BAC Information

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BAC

Clone NameB6Ng01-342F01
Chromosome3 (Build37)
Map Location 104,923,081 - 105,076,011
singlet/doubletdoublet
Overlap genenone
Upstream geneMagi3, EG433634, LOC668622, Lrig2, Slc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik
Downstream gene1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342F01.bB6Ng01-342F01.g
ACCGA125437GA125438
length954818
definitionB6Ng01-342F01.b B6Ng01-342F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,075,064 - 105,076,011)(104,923,081 - 104,923,830)
sequence
gaattctccaggaagatatattgatccagtccaagtgacatcaatagacc
taggtaactgaataaagcttgcggagtttgccttaaaatatgtatgatgt
agtcttaggacaccacctggcagcttctccactccatccatcccccaccc
cctccgccacttcatcatgcctcacctcactcagctctaccctccagtcg
cacctgacacttctcagtcagttccaaaacatgaggatgtagtggtggga
atcaaaggtaaaactgacaggaagtggagggcgccaggcagttccattcc
acagtctgaaatggaccttgtcagtgtcctcaagggttcagggctctcac
ctctgccgccccactttccacaatgaagtcacccagtgacccatttccac
cactgatcggagagtgaatgtttgttttcccttccccttctgtttgtttc
ctcccccctggccacccaggaagcacagtgtggggactactgctacagac
ctcctccctgtaaagtggaagtaataacacagcatctacctcactggagc
cttgtaaggattaactgagataaaccacacaccgagtgcttagcctactc
ttgatacacagtattagtagtaaaatcagcagactctcctgagcactcag
tatgcattaactagcgcttatgttaatcagcctaatcctcatgaccaccc
agtgaggtaaatacaatcctcaagaccatttgcagatgctaaagcagaga
gaaaagatgcagctggccccaaaccctacagtgaataagccagcagagca
gagattggaacccgggtccatttgattccagactttaggttcttaacaga
tgcgtacagtactgtccggtgaagatttctcttttccattttctgcccac
ccgtctctatttgccaccatcactggggaatcccgtggtgacacccaagg
ttgg
gaattcacagactgtggcagcatgccagggcctacacaggtccaagccag
aaggggtctccatactgaaaggggaactgcacaaaacccctcaactctaa
cccagaacctttgccaattgataagtgttcactaaggaagaataagtttt
ctccaatggagtcacactgggcatacatgtacgggaggccccatgcccat
tagtagatggccaacataaatgagctcagtggtacttctgaagatgtttt
atctcataatgtttatttttggttttgggattttttgggttttttttgct
ttacttgtctcttgggttttttgtttgtttgtttgttttgttttcttctt
tttcttgttttcttggaggggatctgagaaagatctgagatgtaagaggg
aagactataatcaaaaggtactgcgtgaaaaagttattttcaataaaaaa
gattagtggctcatgaaatttctgtcacagtcattcaaatctgccatcat
agtgtaaacataggcatcgataatggatatataagtgagtgtggttcaat
aaagccttatttcattttattattttgtgtggtgcatgtgtgtatatgtg
tttatgtatgtgagtacatggtacatgcatgtgtgttcttgtggaagcca
gtgcacagaggtcaatgttgggtgtccccctctatcatctttccatctta
ctgttttacacaaggtctctcactgaaccttggagctcagttaaccgaat
catcatgacaagctagtcagcaagtcccagggatcctactgctgcttccc
tagacagttggggtgcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_105075064_105076011
seq2: B6Ng01-342F01.b_48_1001 (reverse)

seq1  CCAACCTTGTGTGTCACCACGGGATTTCCCAGTGA-GGTGGCAGCTAGAG  49
      ||||||||| |||||||||||||||| |||||||| |||||||  |||||
seq2  CCAACCTTGGGTGTCACCACGGGATTCCCCAGTGATGGTGGCAAATAGAG  50

