BAC Information

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BAC

Clone NameB6Ng01-342H06
Chromosome3 (Build37)
Map Location 64,077,923 - 64,079,154
singlet/doubletsinglet
Overlap gene4930518C23Rik, EG637004
Upstream geneMme, Plch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, LOC380739
Downstream geneEG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342H06.bB6Ng01-342H06.g
ACCGA125536GA125537
length1,0001,224
definitionB6Ng01-342H06.b B6Ng01-342H06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaacatctttaccttcaggtgaggttgctcatggtggcaaggtag
ccatggggcagatattgccttttttatctacagacaaaatacttccatga
aaagcacacactatgtggaacagtccactaataaatctgacaggacaggg
taaacagtcctccacaatgctgctttacaaaggtttgtcacatgatccaa
ggccagaaggtaaaagacagtagcttcaatgttatgagaaatgagagggc
tgtcaaggtaatctactgtctctacaatttgtttaagtgtgagaaactat
gttgggtacttcctacactcaggtaatattcaattcattctcagatttct
gacgggattgaagatttactatagtcctttaaacaaacttaagttgttca
tcattaaagacatgatatagagtagaaagcatggttttcagttggtgtta
caggataaacataattcagggatagaactgtaattctttaagttaggaat
gatgggagagtaattcatctaattgacaaatatgaaggactaggttttaa
ttgtatatcatactttgtaatttacatgattatggttctgctcaatttat
gtctgaaagaaaagtcttttgttttttgtttttaattggacagaaaatgt
gagatgtagtgggtggttctgatgctttgatcaggaatctgtgtttactg
atgctgaaggtcctcacccccaagtagattttgatccatcaacaaagatg
ccagtatccaatggttgagcatgggttgggatactgtgagttgcataagt
aggatgcagagagagaatcagaggactaagagagaagaagggaacttttg
ttagcataggaaataaatccgaccagtctcatgagtttctggataagtaa
actggccactagcctgactgtacctgtggtagtatgggaggattaggagt
acccagtcttgagtatcaaggtgtgtgtgtgtgtctgtgatcctctgcgc

gaattcctttatgatgtacaccctagcaaggatccaaatgatgtcttgac
cattgaattctggcaaactgcttttaattgtacctggccaaacagcagtg
ttccttataacgtggatcacagagtgaatatgactggtaaagaagacagg
ttgtatgatatgtcagatcatctctgcactggaaaggagaagctgaaaga
tctgaaaaatacctatctggatacatcacagctaagaatcacaaacaatg
tcagacaagctgtgtatcttatggcttatggcttggaccgtttaatcaga
gttttaataaaagaatatagggaatatttactacatccaaagatactagc
tttcatgtcctataaggtatgttatttgacccaatgatatagtaggatgt
gaaatcaagtttttactccaatgttcataccactgatattgctgacttgc
ttccatatggttttatagcatcaaaccttgtctgggtgacttgattgttc
attttcagttctcatttcttactaatttactaggtttgtgattaatgata
acaaaccagtcccacaaaaaattactggggccttttacaaaatatgttct
tattcttcacggaaacgaaatgtaaatgtgtctaagaataaagcatgagg
cagtgcctctagtttcctcctttgttctgttcaccatatacaatatgtaa
gttgtaatctaagatcactacttggattccaaaacatcatcttcatgtta
gacaaaggacatttatgtcccttcagtttaggatgagtcctggatattgt
atacaatttgatatacactctagaacttttgtgttaagagtttgtcttat
ctatttaaatgaaataactagagagtgaggtcttcacacaatatagcaag
agccaaacaaaaggatggatgtcaggggttaaagattataactcttatct
gggacattcacatctactgtactggtccttgatccacttgtcaaataatt
cgtggtaaaacatgagcagtcttgcaagatggccttacccattcaattcc
tgctgttttttcattctcatttacaaatgataagaaacttaatgcatcct
cctctgaactataggcctcagaaggaagcccactaacatcactaatgtgt
tactctttcaattgccgctcattatcgtaatccttcgttaccccagtcaa
tgaaccagaggcccacattgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_64077923_64079154
seq2: B6Ng01-342H06.g_71_1294 (reverse)

seq1  CACCCAATGT-GGCCTCTGGTCAATTGACTGGGTGTAACAGAAGAGTATA  49
      |||||||||| ||||||||||  |||||||||| |||||  | || ||  
seq2  CACCCAATGTGGGCCTCTGGTTCATTGACTGGG-GTAACGAAGGATTA--  47

seq1  GGGATAATGAGCAGGCAA-TGAAGAAGTAACACATTAGTGATGTTAAGTG  98
        |||||||||| ||||| ||||  |||||||||||||||||||| ||||
seq2  -CGATAATGAGC-GGCAATTGAAAGAGTAACACATTAGTGATGTT-AGTG  94

seq1  GGCTTCC-TCTGGGGCTAACCAGTTCAGAGGAGGGATGCA-TAAGTTTCT  146
      ||||||| |||| |||  |  ||||||||||| ||||||| |||||||||
seq2  GGCTTCCTTCTGAGGCCTA-TAGTTCAGAGGA-GGATGCATTAAGTTTCT  142

