BAC Information

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BAC

Clone NameB6Ng01-341P20
Chromosome13 (Build37)3 (Build37)
Map Location 103,325,098 - 103,325,131147,843,298 - 147,844,398
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePik3r1
Downstream geneCd180, Mast4, EG621312, EG432800, LOC432801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341P20.bB6Ng01-341P20.g
ACCGA125212GA125213
length3901,119
definitionB6Ng01-341P20.b B6Ng01-341P20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(103,325,098 - 103,325,131)(147,843,298 - 147,844,398)
sequence
gaattctctgatctatgatgatgatctgcatgcaaggtgagctaatgcaa
tagtgtcaaaaagtttgtaagagtatccaaccaatatctggttgtatttc
aggcccactctgtgagatgaaaaccatccttaatgttcttaacacttctg
ttgaatggtcaagaactgagacctgatagctcattgacttactgctgtta
tgttagtggaacatcgccataaaatgacttctagcaatattctgatatat
tcacagatttgtacgttgctcagtcatcattagagaagcttcatcctgta
gcatataagacatatatagagaaccacagctgcacagtatgcagagaatg
agagaacttggaacactcagccctaaatggaatgtctctg

gaattctttaccacgtagctagaacatgattgagagagatttttctccaa
ttctatgggttttattttcaactttttatccttgagttttgaaggttaaa
attagttaattgtggaaatataatttacctattgttctcttcttgttgtt
cttgttgttgttgttttctcttccttcttcttctcaatctcttctttctt
cttcttctcttttttctcttttcctacccctccttccttctccttttttc
tgcttctccttccctaaaagagaaatatttttcatctttctcttcctcct
gctttcccttattatccctgtgcttctccctgcccccgcccgactcctcc
ttcttcttttacttgtcctcctcctcctcttcttttcttttttattgatt
gcatttctagtttttatatttggaaaccactgtccatgtcatgaaaattt
actctttaattttactctaggaacatgtagttgtggctgtatcattagat
ctataactccttctaagttgattttatgcatggtctaatgagaaggtaag
gtctatgtatatttagtttaggatattaaaatatccagtcatcttgacat
tgaaatgttgtcttacataattgctgataataatgtaattatttatttgt
tgttattgtttgttattatctacttttactttgtttttgtttttaatttg
gcaattacctgtttcctcatcctcttcctttcactgaacctgaactgttt
ttagtttttcaaattaaacagttactggctttttaaaattaaatgtgttt
ccatctgttatctgtatctttaggcattcattttatttcctcacatgata
tgggcctgtttttttcttatatttcttttaacacaaaggtattttccctg
agtgtctttacaatctcttttcaacctactggtaatttataagtctgtga
tttaataatcaaatatttttaaaggttccagtttctgatgtcttctaaat
ttttccttaatgtaaactaagaacttatgtaatttccaaaggtttaaatt
cttatgccagacattcttacacaatactcattttatgccttagaattgga
gccctggtgtcatactgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_103325098_103325131
seq2: B6Ng01-341P20.b_403_436 (reverse)

seq1  CAGAGACATCCCATTTAGGGCTGAGTGTTCCAAG  34
      ||||||||| ||||||||||||||||||||||||
seq2  CAGAGACATTCCATTTAGGGCTGAGTGTTCCAAG  34


seq1: chr3_147843298_147844398
seq2: B6Ng01-341P20.g_70_1188

seq1  GAATTCTTTACCACGTAGCTAGAACATGATTGAGAGAGATTTTTCTCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACCACGTAGCTAGAACATGATTGAGAGAGATTTTTCTCCAA  50

seq1  TTCTATGGGTTTTATTTTCAACTTTTTATCCTTGAGTTTTGAAGGTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGGGTTTTATTTTCAACTTTTTATCCTTGAGTTTTGAAGGTTAAA  100

seq1  ATTAGTTAATTGTGGAAATATAATTTACCTATTGTTCTCTTCTTGTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTAATTGTGGAAATATAATTTACCTATTGTTCTCTTCTTGTTGTT  150

seq1  CTTGTTGTTGTTGTTTTCTCTTCCTTCTTCTTCTCAATCTCTTCTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGTTGTTGTTTTCTCTTCCTTCTTCTTCTCAATCTCTTCTTTCTT  200

seq1  CTTCTTCTCTTTTTTCTCTTTTCCTACCCCTCCTTCCTTCTCCTTTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTCTTTTTTCTCTTTTCCTACCCCTCCTTCCTTCTCCTTTTTTC  250

