BAC Information

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BAC

Clone NameB6Ng01-341K04
Chromosome3 (Build37)
Map Location 61,486,229 - 61,573,071
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC676933, LOC100040501, EG666853, P2ry1, Rap2b, LOC666891
Downstream geneLOC669910, LOC676965, 4631416L12Rik, Dhx36, Gpr149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341K04.bB6Ng01-341K04.g
ACCGA124962GA124963
length1,1221,099
definitionB6Ng01-341K04.b B6Ng01-341K04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,571,984 - 61,573,071)(61,486,229 - 61,487,334)
sequence
gaattcctgtatgcacttaagatactttaattcttattatatatatacat
agttgaaatttatattgtagcatataattataactggaattctaaaatgt
tttatgggagtgatggtacctaaatcttcctgtaacaaatgcaaaaatga
tgaaagattttataaaaatatgaagtctatagtacattcatgcagaacca
tttaatataatttaagttacatattttattttgactggctggtctccaac
actcagcacataattgaataaatagaaaaaaaaatagcaaagctttcagg
atcttccaaaaagcttaattgtttctagccaactctttttattcaaacag
cagtactctgaatgcctcaatgtgataaagattttactatatttacttat
tcactatgctactacagactcactaaaaacatacataattcaacataata
acattgcatattttacagttggttttatgaatgaataaaaaacttgtatg
aatataaacttatttatttacacagttctaaagtttttataaaaagacct
aaaagctgttctctgaattttattttcaggtggtttgaaataaatacatc
agaaattctggtagatctctttaaaaataagaaggtaaattactgaagat
accacacactccatacataggacttggagggatcaagatagaactgatgt
gaaatcctcctccgtgaagactagcactcacactatctaaggtgctctgc
aagccaccaaggaaaaagactaatagctccacctaaatgtaaaacctgcc
aaccacatcaacgattggaccagcaagatatccacagtggtgaaatgagg
cacttatatcttgagggtaaccattagctatctagttgtacttaaaggca
tatttgctgggagaaaatgtattactgatactataaatttagtcaactac
ctatagctgaaaggccatacaccttaaagagagcagactattgccatgtt
ctaaatactgtagtctacacttctcaaacttctagtgtgtgacactttaa
taatagtcctcatattgtggtgacacccacttataaaaggttatttttgt
tgctactttgtagacttagatt

gaattctcttttctctgattcttgcctgcatttgtttacatttcttttct
tgacagtacatattctgactgcagagagttatcttaatgtcgttttaatt
atcgtttccctgatggctaatggtgttgaacttttttcaaatattcaatt
ttaatctgcatttttcttttttgaactgtctagtcagtcattagtccact
tactggtctgatgacattttgtaatgtttaatttttgagttagttgtaga
atctagtgatttatcaacagaatgagtaggtggaaagatttttctccttt
tctcttgtctcttttgctgtgcagaaccttttaaatttatttagactcat
taatataatacaattatatgttacatgtgtttaaatttagtattttattt
aagtaaatgagatatttaagtgattttttatatgaattacccaacttact
tgcctctgaattttctactgtaagactgttccacgtcatttgccatgtgt
attactcagacagaaagtactctgagtactaagtggtcctcccagggatt
gtaattagccaaagttcttagttttggttgagcagatcaatgttctatga
ccttaaggacaatttttgagtaagtgaatataacccaatatttaagcata
attttattacatttatttattttgtgtgtatatttgcatgtggaggtcag
agttacttctcttctttttccaggtaggtttcagaaattaaactcatgtt
gttaggcttgatttaggatcttactacatcccttaagtatattcttatga
cataatctgtccttatttttaattaatttgaggtgataaaacaataacat
ttcaagatatagattaggcaaattgaaaccaataacttaaaaaattctac
atgtaaatggttagtacatatatggagtatcttgtctgtctatgcatgta
tatactcactactatgttgccatgtacctatatctcatttgtttcaaatt
gcctacttgtcctagtatgactacacatgttagctgtattttaagctaat
tattttttaaaatcagaatattttctttatgacatttcaaatgtggtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_61571984_61573071
seq2: B6Ng01-341K04.b_87_1169 (reverse)

seq1  AATCTAAGTCTACAAAGTAGCAAC-AAAATAA-CTTTTATAGTTGGGTGT  48
      |||||||||||||||||||||||| ||||||| ||||||||  |||||||
seq2  AATCTAAGTCTACAAAGTAGCAACAAAAATAACCTTTTATAAGTGGGTGT  50

seq1  CACCACAATATGAGGAACTA-TATTAAAGTGTCACAACACTAGGAAGTTT  97
      ||||||||||||||| |||| |||||||||||||| |||||| |||||||
seq2  CACCACAATATGAGG-ACTATTATTAAAGTGTCAC-ACACTA-GAAGTTT  97

