BAC Information

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BAC

Clone NameB6Ng01-342B15
Chromosome3 (Build37)
Map Location 65,673,824 - 65,798,472
singlet/doubletdoublet
Overlap geneCcnl1
Upstream geneLOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866
Downstream geneLOC625048, Veph1, Tpi-rs2, Ptx3, LOC625115, Shox2, Rsrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342B15.bB6Ng01-342B15.g
ACCGA125288GA125289
length1,1431,068
definitionB6Ng01-342B15.b B6Ng01-342B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,673,824 - 65,674,980)(65,797,393 - 65,798,472)
sequence
gaattccttgccacggcagcccagttcctgttaccttggcagaagtcaag
gattactttcctctcattgatggaacagttagtcatggatgaggcatatt
ggaagcttccaaatcttgcctctccctctcacgcaccctacatatcccca
ccctagtccttactctgatctaggaaatcttagaaacgacatattaagtg
aagattttccagggtaaccttcctttctggcgaagtttttggcgtttgtg
acatttgtatgtatacacccccataatccttagacgaaaaaccgttaaat
gctcacataagcaagtcttcagaagacgaatctcttgtacctcatttaac
ttttaagattattctcaatgtctctttttccagatattttaggatttagg
aggaaaatgaaattagttgaaacaaatcaaggtaagctgggtgatgagaa
atgaattgatgtctgcaaagatttcccgtgctgctcacaatctctctaga
gtgcctctcctctaaggtgtaggaagctctgctccttatctgttgacaga
aaacacaggctggggtccattctgcccagagcagcaacattcctgggacc
tcatcctttttcatacttaccatgggggtaaaaagctctgtataaagatg
gagtaattgaaatcgcaacagaacacccttaacaatcaagagtacctctg
ctcaggctcaggctgcacttcagcctgtgtcacccgggacttgttcccag
aagcagaactgacctacaatttgggcttcatacaggaagaaagagcccat
gttaccaagatgcacaaattcagaacgtggatacctcatttgttgtcact
aggaaagttttcagttagcgtcttttccctttcccagttcaacaaataaa
atgcttccattctgcactctctctcctctcttgtcacctggcctgtttca
gacactgcgaaataataaataggtagataaaataaaaaattaaagcaaat
aaaaatacaattaaattaaatttttaaaggtcccagatttcacatttacc
caagcagtaaagaggtctgccaccctacagcaacttcaggcatagcgtca
gtattcgaactaacataggcgaccccagcttgataaatgtcgt

gaattcaaaagcttccttattggtgacaaaccaggctggagaagccactg
tggtcacagcgtctggactgcagctgcacaactgagggggacacagagaa
gactgggtccagattcaggaatgggtcgagaggtggccaggcccagacag
gtaaacaagggcacaggtggatgacaattgagtaaactgtgtcaagagga
gggactgaaggccaggcatggtgacacacacctttaaccccagcacttgg
gagacagagacaggtggatctctgagagttagagagcagcctggtcagca
tagcaagttctgtgacacccaggagacacatagagaccgtgtctttaaag
ggggaggggactgagtggcactggggccctgagacagccaggagtcctct
ccctatcatccttgctacatactgtagacacttgggagtcagatgacagg
atgggctgttgtcatcacagtgtgaagtgtctaccttttcatgggatcta
gatgaggaagttatacccttcctctctttgagggtgagcctggcaagtcc
ttgggcctgtttcctgacaggatttcaatgctcccatgtgtctcagctca
ccataaaaaatttatattaaagcactctttatttaagacctactttgttt
gtacacacacacacacacacacacacacacacacacacaggtatcccagg
aggccacaagagggcataagataccctggaactacagctgtagccagtta
tctacctgatgtgggagctgatatctgaatcagtgtgctccaagagcagt
gaatgttcttaaccactgagccatctctccaaccccgtagtgtggcattc
tttctactcccaggaataaagtcactcgttggtctgtgttgcctggtgga
gccacatagatggcatggtttacacgtgtttctgaggctgcagtcatcct
ctccctcaaaaatgggctcaagcactccttgtagaatgagtctctcaaag
caaggcaagtcaaaaacaacttaacaacaaataaactaacaaaaaaaaca
ttttacacattatggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65673824_65674980
seq2: B6Ng01-342B15.b_47_1189

seq1  GAATTCCTTGCCACGGCAGCCCAGTTCCTGTTACCTTGGCAGAAGTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGCCACGGCAGCCCAGTTCCTGTTACCTTGGCAGAAGTCAAG  50

seq1  GATTACTTTCCTCTCATTGATGGAACAGTTAGTCATGGATGAGGCATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTTTCCTCTCATTGATGGAACAGTTAGTCATGGATGAGGCATATT  100

seq1  GGAAGCTTCCAAATCTTGCCTCTCCCTCTCACGCACCCTACATATCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTTCCAAATCTTGCCTCTCCCTCTCACGCACCCTACATATCCCCA  150

seq1  CCCTAGTCCTTACTCTGATCTAGGAAATCTTAGAAACGACATATTAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTCCTTACTCTGATCTAGGAAATCTTAGAAACGACATATTAAGTG  200

