BAC Information

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BAC

Clone NameB6Ng01-341G09
Chromosome3 (Build37)14 (Build37)
Map Location 123,127,777 - 123,127,85555,832,232 - 55,833,327
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik
Downstream genePrss12, EG668804, Ndst3, LOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341G09.bB6Ng01-341G09.g
ACCGA124790GA124791
length4731,091
definitionB6Ng01-341G09.b B6Ng01-341G09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,127,777 - 123,127,855)(55,832,232 - 55,833,327)
sequence
gaattcacaactgaggaatctcaaatggctgaaaggcacctaaagaaatg
ttcaaagtccttagtgatcagagaaatgcaaatcaaaatggccctgagat
tctaccttataccaatcagaatagctaagatcaaagcctcaggtgacaac
acatggtggagaggatgtggagaaagaggaacactcctccattgctggtg
gaattgcaaacttgtacagccactctggaaatcaatctggaggttcctca
gaaaattggaaatagatctacctgaagacccagttataccactcttggga
atatacccaaaagatgccccatcatgccacaggggcaagtgttccactaa
gttcatagcagacttatttgtgatagccagaagatggaaacaacctagat
gtcccacggcagaagaatggatacagaaaaagtggttcatttacacaatg
gaatggtactcagctattaaaaa
gaattctgatctcctgaatatttctgttcttttgatcaggaggattaagg
agtggaaaagttgatgtttgcttcttgtgttaccaggtaaatgggagtgg
agtccaaagctaaccttgagggaggagtctattcaaactgtcctcctaaa
ctactgttctctgtctagctattgagcatcacccctctctagaattgata
ccctaaaacttcttacaacatggactaaagttgggggatagagataacct
attttcttcatgatactccagagccccagttccaaagtgcttgccaggag
gaattggagtttggcctcaccctcacatacaatttgaaggcaaggggaca
agagccaagctgccttctgggactcctggtctctgcataggacagagcca
aggacaattttggcttctgaccaaggacaagaatggaactattctttgca
gtgtccttgtccctaaaatgcttttctgtttcggtctcctgttcccatca
agacttttcaaggcagcacagtcctctcccatcatcctgagaggagaact
gccaccatcccgatatctccagcgagggccctgttattctcccccacctt
cctaaaggatacatgagagagaagtcgtaggggtgggagcaaggccagag
cgtctcgagacttgaggaaaaatatcaagcaagttatggtggagctcagg
caccagagaggctgaggcagcctcagctacatagtaagaccatgcagcat
aagcctgtggctgggcggaggtgggagaggggctgagtatgcataataac
aaggccttaaaaaggagagagagaatcaaaatcattagggaccaaatcaa
tagttcagtttcaccccctccgtctcttctcaaatgcatgagagtaagat
ggtttcacagcaagaaatggatcgtcttctcttacaaatctggtttttgg
aaaagagagacccactcagccctgtgggtcatacacaatagcgatgtctt
tccactttcattaatgaagaactctctgggcacgaatactcaacaatatg
ccgattcttcagatagtcaaggtctccctcaggtatcttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_123127777_123127855
seq2: B6Ng01-341G09.b_357_520 (reverse)

seq1  TTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTG  50
      |||||||||||||||||  | ||||||||||||||| ||||| |||||||
seq2  TTTTTAATAGCTGAGTACCATTCCATTGTGTAAATGAACCACTTTTTCTG  50

seq1  TATCCATTCCTCTGTTGAGGGGCATCT---TT------------------  79
      ||||||||| ||||  | ||| |||||   ||                  
seq2  TATCCATTCTTCTGCCGTGGGACATCTAGGTTGTTTCCATCTTCTGGCTA  100

seq1  --------------------------------------------------  79
                                                        
seq2  TCACAAATAAGTCTGCTATGAACTTAGTGGAACACTTGCCCCTGTGGCAT  150

seq1  --------------  79
                    
seq2  GATGGGGCATCTTT  164

seq1: chr14_55832232_55833327
seq2: B6Ng01-341G09.g_66_1156

seq1  GAATTCTGATCTCCTGAATATTTCTGTTCTTTTGATCAGGAGGATTAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATCTCCTGAATATTTCTGTTCTTTTGATCAGGAGGATTAAGG  50

seq1  AGTGGAAAAGTTGATGTTTGCTTCTTGTGTTACCAGGTAAATGGGAGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAAAGTTGATGTTTGCTTCTTGTGTTACCAGGTAAATGGGAGTGG  100

seq1  AGTCCAAAGCTAACCTTGAGGGAGGAGTCTATTCAAACTGTCCTCCTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAAGCTAACCTTGAGGGAGGAGTCTATTCAAACTGTCCTCCTAAA  150