seq1  ACGGGTGGGCAG-AAATGGAAAAGCG-AAGCAGCACTGGACACTACTGGA  97
      |||||||||||| ||||||||||| | || |  ||| ||||| ||||| |
seq2  ACGGGTGGGCAGAAAATGGAAAAGAGAAATCTTCACCGGACAGTACTGTA  100

seq1  CGCAACTGTTAAGAACCT-AAGTCTGGAATCAAATGGACCCGGGTTCCAA  146
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  CGCATCTGTTAAGAACCTAAAGTCTGGAATCAAATGGACCCGGGTTCCAA  150

seq1  TCTCTGCTCTGCT-GCTTATTCACTGTA-GGTTTGGGGCCAGCTGCATCT  194
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  TCTCTGCTCTGCTGGCTTATTCACTGTAGGGTTTGGGGCCAGCTGCATCT  200

seq1  TTTCTCTCTGCCTTAGCATCTGCAAATGGTCCTGAGGATTGTATTTACCT  244
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  TTTCTCTCTGCTTTAGCATCTGCAAATGGTCTTGAGGATTGTATTTACCT  250

seq1  CACTGGGTGGTCATGAGGATTAGGCTGATTAACATAAGCGCTAGTTAATG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGTGGTCATGAGGATTAGGCTGATTAACATAAGCGCTAGTTAATG  300

seq1  CATACTGAGTGCTCAGGAGAGTCTGCTGATTTTACTACTAATGCTGTGTA  344
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATACTGAGTGCTCAGGAGAGTCTGCTGATTTTACTACTAATACTGTGTA  350

seq1  TCAAGAGTAGGCTAAGCACTCGGTGTGTGGTTTATCTCAGTTAATCCTTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGTAGGCTAAGCACTCGGTGTGTGGTTTATCTCAGTTAATCCTTA  400

seq1  CAAGGCTCCAGTGAGGTAGATGCTGTGTTATTACTTCCACTTTACAGGGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTCCAGTGAGGTAGATGCTGTGTTATTACTTCCACTTTACAGGGA  450

seq1  GGAGGTCTGTAGCAGTAGTCCCCACACTGTGCTTCCTGGGTGGCCAGGGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCTGTAGCAGTAGTCCCCACACTGTGCTTCCTGGGTGGCCAGGGG  500

seq1  GGAGGAAACAAACAGAAGGGGAAGGGAAAACAAACATTCACTCTCCGATC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAACAAACAGAAGGGGAAGGGAAAACAAACATTCACTCTCCGATC  550

seq1  AGTGGTGGAAATGGGTCACTGGGTGACTTCATTGTGGAAAGTGGGGCGGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGGAAATGGGTCACTGGGTGACTTCATTGTGGAAAGTGGGGCGGC  600

seq1  AGAGGTGAGAGCCCTGAACCCTTGAGGACACTGACAAGGTCCATTTCAGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGAGAGCCCTGAACCCTTGAGGACACTGACAAGGTCCATTTCAGA  650

seq1  CTGTGGAATGGAACTGCCTGGCGCCCTCCACTTCCTGTCAGTTTTACCTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAATGGAACTGCCTGGCGCCCTCCACTTCCTGTCAGTTTTACCTT  700

seq1  TGATTCCCACCACTACATCCTCATGTTTTGGAACTGACTGAGAAGTGTCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCCACCACTACATCCTCATGTTTTGGAACTGACTGAGAAGTGTCA  750

seq1  GGTGCGACTGGAGGGTAGAGCTGAGTGAGGTGAGGCATGATGAAGTGGCG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCGACTGGAGGGTAGAGCTGAGTGAGGTGAGGCATGATGAAGTGGCG  800

seq1  GAGGGGGTGGGGGATGGATGGAGTGGAGAAGCTGCCAGGTGGTGTCCTAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGTGGGGGATGGATGGAGTGGAGAAGCTGCCAGGTGGTGTCCTAA  850

seq1  GACTACATCATACATATTTTAAGGCAAACTCCGCAAGCTTTATTCAGTTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACATCATACATATTTTAAGGCAAACTCCGCAAGCTTTATTCAGTTA  900