seq1  TGCTTCTCCTTCCCTAAAAGAGAAATATTTTTCATCTTTCTCTTCCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTCCTTCCCTAAAAGAGAAATATTTTTCATCTTTCTCTTCCTCCT  300

seq1  GCTTTCCCTTATTATCCCTGTGCTTCTCCCTGCCCCCGCCCGACTCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCCTTATTATCCCTGTGCTTCTCCCTGCCCCCGCCCGACTCCTCC  350

seq1  TTCTTCTTTTACTTGTCCTCCTCCTCCTCTTCTTTTCTTTTTTATTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTTACTTGTCCTCCTCCTCCTCTTCTTTTCTTTTTTATTGATT  400

seq1  GCATTTCTAGTTTTTATATTTGGAAACCACTGTCCATGTCATGAAAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTAGTTTTTATATTTGGAAACCACTGTCCATGTCATGAAAATTT  450

seq1  ACTCTTTAATTTTACTCTAGGAACATGTAGTTGTGGCTGTATCATTAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTAATTTTACTCTAGGAACATGTAGTTGTGGCTGTATCATTAGAT  500

seq1  CTATAACTCCTTCTAAGTTGATTTTATGCATGGTCTAATGAGAAGGTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACTCCTTCTAAGTTGATTTTATGCATGGTCTAATGAGAAGGTAAG  550

seq1  GTCTATGTATATTTAGTTTAGGATATTAAAATATCCAGTCATCTTGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGTATATTTAGTTTAGGATATTAAAATATCCAGTCATCTTGACAT  600

seq1  TGAAATGTTGTCTTACATAATTGCTGATAATAATGTAATTATTTATTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTTGTCTTACATAATTGCTGATAATAATGTAATTATTTATTTGT  650

seq1  TGTTATTGTTTGTTATTATCTACTTTTACTTTGTTTTTGTTTTTAATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTGTTTGTTATTATCTACTTTTACTTTGTTTTTGTTTTTAATTTG  700

seq1  GCAATTACCTGTTTCCTCATCCTCTTCCTTTCACTGAACCTGAACTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTACCTGTTTCCTCATCCTCTTCCTTTCACTGAACCTGAACTGTTT  750

seq1  TTAGTTTTTCAAATTAAACAGTTACTGGCTTTTTAAAATTAAATGTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTTCAAATTAAACAGTTACTGGCTTTTTAAAATTAAATGTGTTT  800

seq1  CCATCTGTTATCTGTATCTTTAGGCATTCA-TTTATTTCCTCACATGATA  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCATCTGTTATCTGTATCTTTAGGCATTCATTTTATTTCCTCACATGATA  850

seq1  T-GGCCTGTTTTTTTCTTATATTTCTTTTAACACAAA-GTA-TTTCCCTG  896
      | ||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  TGGGCCTGTTTTTTTCTTATATTTCTTTTAACACAAAGGTATTTTCCCTG  900

seq1  AGTGTC-TTACAATCTCTTTTCAA-CTACTGGTAATTTATAAGTCTGTTG  944
      |||||| ||||||||||||||||| |||||||||||||||||||||||  
seq2  AGTGTCTTTACAATCTCTTTTCAACCTACTGGTAATTTATAAGTCTGTGA  950

seq1  ATTAAT-ATCAAATATTTTTAAA-GTTCCAGTTTCTGATGTC-TCT-AAT  990
       ||||| |||||||||||||||| |||||||||||||||||| ||| |||
seq2  TTTAATAATCAAATATTTTTAAAGGTTCCAGTTTCTGATGTCTTCTAAAT  1000

seq1  TTTTCCTT-ATGTAAA--TAGTACTTATGTTATTTCAATAGTTTAAATTT  1037
      |||||||| |||||||   || |||||||| ||||| | || || || ||
seq2  TTTTCCTTAATGTAAACTAAGAACTTATGTAATTTCCAAAGGTTTAAATT  1050

seq1  CTTAATGCAGACAATTCTACACAATACTCCATTTATGCC-TAGAAT--GA  1084
      ||||   |||||| |  ||||||||||||  |||||||| ||||||  ||
seq2  CTTATGCCAGACATTCTTACACAATACTCATTTTATGCCTTAGAATTGGA  1100

seq1  GCC--TGTGTCATACTGTT  1101
      |||   |||||||||||||
seq2  GCCCTGGTGTCATACTGTT  1119


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