BAC Information

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BAC

Clone NameB6Ng01-342C09
Chromosome3 (Build37)
Map Location 59,325,777 - 59,327,052
singlet/doubletsinglet
Overlap geneEG229330
Upstream geneD3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756
Downstream geneEG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342C09.bB6Ng01-342C09.g
ACCGA125316GA125317
length1,2531,210
definitionB6Ng01-342C09.b B6Ng01-342C09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaggtcatcatttacacttccaagtctaggctatccacatgtt
tatttaaaagtaacattttcctaatgaaagaatcttattttttaattaca
aagctgtaaatgaagaaatatgtgtgagccacagcctatactttctaatg
tatgtctgctaagaagtacatattacccaagtcaacattatatggacaac
actctgtcaatacacagcacttttttgaatatatgtgtgtgtatatatat
atatatgaacaacacacatatcagaaatatacttactgcaacttccgaag
gcaaacataccaccatgaatgaaaatcacagctggactctttctttccaa
cttcctctttggcaagtacagacgaacagggatgttattgaactctgtgt
caatcactgtaacgttttcatctgaaactgcttatacaatgtaaagtgct
gatataattgaaaatattttttcatatttcatgagacctattttttcaaa
taattcagcctataaaagcaagacaaaaattttaacaattatacattttt
actttaatagcaacaaatacacatctgtaatcatagaaataatgtgataa
ttctttagaggactgatttaattttcaaactgtattttgtagcatggata
tctcagtgtgttcatctgcatcagaccaacacaagattgagttcatgaac
aagttatatgatgggggatgagtaaaatcccattcctccctggagacata
ctggcagctattggttattgaggaaggaggtataatttttttttaatatc
tgtgagtcatttacccttgttctagtaaataatctccctgaaattctcat
caatgaactaattaaactcattggatcacacaaaagactgaagatataaa
agtaggaggaaacatgtttagaaatggattccagtaggctcatgaggggt
gaaagaaggaacttcatcagtaaatgaacacctccttgtcaatgaacaac
aataaattaatgcctacctgcacatattataattgatacttgaactgaaa
acttttatccctactttcctgttattataagaccagaagtttgctattgc
aatctaccgaggagaatgcactacccagtcttggcccactgtgaacctgg
actacaatagccactgggagtgccaaacctgcctactatggcaataagat
tgatttatcgtaaacaaatctatgaattagccccactaccagatgaatct
tat
gaattctggagatgagaaatataagcaaacaaacagaaactatagatgga
agcaccaccaatagaatacaaaagatggaagaaagaatcttagggattca
ttcattggttaaagaaaatgttaaatgtaaaaaattactgtcacaaaaat
tcaagaaaatctgggacactatataaagaccaaacccaaggaaaacagga
ataaaaagacttccacaccaggcccaaaaaatattttccacaaaatcaca
gaagaaaatttacctagtctaaagaaggacaagatcataaaggtacaaga
agcttatagaataccaaatagattggaacataaaagaaaagtcctccccc
acatcaccccatagtaatcaaaacactaaatgtatagaacaaagaaaaaa
tattaaaagctgcaacagaaaaggccaagtaatatataaaagcagtccta
ctagaattatacttaactttataacggagactctaaaagtcagaagggcc
tggatagatgtcttgcagcctctaagaaaccacagatgccagcccagact
aatatacccagcaaaactttcaatcactaaagactgagaaaacaagatat
tccatgacaaaactaaatttaaacaatatctatccacaaatccagcccta
taaaggatattagaaggaaactctaatcagaggagcttaattccactcaa
gaaaacacgagaaataagtaatttcacaccaaaaaaaaacaaaaaacaaa
agaaggaagcacacacacacacacatacaccctagcaccaaaaacatcaa
aataacaggaattgacaaacattggtcattattatctctcagcattaatg
agctaaattcctcaataaaatgacaccggctaacagaaaaacaaatatgg
tatccactcacttataagttgatattacccataaataaagggtaaccatg
ctacaatccacagactcaaaaagctaacagaggctcaagtggaagactga
tctcctgagaggaaacagaatagacatcactatgatgggagaacggctga
tgggatggtgtctgtaacattcgcagcaaaaacacactcggaacaacaga
tcttcttgcaaagccttatggctactctcagaagacccgacctgaacggc
tgctattcccctgtgtgacgtcagcctctgaatagctgtctcaccccata
tcacccacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_59325777_59327052
seq2: B6Ng01-342C09.b_48_1300

seq1  GAATTCCAAGGTCATCATTTACACTTCCAAGTCTAGGCTATCCACATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGTCATCATTTACACTTCCAAGTCTAGGCTATCCACATGTT  50

seq1  TATTTAAAAGTAACATTTTCCTAATGAAAGAATCTTATTTTTTAATTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAAGTAACATTTTCCTAATGAAAGAATCTTATTTTTTAATTACA  100

seq1  AAGCTGTAAATGAAGAAATATGTGTGAGCCACAGCCTATACTTTCTAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTAAATGAAGAAATATGTGTGAGCCACAGCCTATACTTTCTAATG  150

seq1  TATGTCTGCTAAGAAGTACATATTACCCAAGTCAACATTATATGGACAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTGCTAAGAAGTACATATTACCCAAGTCAACATTATATGGACAAC  200

