BAC Information

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BAC

Clone NameB6Ng01-342F15
Chromosome3 (Build37)
Map Location 13,683,042 - 13,715,027
singlet/doubletdoublet
Overlap gene0710005M24Rik
Upstream geneEG668033, LOC668037, LOC100039823, LOC100039861, LOC100041679, LOC100041667
Downstream geneLOC100039882, EG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342F15.bB6Ng01-342F15.g
ACCGA125464GA125465
length1,1071,147
definitionB6Ng01-342F15.b B6Ng01-342F15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,683,042 - 13,684,151)(13,713,868 - 13,715,027)
sequence
gaattccagcctttgaaagcagactgattgagagttggaaatttaatcaa
caagaaccaatttaaaagtgccgagttgcaagaaaatctagagaattcta
actttatatataaagtctttttctgctccacaaaaacctcaactttcttt
tggtttgtaagtttaaaatatgctgatgaatgaccactgtagaaccgttt
attacagagcaggcgtaactcatatttttcagttctcaaaggggaaatgt
ctggataagttgtagggattcttgaggttattatagaaaaattgtcttct
ctgtcaggtcttccactgaagaccaagtaatgttaaagtgtatatgtata
tatatattcttatagggtagtgtttgttctttgaatatttccacggggtc
tctatataaacttttgtcggatgacttaaactgaattttagttggtctgc
atggaacggtttcttttaggttaagtacatttcaggtcaaacaaaaattt
taaaatttaaaaacacatgctttacatttggagctctacaaaatgtacag
ctagtaagaaaacatgctgagcagcctggaagaactgaggagtgacttga
gtgcacagagtcactaggaacctcactgcaggacatactccctttgtgct
atggccttcagagggctgctctctatttcttggtgctgaagtttatccaa
tagtgtactcacagcacattattccctcagtgaagctggactggtgggct
ttattatggagtttatactattgtaattgtaatagcattgtgaaaataaa
ctgttgtatgatggaaatttttaatgtctcagtttcatatgatctccaat
atcatcaatatttgcacttactgttttcttagatagtgttaaaaccttgt
attcttgggcatggtgaaaataatagcagctggccatatgatggtcaaat
gaatagtcttgaatgggaattagttacctgttatattaactattttcctt
gtctgcgtggacacttgtacagccacaatttatcttattggttctattat
ttaagatcgaaggtgctggtgtttcaggatttcacattagcatcattttc
aaggctg

gaattctttgaacaggcatcacaaagaccagagaaccaaaggaatttaaa
ctgaaatcttataaaaatgtttttttctcagaatagttttataaagaatc
taaaaacaaatgtagtcttcaaaaaaaccacaataaacagaacaaaacaa
aaacagcaagttacatgtttattttgaatagaaactatctagtgggttgc
ttactaacttaatctcagacagaggataacaatttacagaaaaatctttc
catttctaaactctcctgagaaacactgcagctcactggttctttcacag
tgcatcttactatgtggtgaaggtggtcttaggtgcagagtctcctttgt
taagtaaacttctgtcttctcttgaaacaaagaaaagctgcatttgcact
tgaatttaacaagagaatacaaaaataaaacacaactccagaatgcaatg
aatattccagagccaattacatagtttttaaattaccttcaaatataact
aatgtttgtgactgaacaggcaaaaaggcttctgagtcagactgtattga
aattcttgctattgtgactgagaaatttttatcagtctgagctctccatt
tctcactgtataataaagaaaaggttatttgaggattgaactatcctcat
gatcgaggtagctagaaaactggctggcacaggaaggcatctgacaaatt
tgtttttacctttcaatggcaaatttatcaaggacaggtaaatatctgca
ttatgtatctccatagggatcagaatgattcatttagcaacccttcttag
aaatctatatttaaatctcatgttgctctttcctgcttattttagagaaa
atgttaatattcacggaaaagggaaatgtctgtaagatgataaaagtttt
gagcatatttcatgatataacagtatatagggcagtatataggtgtttgt
gcaatggcagttctgaccacaggccctgagctcatttgcttataaattaa
aggttcattttaaattgtgatgagaattaagaaaatttagaagctaacat
ccacagatacactcccctacaccacacttaggccttctagtctctagact
caatattttttgatgctacagtgtgtcatccagcttcattgcataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_13683042_13684151
seq2: B6Ng01-342F15.b_47_1153