seq1  AAGATTTTCCAGGGTAACCTTCCTTTCTGGCGAAGTTTTTGGCGTTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTCCAGGGTAACCTTCCTTTCTGGCGAAGTTTTTGGCGTTTGTG  250

seq1  ACATTTGTATGTATACACCCCCATAATCCTTAGACGAAAAACCGTTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTATGTATACACCCCCATAATCCTTAGACGAAAAACCGTTAAAT  300

seq1  GCTCACATAAGCAAGTCTTCAGAAGACGAATCTCTTGTACCTCATTTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACATAAGCAAGTCTTCAGAAGACGAATCTCTTGTACCTCATTTAAC  350

seq1  TTTTAAGATTATTCTCAATGTCTCTTTTTCCAGATATTTTAGGATTTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGATTATTCTCAATGTCTCTTTTTCCAGATATTTTAGGATTTAGG  400

seq1  AGGAAAATGAAATTAGTTGAAACAAATCAAGGTAAGCTGGGTGATGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATGAAATTAGTTGAAACAAATCAAGGTAAGCTGGGTGATGAGAA  450

seq1  ATGAATTGATGTCTGCAAAGATTTCCCGTGCTGCTCACAATCTCTCTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTGATGTCTGCAAAGATTTCCCGTGCTGCTCACAATCTCTCTAGA  500

seq1  GTGCCTCTCCTCTAAGGTGTAGGAAGCTCTGCTCCTTATCTGTTGACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCTCCTCTAAGGTGTAGGAAGCTCTGCTCCTTATCTGTTGACAGA  550

seq1  AAACACAGGCTGGGGTCCATTCTGCCCAGAGCAGCAACATTCCTGGGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGGCTGGGGTCCATTCTGCCCAGAGCAGCAACATTCCTGGGACC  600

seq1  TCATCCTTTTTCATACTTACCATGGGGGTAAAAAGCTCTGTATAAAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTTTTTCATACTTACCATGGGGGTAAAAAGCTCTGTATAAAGATG  650

seq1  GAGTAATTGAAATCGCAACAGAACACCCTTAACAATCAAGAGTACCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATTGAAATCGCAACAGAACACCCTTAACAATCAAGAGTACCTCTG  700

seq1  CTCAGGCTCAGGCTGCACTTCAGCCTGTGTCACCCGGGACTTGTTCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTCAGGCTGCACTTCAGCCTGTGTCACCCGGGACTTGTTCCCAG  750

seq1  AAGCAGAACTGACCTACAATTTGGGCTTCATACAGGAAGAAAGAGCCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAACTGACCTACAATTTGGGCTTCATACAGGAAGAAAGAGCCCAT  800

seq1  GTTACCAAGATGCACAAATTCAGAACGTGGATACCTCATTTGTTGTCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCAAGATGCACAAATTCAGAACGTGGATACCTCATTTGTTGTCACT  850

seq1  AGGAAAGTTTTCAGTTAGCGTCTTTTCCCTTTCCCAGTTCAACAAATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGTTTTCAGTTAGCGTCTTTTCCCTTTCCCAGTTCAACAAATAAA  900

seq1  ATGCTTCCATTCTGCACTCTCTCTCCTCTCTTGTCACCTGGCCTGTTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCCATTCTGCACTCTCTCTCCTCTCTTGTCACCTGGCCTGTTTCA  950

seq1  GACACTGCGAAATAAATAAATAGGTAGATAAAAATAAAAAATAAAAGCAA  1000
      ||||||||||||| ||||||||||||||| |||||||||||| |||||||
seq2  GACACTGCGAAAT-AATAAATAGGTAGAT-AAAATAAAAAATTAAAGCAA  998

seq1  ATAAAAATACAATTAAATTAAATTTTTTAAAGGTTCCCAGATTTTCACAT  1050
      |||||||||||||||||||||| |||||||||| ||||||| ||||||||
seq2  ATAAAAATACAATTAAATTAAA-TTTTTAAAGG-TCCCAGA-TTTCACAT  1045

seq1  TTACCCCAAGCAGTAAAGAAGGGTCTGCCACCCTACAGGCAACTTTCAGG  1100
      ||| |||||||||||||||  |||||||||||||||| ||||| ||||  
seq2  TTA-CCCAAGCAGTAAAGA--GGTCTGCCACCCTACA-GCAAC-TTCA--  1088

seq1  GGCATAGCGTCAGGTTATCAGAACT-ACATA-GCGACCCCCAGCCTGGAT  1148
      |||||||||||||  |||  ||||| ||||| |||| |||||| || |||
seq2  GGCATAGCGTCAG--TATTCGAACTAACATAGGCGA-CCCCAG-CTTGAT  1134

seq1  AAATGTCGT  1157
      |||||||||
seq2  AAATGTCGT  1143


seq1: chr3_65797393_65798472
seq2: B6Ng01-342B15.g_70_1137 (reverse)