seq1  GAGAAGTTGTAGACTACAGTAATTTAGGAACATGGCAATAGTCTGCTCTT  147
      |||||| ||||||||||||| ||||| ||||||||||||||||||||| |
seq2  GAGAAG-TGTAGACTACAGT-ATTTA-GAACATGGCAATAGTCTGCTC-T  143

seq1  CTTTAAGGTGTATGGCCTTTTCAGCTATAGGTAGTTGACTAAATTTATAG  197
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTTAAGGTGTATGGCC-TTTCAGCTATAGGTAGTTGACTAAATTTATAG  192

seq1  TATCAGTAATACATTTTTCTCCCAGCAAATATGCC-TTAAGTACAACTAG  246
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  TATCAGTAATACA-TTTTCTCCCAGCAAATATGCCTTTAAGTACAACTAG  241

seq1  ATAGCTAATGGTTACCCTCAAGATATAAGTGCCTCATTTCACCACTGTGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTAATGGTTACCCTCAAGATATAAGTGCCTCATTTCACCACTGTGG  291

seq1  ATATCTTGCTGGTCCAATCGTTGATGTGGTTGGCAGGTTTTACATTTAGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTGCTGGTCCAATCGTTGATGTGGTTGGCAGGTTTTACATTTAGG  341

seq1  TGGAGCTATTAGTCTTTTTCCTTGGTGGCTTGCAGAGCACCTTAGATAGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTATTAGTCTTTTTCCTTGGTGGCTTGCAGAGCACCTTAGATAGT  391

seq1  GTGAGTGCTAGTCTTCACGGAGGAGGATTTCACATCAGTTCTATCTTGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGCTAGTCTTCACGGAGGAGGATTTCACATCAGTTCTATCTTGAT  441

seq1  CCCTCCAAGTCCTATGTATGGAGTGTGTGGTATCTTCAGTAATTTACCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAAGTCCTATGTATGGAGTGTGTGGTATCTTCAGTAATTTACCTT  491

seq1  CTTATTTTTAAAGAGATCTACCAGAATTTCTGATGTATTTATTTCAAACC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTTAAAGAGATCTACCAGAATTTCTGATGTATTTATTTCAAACC  541

seq1  ACCTGAAAATAAAATTCAGAGAACAGCTTTTAGGTCTTTTTATAAAAACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAAATAAAATTCAGAGAACAGCTTTTAGGTCTTTTTATAAAAACT  591

seq1  TTAGAACTGTGTAAATAAATAAGTTTATATTCATACAAGTTTTTTATTCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACTGTGTAAATAAATAAGTTTATATTCATACAAGTTTTTTATTCA  641

seq1  TTCATAAAACCAACTGTAAAATATGCAATGTTATTATGTTGAATTATGTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAAACCAACTGTAAAATATGCAATGTTATTATGTTGAATTATGTA  691

seq1  TGTTTTTAGTGAGTCTGTAGTAGCATAGTGAATAAGTAAATATAGTAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAGTGAGTCTGTAGTAGCATAGTGAATAAGTAAATATAGTAAAA  741

seq1  TCTTTATCACATTGAGGCATTCAGAGTACTGCTGTTTGAATAAAAAGAGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCACATTGAGGCATTCAGAGTACTGCTGTTTGAATAAAAAGAGT  791

seq1  TGGCTAGAAACAATTAAGCTTTTTGGAAGATCCTGAAAGCTTTGCTATTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGAAACAATTAAGCTTTTTGGAAGATCCTGAAAGCTTTGCTATTT  841

seq1  TTTTTTCTATTTATTCAATTATGTGCTGAGTGTTGGAGACCAGCCAGTCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTATTTATTCAATTATGTGCTGAGTGTTGGAGACCAGCCAGTCA  891

seq1  AAATAAAATATGTAACTTAAATTATATTAAATGGTTCTGCATGAATGTAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATATGTAACTTAAATTATATTAAATGGTTCTGCATGAATGTAC  941

seq1  TATAGACTTCATATTTTTATAAAATCTTTCATCATTTTTGCATTTGTTAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACTTCATATTTTTATAAAATCTTTCATCATTTTTGCATTTGTTAC  991

seq1  AGGAAGATTTAGGTACCATCACTCCCATAAAACATTTTAGAATTCCAGTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATTTAGGTACCATCACTCCCATAAAACATTTTAGAATTCCAGTT  1041

seq1  ATAATTATATGCTACAATATAAATTTCAACTATGTATATATA  1088
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATATGCTACAATATAAATTTCAACTATGTATATATA  1083


seq1: chr3_61486229_61487334
seq2: B6Ng01-341K04.g_67_1165

seq1  GAATTCTCTTTTCTCTGATTCTTGCCTGCATTTGTTTACATTTCTTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTCTCTGATTCTTGCCTGCATTTGTTTACATTTCTTTTCT  50