seq1  GAATTCCAGCCTTTGAAAGCAGACTGATTGAGAGTTGGAAATTTAATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCTTTGAAAGCAGACTGATTGAGAGTTGGAAATTTAATCAA  50

seq1  CAAGAACCAATTTAAAAGTGCCGAGTTGCAAGAAAATCTAGAGAATTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACCAATTTAAAAGTGCCGAGTTGCAAGAAAATCTAGAGAATTCTA  100

seq1  ACTTTATATATAAAGTCTTTTTCTGCTCCACAAAAACCTCAACTTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATATATAAAGTCTTTTTCTGCTCCACAAAAACCTCAACTTTCTTT  150

seq1  TGGTTTGTAAGTTTAAAATATGCTGATGAATGACCACTGTAGAACCGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGTAAGTTTAAAATATGCTGATGAATGACCACTGTAGAACCGTTT  200

seq1  ATTACAGAGCAGGCGTAACTCATATTTTTCAGTTCTCAAAGGGGAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGAGCAGGCGTAACTCATATTTTTCAGTTCTCAAAGGGGAAATGT  250

seq1  CTGGATAAGTTGTAGGGATTCTTGAGGTTATTATAGAAAAATTGTCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATAAGTTGTAGGGATTCTTGAGGTTATTATAGAAAAATTGTCTTCT  300

seq1  CTGTCAGGTCTTCCACTGAAGACCAAGTAATGTTAAAGTGTATATGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGGTCTTCCACTGAAGACCAAGTAATGTTAAAGTGTATATGTATA  350

seq1  TATATATTCTTATAGGGTAGTGTTTGTTCTTTGAATATTTCCACGGGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTCTTATAGGGTAGTGTTTGTTCTTTGAATATTTCCACGGGGTC  400

seq1  TCTATATAAACTTTTGTCGGATGACTTAAACTGAATTTTAGTTGGTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATAAACTTTTGTCGGATGACTTAAACTGAATTTTAGTTGGTCTGC  450

seq1  ATGGAACGGTTTCTTTTAGGTTAAGTACATTTCAGGTCAAACAAAAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACGGTTTCTTTTAGGTTAAGTACATTTCAGGTCAAACAAAAATTT  500

seq1  TAAAATTTAAAAACACATGCTTTACATTTGGAGCTCTACAAAATGTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTAAAAACACATGCTTTACATTTGGAGCTCTACAAAATGTACAG  550

seq1  CTAGTAAGAAAACATGCTGAGCAGCCTGGAAGAACTGAGGAGTGACTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAGAAAACATGCTGAGCAGCCTGGAAGAACTGAGGAGTGACTTGA  600

seq1  GTGCACAGAGTCACTAGGAACCTCACTGCAGGACATACTCCCTTTGTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAGAGTCACTAGGAACCTCACTGCAGGACATACTCCCTTTGTGCT  650

seq1  ATGGCCTTCAGAGGGCTGCTCTCTATTTCTTGGTGCTGAAGTTTATCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTTCAGAGGGCTGCTCTCTATTTCTTGGTGCTGAAGTTTATCCAA  700

seq1  TAGTGTACTCACAGCACATTATTCCCTCAGTGAAGCTGGACTGGTGGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTACTCACAGCACATTATTCCCTCAGTGAAGCTGGACTGGTGGGCT  750

seq1  TTATTATGGAGTTTATACTATTGTAATTGTAATAGCATTGTGAAAAATAA  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTATTATGGAGTTTATACTATTGTAATTGTAATAGCATTGTG-AAAATAA  799

