAACT  400

seq1  CAATGTGTTTCTTAGACCCCTAGAAACAAAGTCCAGCATGGAGTTCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGTTTCTTAGACCCCTAGAAACAAAGTCCAGCATGGAGTTCTTTG  450

seq1  TTCTTTCACCTTCAGCCTGAAAAACTGATGACCACTGGGTGACCCACCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCACCTTCAGCCTGAAAAACTGATGACCACTGGGTGACCCACCTA  500

seq1  ATTCCAGGAACTGGCTCACCACCATCCTGACCCACCCAGGCGCCTGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGGAACTGGCTCACCACCATCCTGACCCACCCAGGCGCCTGATTC  550

seq1  ATTATGTAAGGGACCAAGAATGTTTGCCAAAGATAGCCTGTAACCTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTAAGGGACCAAGAATGTTTGCCAAAGATAGCCTGTAACCTTTCC  600

seq1  GTAAGAGATGAGCTGTAATTCATCATTCCCATTCTTATGATGTTTACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGATGAGCTGTAATTCATCATTCCCATTCTTATGATGTTTACTCA  650

seq1  GCTTCCCCTTTCTTTGTTTTTTTTTTTCTTTATTCCTTTAAAAACCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCCTTTCTTTGTTTTTTTTTTTCTTTATTCCTTTAAAAACCCTCA  700

seq1  TTTGCAACTGCTGAGGGTTGCTCTCCTCTGCCCCTGTGCAGGTTATAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAACTGCTGAGGGTTGCTCTCCTCTGCCCCTGTGCAGGTTATAAGC  750

seq1  TTGGCCTCAGCATGCTGATCCCCGAATAAACCTCATGCAATATTGCATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTCAGCATGCTGATCCCCGAATAAACCTCATGCAATATTGCATCA  800

seq1  AGAATGGTCTCTCTCGAGTTATGGACTTGAACGAGGGTCTCCCTGAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGTCTCTCTCGAGTTATGGACTTGAACGAGGGTCTCCCTGAAAAG  850

seq1  GGGATCTTTCACTAGTACTGTTAGAGGTTGAAGCACCTCATTATAATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTTTCACTAGTACTGTTAGAGGTTGAAGCACCTCATTATAATCTT  900

seq1  GATTTGGACTTCTGTTAACTGTAGTATTTCTGTGTTAAATAAATCCACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGACTTCTGTTAACTGTAGTATTTCTGTGTTAAATAAATCCACAT  950

seq1  GGTATATAAACTAATTTTAAATATCTAAATCAAATTAGATTGGAAAATCT  1000
      |||||||||||||||||| |||||   |||||||||||||||| ||||||
seq2  GGTATATAAACTAATTTT-AATATTCTAATCAAATTAGATTGG-AAATCT  998

seq1  ATCAAATTTTGTAAATGTA-TGTGACAATATCATTGCGAATCCAAATAAT  1049
      |||||||||||| |||||| |||||| ||||||||||||  |||||| ||
seq2  ATCAAATTTTGT-AATGTATTGTGAC-ATATCATTGCGATCCCAAAT-AT  1045

seq1  CATTATGAGATCAAAATCATAAATCATCTTATATATTTTTGTATTGGCAT  1099
      |||||||||||| ||||||||| ||||||||||||||||   ||| ||| 
seq2  CATTATGAGATC-AAATCATAATTCATCTTATATATTTT--GATT-GCA-  1090

seq1  TCCTTTTTTTTTTTAAGATTTATTTATTTATATGTAAGTACACTGTAGCT  1149
      ||||||||||||   ||| ||| |||||||||||| ||||||||||| ||
seq2  TCCTTTTTTTTT---AGACTTA-TTATTTATATGT-AGTACACTGTA-CT  1134

seq1  GTC  1152
      |||
seq2  GTC  1137


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