seq1  ACTCCATATTGTGTAAAATTGTTTTTTTTTTGTTTTATGTTTATTTGTTT  50
      |||||||| |||||||||   | |||||||||||    ||||||||| ||
seq2  ACTCCATAATGTGTAAAA---TGTTTTTTTTGTT---AGTTTATTTG-TT  43

seq1  GTTTAGTTTTGTTTTTGGACTTGCCTTGCTTTGAGAGACTCCATTCTACA  100
      ||| ||  |||||||| ||||||||||||||||||||||| |||||||||
seq2  GTTAAG--TTGTTTTT-GACTTGCCTTGCTTTGAGAGACT-CATTCTACA  89

seq1  AGGAGTGCTTGAGCCCATTTTTGAGGGAGAAGGATGACTGCAGCCTCAGA  150
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGGAGTGCTTGAGCCCATTTTTGAGGGAG-AGGATGACTGCAGCCTCAGA  138

seq1  AACACGTGTAAACCATGCCATCTATGTGGCTCCACCCAGGCAACACAGAC  200
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AACACGTGTAAACCATGCCATCTATGTGGCTCCA-CCAGGCAACACAGAC  187

seq1  CAACGAGTGAC-TTATTCCTGGGAGTAGAAAGAATGCCACACTACGGGGT  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAACGAGTGACTTTATTCCTGGGAGTAGAAAGAATGCCACACTACGGGGT  237

seq1  TGGAGAGATGGCTCAGTGGTTAAGAACATTCACTGCTCTTGGAGCACACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGATGGCTCAGTGGTTAAGAACATTCACTGCTCTTGGAGCACACT  287

seq1  GATTCAGATATCAGCTCCCACATCAGGTAGATAACTGGCTACAGCTGTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGATATCAGCTCCCACATCAGGTAGATAACTGGCTACAGCTGTAG  337

seq1  TTCCAGGGTATCTTATGCCCTCTTGTGGCCTCCTGGGATACCTGTGTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGGTATCTTATGCCCTCTTGTGGCCTCCTGGGATACCTGTGTGTG  387

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAAACAAAGTAGGTCTTAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAAACAAAGTAGGTCTTAAA  437

seq1  TAAAGAGTGCTTTAATATAAATTTTTTATGGTGAGCTGAGACACATGGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGTGCTTTAATATAAATTTTTTATGGTGAGCTGAGACACATGGGA  487

seq1  GCATTGAAATCCTGTCAGGAAACAGGCCCAAGGACTTGCCAGGCTCACCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGAAATCCTGTCAGGAAACAGGCCCAAGGACTTGCCAGGCTCACCC  537

seq1  TCAAAGAGAGGAAGGGTATAACTTCCTCATCTAGATCCCATGAAAAGGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAGAGGAAGGGTATAACTTCCTCATCTAGATCCCATGAAAAGGTA  587

seq1  GACACTTCACACTGTGATGACAACAGCCCATCCTGTCATCTGACTCCCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTCACACTGTGATGACAACAGCCCATCCTGTCATCTGACTCCCAA  637

seq1  GTGTCTACAGTATGTAGCAAGGATGATAGGGAGAGGACTCCTGGCTGTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTACAGTATGTAGCAAGGATGATAGGGAGAGGACTCCTGGCTGTCT  687

seq1  CAGGGCCCCAGTGCCACTCAGTCCCCTCCCCCTTTAAAGACACGGTCTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCCCAGTGCCACTCAGTCCCCTCCCCCTTTAAAGACACGGTCTCT  737

seq1  ATGTGTCTCCTGGGTGTCACAGAACTTGCTATGCTGACCAGGCTGCTCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTCCTGGGTGTCACAGAACTTGCTATGCTGACCAGGCTGCTCTC  787

seq1  TAACTCTCAGAGATCCACCTGTCTCTGTCTCCCAAGTGCTGGGGTTAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTCAGAGATCCACCTGTCTCTGTCTCCCAAGTGCTGGGGTTAAAG  837

seq1  GTGTGTGTCACCATGCCTGGCCTTCAGTCCCTCCTCTTGACACAGTTTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTCACCATGCCTGGCCTTCAGTCCCTCCTCTTGACACAGTTTAC  887

seq1  TCAATTGTCATCCACCTGTGCCCTTGTTTACCTGTCTGGGCCTGGCCACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGTCATCCACCTGTGCCCTTGTTTACCTGTCTGGGCCTGGCCACC  937

seq1  TCTCGACCCATTCCTGAATCTGGACCCAGTCTTCTCTGTGTCCCCCTCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGACCCATTCCTGAATCTGGACCCAGTCTTCTCTGTGTCCCCCTCAG  987

seq1  TTGTGCAGCTGCAGTCCAGACGCTGTGACCACAGTGGCTTCTCCAGCCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAGCTGCAGTCCAGACGCTGTGACCACAGTGGCTTCTCCAGCCTG  1037

seq1  GTTTGTCACCAATAAGGAAGCTTTTGAATTC  1080
      |||||||||||||||||||||||||||||||
seq2  GTTTGTCACCAATAAGGAAGCTTTTGAATTC  1068


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