seq1  ACTGTTGTATGATGGAAATTTTTAATGTCTCAGGTTTCATATGATCTCCA  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACTGTTGTATGATGGAAATTTTTAATGTCTCA-GTTTCATATGATCTCCA  848

seq1  ATATCATCAATATTTGCACTTACTGTTTTCTTAGATAGTGTTAAAAACCT  900
      |||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  ATATCATCAATATTTGCACTTACTGTTTTCTTAGATAGTGTTAAAACCTT  898

seq1  GTATTC-TGGGCAT-GTGAAAATAAATAGCAGCTGGCCATATGA-GGTCA  947
      |||||| ||||||| |||||||| |||||||||||||||||||| |||||
seq2  GTATTCTTGGGCATGGTGAAAAT-AATAGCAGCTGGCCATATGATGGTCA  947

seq1  AATG-ATAGTCTTGAAT-GGAATTAGTTACCTGTTATATTTAACTATTTT  995
      |||| |||||||||||| |||||||||||||||||||| |||||||||||
seq2  AATGAATAGTCTTGAATGGGAATTAGTTACCTGTTATA-TTAACTATTTT  996

seq1  CC-TGTCTGCGTTGACACCTTGTACCAGCACAAATTTATCTTTATTGGTT  1044
      || ||||||||| |||| |||||| ||||   |||||||| |||||||||
seq2  CCTTGTCTGCGTGGACA-CTTGTA-CAGCCACAATTTATC-TTATTGGTT  1043

seq1  CCTATTATTTAAGATTCGAGGTGCT-GTGTATCCAGGATTTCCACATTAG  1093
       ||||||||||||||   ||||||| |||| | |||||||| ||||||||
seq2  -CTATTATTTAAGATCGAAGGTGCTGGTGT-TTCAGGATTT-CACATTAG  1090

seq1  CATCATTTTCAAGGCTG  1110
      |||||||||||||||||
seq2  CATCATTTTCAAGGCTG  1107


seq1: chr3_13713868_13715027
seq2: B6Ng01-342F15.g_66_1212 (reverse)

seq1  TTTATGCAAATGGAGCT-GATGACACACTGTAAGCATCCAAAAAATATTG  49
      ||||||| |||| |||| ||||||||||||| ||||| ||||||||||||
seq2  TTTATGC-AATGAAGCTGGATGACACACTGT-AGCAT-CAAAAAATATTG  47

seq1  TGATGTCTAGGAGGAACCTTAG-AGGCTTAAGTGTGTGTTTGGGGAGTGT  98
          ||||| |||  ||  ||| |||| ||||||||   | |||||||||
seq2  ---AGTCTA-GAG--AC--TAGAAGGCCTAAGTGTGGTGTAGGGGAGTGT  89

seq1  ATCTGTGGATGTTAGGCTTCTAAATTTTCTTAATTTCTCATCAACAATTT  148
      |||||||||||||| |||||||||||||||||| |||||||| |||||||
seq2  ATCTGTGGATGTTA-GCTTCTAAATTTTCTTAA-TTCTCATC-ACAATTT  136

seq1  AAAATGAACCTTTTAATTTTATAAGCAAATGAGCTCAAGGCCTGT-GTCA  197
      |||||||||||||  | |||||||||||||||||||| ||||||| ||||
seq2  AAAATGAACCTTT--AATTTATAAGCAAATGAGCTCAGGGCCTGTGGTCA  184

seq1  GAACTGCCATTTGCAC-AACACCTATATACTGCCCTATATACTGTTATAT  246
      ||||||||| |||||| |||||||||||||||||||||||||||||||||
seq2  GAACTGCCA-TTGCACAAACACCTATATACTGCCCTATATACTGTTATAT  233

seq1  CATG-AATATGCTCAAAACTTTTATCATCTTACAGACATTTTCCCTTTTC  295
      |||| ||||||||||||||||||||||||||||||||| |||||||||||
seq2  CATGAAATATGCTCAAAACTTTTATCATCTTACAGACA-TTTCCCTTTTC  282