seq1  TGACAGTACATATTCTGACTGCAGAGAGTTATCTTAATGTCGTTTTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTACATATTCTGACTGCAGAGAGTTATCTTAATGTCGTTTTAATT  100

seq1  ATCGTTTCCCTGATGGCTAATGGTGTTGAACTTTTTTCAAATATTCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTTCCCTGATGGCTAATGGTGTTGAACTTTTTTCAAATATTCAATT  150

seq1  TTAATCTGCATTTTTCTTTTTTGAACTGTCTAGTCAGTCATTAGTCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTGCATTTTTCTTTTTTGAACTGTCTAGTCAGTCATTAGTCCACT  200

seq1  TACTGGTCTGATGACATTTTGTAATGTTTAATTTTTGAGTTAGTTGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTCTGATGACATTTTGTAATGTTTAATTTTTGAGTTAGTTGTAGA  250

seq1  ATCTAGTGATTTATCAACAGAATGAGTAGGTGGAAAGATTTTTCTCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTGATTTATCAACAGAATGAGTAGGTGGAAAGATTTTTCTCCTTT  300

seq1  TCTCTTGTCTCTTTTGCTGTGCAGAACCTTTTAAATTTATTTAGACTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGTCTCTTTTGCTGTGCAGAACCTTTTAAATTTATTTAGACTCAT  350

seq1  TAATATAATACAATTATATGTTACATGTGTTTAAATTTAGTATTTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAATACAATTATATGTTACATGTGTTTAAATTTAGTATTTTATTT  400

seq1  AAGTAAATGAGATATTTAAGTGATTTTTTATATGAATTACCCAACTTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATGAGATATTTAAGTGATTTTTTATATGAATTACCCAACTTACT  450

seq1  TGCCTCTGAATTTTCTACTGTAAGACTGTTCCACGTCATTTGCCATGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGAATTTTCTACTGTAAGACTGTTCCACGTCATTTGCCATGTGT  500

seq1  ATTACTCAGACAGAAAGTACTCTGAGTACTAAGTGGTCCTCCCAGGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCAGACAGAAAGTACTCTGAGTACTAAGTGGTCCTCCCAGGGATT  550

seq1  GTAATTAGCCAAAGTTCTTAGTTTTGGTTGAGCAGATCAATGTTCTATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAGCCAAAGTTCTTAGTTTTGGTTGAGCAGATCAATGTTCTATGA  600

seq1  CCTTAAGGACAATTTTTGAGTAAGTGAATATAACCCAATATTTAAGCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGGACAATTTTTGAGTAAGTGAATATAACCCAATATTTAAGCATA  650

seq1  ATTTTATTACATTTATTTATTTTGTGTGTATATTTGCATGTGGAGGTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTACATTTATTTATTTTGTGTGTATATTTGCATGTGGAGGTCAG  700

seq1  AGTTACTTCTCTTCTTTTTCCAGGTAGGTTTCAGAAATTAAACTCATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTCTCTTCTTTTTCCAGGTAGGTTTCAGAAATTAAACTCATGTT  750

seq1  GTTAGGCTTGATTTAGGATCTTACTACATCCCTTAAGTATATTCTTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGCTTGATTTAGGATCTTACTACATCCCTTAAGTATATTCTTATGA  800

seq1  CATAATCTGTCCTTATTTTTAATTAATTTGAGGTGATAAAACAATAACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCTGTCCTTATTTTTAATTAATTTGAGGTGATAAAACAATAACAT  850

seq1  TTCAAGATATAGATTAGGCAAATTGAAACCAATAACTTAAAAAATTCTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGATATAGATTAGGCAAATTGAAACCAATAACTTAAAAAATTCTAC  900

seq1  ATGTAAATGGTTAGTACATATATGGAGTATCTTGTCTGTCTATGCATGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATGGTTAGTACATATATGGAGTATCTTGTCTGTCTATGCATGTA  950

seq1  TATACTCACTACTATGTTTGCCATGTACCTATATCTCATTTGTTTCAAAT  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATACTCACTACTATG-TTGCCATGTACCTATATCTCATTTGTTTCAAAT  999

seq1  TGCCTACTTGTCTTAAGTATGACTACACATTGTAAGCTGTATTTTAAAAC  1050
      |||||||||||| | |||||||||||||| ||| |||||||||||  || 
seq2  TGCCTACTTGTCCT-AGTATGACTACACA-TGTTAGCTGTATTTT--AAG  1045

seq1  CTAATTTATTTTTTAAAAATCAG-ATATTTTCTTTATTGACATTTCAAAT  1099
      |||| ||||||||| |||||||| |||||||||||| |||||||||||||
seq2  CTAA-TTATTTTTT-AAAATCAGAATATTTTCTTTA-TGACATTTCAAAT  1092

seq1  GTTGTCC  1106
      || ||||
seq2  GTGGTCC  1099


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