seq1  CCTAGGTCTATTGATGTCACTTGGACTGGATCAATATATCTTCCTGGAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTCTATTGATGTCACTTGGACTGGATCAATATATCTTCCTGGAGA  950

seq1  ATTC  948
      ||||
seq2  ATTC  954

seq1: chr3_104923081_104923830
seq2: B6Ng01-342F01.g_134_886

seq1  TGAAAGGGGAACTGCACAAAACCCCTCAACTCTAACCCAGAACCTTTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGGGAACTGCACAAAACCCCTCAACTCTAACCCAGAACCTTTGCC  50

seq1  AATTGATAAGTGTTCACTAAGGAAGAATAAGTTTTCTCCAATGGAGTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATAAGTGTTCACTAAGGAAGAATAAGTTTTCTCCAATGGAGTCAC  100

seq1  ACTGGGCATACATGTACGGGAGGCCCCATGCCCATTAGTAGATGGCCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCATACATGTACGGGAGGCCCCATGCCCATTAGTAGATGGCCAAC  150

seq1  ATAAATGAGCTCAGTGGTACTTCTGAAGATGTTTTATCTCATAATGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAGCTCAGTGGTACTTCTGAAGATGTTTTATCTCATAATGTTTA  200

seq1  TTTTTGGTTTTGGGATTTTTTGGGTTTTTTTTGCTTTACTTGTCTCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTTTTGGGATTTTTTGGGTTTTTTTTGCTTTACTTGTCTCTTGG  250

seq1  GTTTTTTGTTTGTTTGTTTGTTTTGTTTTCTTCTTTTTCTTGTTTTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTTGTTTGTTTGTTTTGTTTTCTTCTTTTTCTTGTTTTCTTG  300

seq1  GAGGGGATCTGAGAAAGATCTGAGATGTAAGAGGGAAGACTATAATCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGATCTGAGAAAGATCTGAGATGTAAGAGGGAAGACTATAATCAAA  350

seq1  AGGTACTGCGTGAAAAAGTTATTTTCAATAAAAAAGATTAGTGGCTCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTGCGTGAAAAAGTTATTTTCAATAAAAAAGATTAGTGGCTCATG  400

seq1  AAATTTCTGTCACAGTCATTCAAATCTGCCATCATAGTGTAAACATAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTGTCACAGTCATTCAAATCTGCCATCATAGTGTAAACATAGGC  450

seq1  ATCGATAATGGATATATAAGTGAGTGTGGTTCAATAAAGCCTTATTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATAATGGATATATAAGTGAGTGTGGTTCAATAAAGCCTTATTTCAT  500

seq1  TTTATTATTTTGTGTGGTGCATGTGTGTATATGTGTTTATGTATGTGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATTTTGTGTGGTGCATGTGTGTATATGTGTTTATGTATGTGAGT  550

seq1  ACATGGTACATGCATGTGTGTTCTTGTGGAAGCCAGTGCACAGAGGTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTACATGCATGTGTGTTCTTGTGGAAGCCAGTGCACAGAGGTCAA  600

seq1  TGTTGGGTGT-CCCCTCTATCATC-TTCCATCTTACTGTTTTACACAAGG  648
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  TGTTGGGTGTCCCCCTCTATCATCTTTCCATCTTACTGTTTTACACAAGG  650

seq1  TCTCTCACTGAACCTT-GAGCTCAGTTAACCGAATCAGCATGACAAGCTA  697
      |||||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  TCTCTCACTGAACCTTGGAGCTCAGTTAACCGAATCATCATGACAAGCTA  700

seq1  GTCAGCAAGTCCCAGGGATCCTACTGCTGCTTCCCCAGCACAGTT-GGGT  746
      ||||||||||||||||||||||||||||||||||| || |||||| ||||
seq2  GTCAGCAAGTCCCAGGGATCCTACTGCTGCTTCCCTAG-ACAGTTGGGGT  749

seq1  GCCA  750
      ||||
seq2  GCCA  753