seq1  ACTCTGTCAATACACAGCACTTTTTTGAATATATGTGTGTGTATATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTCAATACACAGCACTTTTTTGAATATATGTGTGTGTATATATAT  250

seq1  ATATATGAACAACACACATATCAGAAATATACTTACTGCAACTTCCGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGAACAACACACATATCAGAAATATACTTACTGCAACTTCCGAAG  300

seq1  GCAAACATACCACCATGAATGAAAATCACAGCTGGACTCTTTCTTTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACATACCACCATGAATGAAAATCACAGCTGGACTCTTTCTTTCCAA  350

seq1  CTTCCTCTTTGGCAAGTACAGACGAACAGGGATGTTATTGAACTCTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTTTGGCAAGTACAGACGAACAGGGATGTTATTGAACTCTGTGT  400

seq1  CAATCACTGTAACGTTTTCATCTGAAACTGCTTATACAATGTAAAGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACTGTAACGTTTTCATCTGAAACTGCTTATACAATGTAAAGTGCT  450

seq1  GATATAATTGAAAATATTTTTTCATATTTCATGAGACCTATTTTTTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAATTGAAAATATTTTTTCATATTTCATGAGACCTATTTTTTCAAA  500

seq1  TAATTCAGCCTATAAAAGCAAGACAAAAATTTTAACAATTATACATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAGCCTATAAAAGCAAGACAAAAATTTTAACAATTATACATTTTT  550

seq1  ACTTTAATAGCAACAAATACACATCTGTAATCATAGAAATAATGTGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAATAGCAACAAATACACATCTGTAATCATAGAAATAATGTGATAA  600

seq1  TTCTTTAGAGGACTGATTTAATTTTCAAACTGTATTTTGTAGCATGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGAGGACTGATTTAATTTTCAAACTGTATTTTGTAGCATGGATA  650

seq1  TCTCAGTGTGTTCATCTGCATCAGACCAACACAAGATTGAGTTCATGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGTGTTCATCTGCATCAGACCAACACAAGATTGAGTTCATGAAC  700

seq1  AAGTTATATGATGGGGGATGAGTAAAATCCCATTCCTCCCTGGAGACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATATGATGGGGGATGAGTAAAATCCCATTCCTCCCTGGAGACATA  750

seq1  CTGGCAGCTATTGGTTATTGAGGAAGGAGGTATAATTTTTTTTTAATATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGCTATTGGTTATTGAGGAAGGAGGTATAATTTTTTTTTAATATC  800

seq1  TGTGAGTCATTTACCCTTGTTCTAGTAAATAATCTCCCTGAAATTCTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTCATTTACCCTTGTTCTAGTAAATAATCTCCCTGAAATTCTCAT  850

seq1  CAATGAACTAATTAAACTCATTGGATCACACAAAAGACTGAAGATATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAACTAATTAAACTCATTGGATCACACAAAAGACTGAAGATATAAA  900

seq1  AGTAGGAGGAAAACATGTTTAGAAAATGGATTCCAGTAGGCTCATGAAGG  950
      ||||||||| |||||||||||| ||||||||||||||||||||||| |||
seq2  AGTAGGAGG-AAACATGTTTAG-AAATGGATTCCAGTAGGCTCATG-AGG  947

seq1  GGTGAAAGAAGGAACTTCATCAGGTAAATGAACA-CTCC-TGTCAAATGA  998
      |||||||||||||||||||||| ||||||||||| |||| |||| |||||
seq2  GGTGAAAGAAGGAACTTCATCA-GTAAATGAACACCTCCTTGTC-AATGA  995

seq1  ACAAACAATAAATAAATGCCTACTTGCACATATTATAATTGATAC-TGAA  1047
      || |||||||||| ||||||||| ||||||||||||||||||||| ||||
seq2  AC-AACAATAAATTAATGCCTACCTGCACATATTATAATTGATACTTGAA  1044

seq1  CTGAAAAC-TTTATCCCTACTTTCCTGTTATTATAAGACCAGAAG-TTGC  1095
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  CTGAAAACTTTTATCCCTACTTTCCTGTTATTATAAGACCAGAAGTTTGC  1094

seq1  TA-TGCATACTACCAGAGGAGAATTGCCATCACCAGTCTTGCCCAACTGT  1144
      || ||||  ||||| |||||||| |||  |  ||||||||| || |||||
seq2  TATTGCAATCTACC-GAGGAGAA-TGCACTACCCAGTCTTGGCCCACTGT  1142

seq1  GAACCTTGTGAACTACAATAGCCACTGGGATGGCAAAACTTGCCTACTAT  1194
      |||||   || |||||||||||||||||||  || |||| ||||||||||
seq2  GAACC---TGGACTACAATAGCCACTGGGAGTGCCAAACCTGCCTACTAT  1189

seq1  TGCAATAGAGATTTGAATATTATGGGTTAAAAAAATCAAATTTTTATTGG  1244
       |||||| ||| ||||   |||| |  |||| ||||| |        || 
seq2  GGCAATA-AGA-TTGA--TTTATCG--TAAACAAATCTA--------TGA  1225

seq1  ATTTAAGCCCCACTACACAAGATGAAACTTAT  1276
      |||  |||||||||  || ||||||| |||||
seq2  ATT--AGCCCCACT--ACCAGATGAATCTTAT  1253