seq1  CGTGAATATTAACATTTTCTCTAAAATAAGCAGGAAAGAGCAACATGAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAATATTAACATTTTCTCTAAAATAAGCAGGAAAGAGCAACATGAGA  332

seq1  TTTAAATATAGATTTCTAAGAAGGGTTGCTAAATGAATCATTCTGATCCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATAGATTTCTAAGAAGGGTTGCTAAATGAATCATTCTGATCCC  382

seq1  TATGGAGATACATAATGCAGATATTTACCTGTCCTTGATAAATTTGCCAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGATACATAATGCAGATATTTACCTGTCCTTGATAAATTTGCCAT  432

seq1  TGAAAGGTAAAAACAAATTTGTCAGATGCCTTCCTGTGCCAGCCAGTTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGTAAAAACAAATTTGTCAGATGCCTTCCTGTGCCAGCCAGTTTT  482

seq1  CTAGCTACCTCGATCATGAGGATAGTTCAATCCTCAAATAACCTTTTCTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTACCTCGATCATGAGGATAGTTCAATCCTCAAATAACCTTTTCTT  532

seq1  TATTATACAGTGAGAAATGGAGAGCTCAGACTGATAAAAATTTCTCAGTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATACAGTGAGAAATGGAGAGCTCAGACTGATAAAAATTTCTCAGTC  582

seq1  ACAATAGCAAGAATTTCAATACAGTCTGACTCAGAAGCCTTTTTGCCTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGCAAGAATTTCAATACAGTCTGACTCAGAAGCCTTTTTGCCTGT  632

seq1  TCAGTCACAAACATTAGTTATATTTGAAGGTAATTTAAAAACTATGTAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCACAAACATTAGTTATATTTGAAGGTAATTTAAAAACTATGTAAT  682

seq1  TGGCTCTGGAATATTCATTGCATTCTGGAGTTGTGTTTTATTTTTGTATT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGGAATATTCATTGCATTCTGGAGTTGTGTTTTATTTTTGTATT  732

seq1  CTCTTGTTAAATTCAAGTGCAAATGCAGCTTTTCTTTGTTTCAAGAGAAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTAAATTCAAGTGCAAATGCAGCTTTTCTTTGTTTCAAGAGAAG  782

seq1  ACAGAAGTTTACTTAACAAAGGAGACTCTGCACCTAAGACCACCTTCACC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGTTTACTTAACAAAGGAGACTCTGCACCTAAGACCACCTTCACC  832

seq1  ACATAGTAAGATGCACTGTGAAAGAACCAGTGAGCTGCAGTGTTTCTCAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTAAGATGCACTGTGAAAGAACCAGTGAGCTGCAGTGTTTCTCAG  882

seq1  GAGAGTTTAGAAATGGAAAGATTTTTCTGTAAATTGTTATCCTCTGTCTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTTAGAAATGGAAAGATTTTTCTGTAAATTGTTATCCTCTGTCTG  932

seq1  AGATTAAGTTAGTAAGCAACCCACTAGATAGTTTCTATTCAAAATAAACA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAGTTAGTAAGCAACCCACTAGATAGTTTCTATTCAAAATAAACA  982

seq1  TGTAACTTGCTGTTTTTGTTTTGTTCTGTTTATTGTGGTTTTTTTGAAGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTTGCTGTTTTTGTTTTGTTCTGTTTATTGTGGTTTTTTTGAAGA  1032

seq1  CTACATTTGTTTTTAGATTCTTTATAAAACTATTCTGAGAAAAAAACATT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTGTTTTTAGATTCTTTATAAAACTATTCTGAGAAAAAAACATT  1082

seq1  TTTATAAGATTTCAGTTTAAATTCCTTTGGTTCTCTGGTCTTTGTGATGC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGATTTCAGTTTAAATTCCTTTGGTTCTCTGGTCTTTGTGATGC  1132

seq1  CTGTTCAAAGAATTC  1160
      |||||||||||||||
seq2  CTGTTCAAAGAATTC  1147


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