seq1  CTACTGTTCTCTGTCTAGCTATTGAGCATCACCCCTCTCTAGAATTGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTTCTCTGTCTAGCTATTGAGCATCACCCCTCTCTAGAATTGATA  200

seq1  CCCTAAAACTTCTTACAACATGGACTAAAGTTGGGGGATAGAGATAACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAACTTCTTACAACATGGACTAAAGTTGGGGGATAGAGATAACCT  250

seq1  ATTTTCTTCATGATACTCCAGAGCCCCAGTTCCAAAGTGCTTGCCAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTCATGATACTCCAGAGCCCCAGTTCCAAAGTGCTTGCCAGGAG  300

seq1  GAATTGGAGTTTGGCCTCACCCTCACATACAATTTGAAGGCAAGGGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGAGTTTGGCCTCACCCTCACATACAATTTGAAGGCAAGGGGACA  350

seq1  AGAGCCAAGCTGCCTTCTGGGACTCCTGGTCTCTGCATAGGACAGAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAAGCTGCCTTCTGGGACTCCTGGTCTCTGCATAGGACAGAGCCA  400

seq1  AGGACAATTTTGGCTTCTGACCAAGGACAAGAATGGAACTATTCTTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAATTTTGGCTTCTGACCAAGGACAAGAATGGAACTATTCTTTGCA  450

seq1  GTGTCCTTGTCCCTAAAATGCTTTTCTGTTTCGGTCTCCTGTTCCCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTGTCCCTAAAATGCTTTTCTGTTTCGGTCTCCTGTTCCCATCA  500

seq1  AGACTTTTCAAGGCAGCACAGTCCTCTCCCATCATCCTGAGAGGAGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTTCAAGGCAGCACAGTCCTCTCCCATCATCCTGAGAGGAGAACT  550

seq1  GCCACCATCCCGATATCTCCAGCGAGGGCCCTGTTATTCTCCCCCACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATCCCGATATCTCCAGCGAGGGCCCTGTTATTCTCCCCCACCTT  600

seq1  CCTAAAGGATACATGAGAGAGAAGTCGTAGGGGTGGGAGCAAGGCCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGGATACATGAGAGAGAAGTCGTAGGGGTGGGAGCAAGGCCAGAG  650

seq1  CGTCTCGAGACTTGAGGAAAAATATCAAGCAAGTTATGGTGGAGCTCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCGAGACTTGAGGAAAAATATCAAGCAAGTTATGGTGGAGCTCAGG  700

seq1  CACCAGAGAGGCTGAGGCAGCCTCAGCTACATAGTAAGACCATGCAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAGAGGCTGAGGCAGCCTCAGCTACATAGTAAGACCATGCAGCAT  750

seq1  AAGCCTGTGGCTGGGCGGAGGTGGGAGAGGGGCTGAGTATGCATAATAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGTGGCTGGGCGGAGGTGGGAGAGGGGCTGAGTATGCATAATAAC  800

seq1  AAGGCCTTAAAAAGGAGAGAGAGAATCAAAATCATTAGGGACCAAATCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTTAAAAAGGAGAGAGAGAATCAAAATCATTAGGGACCAAATCAA  850

seq1  TAGTTCAGTTTCA-CCCCTCCGTCTCTTCTCAAATGCATGAGAGTAAGAT  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAGTTTCACCCCCTCCGTCTCTTCTCAAATGCATGAGAGTAAGAT  900

seq1  GGTTTCACAGCAAGAAATGGATCGTCTTCTCTTACAAAATCT-GTTTTTG  948
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  GGTTTCACAGCAAGAAATGGATCGTCTTCTCTTAC-AAATCTGGTTTTTG  949

seq1  GAAAAGAGAGACCCACTCAGCCCCTGTGGGTCATACACAATAGCGATGTC  998
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAAAAGAGAGACCCACTCAG-CCCTGTGGGTCATACACAATAGCGATGTC  998

seq1  TTTCCACTTTCATTTAATGAAGAACTCTCTGGGGGCACGAATACTCAACA  1048
      |||||||||||| |||||||||||||||||  ||||||||||||||||||
seq2  TTTCCACTTTCA-TTAATGAAGAACTCTCT--GGGCACGAATACTCAACA  1045

seq1  ATATGCCGATTCCTTTCCAGATAGTCAAGGTCT-CCTCAGGTATCTTAT  1096
      ||||||||||||   | |||||||||||||||| |||||||||||||||
seq2  ATATGCCGATTC---TTCAGATAGTCAAGGTCTCCCTCAGGTATCTTAT  1091