seq1  TATCATTTGTAAATGGAAGGAATGGAAAAAACAAGCAGGAATTGAATGGG  196
      |||||||||||||||    |||| |||||||| |||||||||||||||||
seq2  TATCATTTGTAAATG---AGAAT-GAAAAAAC-AGCAGGAATTGAATGGG  187

seq1  TAAGGCCATCTTTGGCAAGACTGCTCATGTTTTA-CACGAATTATTTGAC  245
      ||||||||||||  |||||||||||||||||||| |||||||||||||||
seq2  TAAGGCCATCTT--GCAAGACTGCTCATGTTTTACCACGAATTATTTGAC  235

seq1  AAGT-GATCAAGGACCAGTACAGTAGATGTGAATGTCCCAGATAAGAGTT  294
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGATCAAGGACCAGTACAGTAGATGTGAATGTCCCAGATAAGAGTT  285

seq1  ATAATCTTTAACCCCTGACATCCATCCTTTTGTTTGGCTCTTGCTATATT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTTTAACCCCTGACATCCATCCTTTTGTTTGGCTCTTGCTATATT  335

seq1  GTGTGAAGACCTCACTCTCTAG-TATTTCATTTAAATAGATAAGACAAAC  393
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTGTGAAGACCTCACTCTCTAGTTATTTCATTTAAATAGATAAGACAAAC  385

seq1  TCTTAACACAAAAGTTCTAGAGTGTATATCAAATTGTATACAATATCCAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACACAAAAGTTCTAGAGTGTATATCAAATTGTATACAATATCCAG  435

seq1  GACTCATCCTAAACTGAAGGGACATAAATGTCCTTTGTCTAACATGAAGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATCCTAAACTGAAGGGACATAAATGTCCTTTGTCTAACATGAAGA  485

seq1  TGATGTTTTGGAATCCAAGTAGTGATCTTAGATTACAACTTACATATTGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTTGGAATCCAAGTAGTGATCTTAGATTACAACTTACATATTGT  535

seq1  ATATGGTGAACAGAACAAAGGAGGAAACTAGAGGCACTGCCTCATGCTTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTGAACAGAACAAAGGAGGAAACTAGAGGCACTGCCTCATGCTTT  585

seq1  ATTCTTAGACACATTTACATTTCGTTTCCGTGAAGAATAAGAACATATTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAGACACATTTACATTTCGTTTCCGTGAAGAATAAGAACATATTT  635

seq1  TGTAAAAGGCCCCAGTAATTTTTTGTGGGACTGGTTTGTTATCATTAATC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAGGCCCCAGTAATTTTTTGTGGGACTGGTTTGTTATCATTAATC  685

seq1  ACAAACCTAGTAAATTAGTAAGAAATGAGAACTGAAAATGAACAATCAAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCTAGTAAATTAGTAAGAAATGAGAACTGAAAATGAACAATCAAG  735

seq1  TCACCCAGACAAGGTTTGATGCTATAAAACCATATGGAAGCAAGTCAGCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAGACAAGGTTTGATGCTATAAAACCATATGGAAGCAAGTCAGCA  785

seq1  ATATCAGTGGTATGAACATTGGAGTAAAAACTTGATTTCACATCCTACTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGTGGTATGAACATTGGAGTAAAAACTTGATTTCACATCCTACTA  835

seq1  TATCATTGGGTCAAATAACATACCTTATAGGACATGAAAGCTAGTATCTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTGGGTCAAATAACATACCTTATAGGACATGAAAGCTAGTATCTT  885

seq1  TGGATGTAGTAAATATTCCCTATATTCTTTTATTAAAACTCTGATTAAAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTAGTAAATATTCCCTATATTCTTTTATTAAAACTCTGATTAAAC  935

seq1  GGTCCAAGCCATAAGCCATAAGATACACAGCTTGTCTGACATTGTTTGTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAGCCATAAGCCATAAGATACACAGCTTGTCTGACATTGTTTGTG  985

seq1  ATTCTTAGCTGTGATGTATCCAGATAGGTATTTTTCAGATCTTTCAGCTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAGCTGTGATGTATCCAGATAGGTATTTTTCAGATCTTTCAGCTT  1035

seq1  CTCCTTTCCAGTGCAGAGATGATCTGACATATCATACAACCTGTCTTCTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCCAGTGCAGAGATGATCTGACATATCATACAACCTGTCTTCTT  1085

seq1  TACCAGTCATATTCACTCTGTGATCCACGTTATAAGGAACACTGCTGTTT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTCATATTCACTCTGTGATCCACGTTATAAGGAACACTGCTGTTT  1135

seq1  GGCCAGGTACAATTAAAAGCAGTTTGCCAGAATTCAATGGTCAAGACATC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGTACAATTAAAAGCAGTTTGCCAGAATTCAATGGTCAAGACATC  1185

seq1  ATTTGGATCCTTGCTAGGGTGTACATCATAAAGGAATTC  1232
      |||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGATCCTTGCTAGGGTGTACATCATAAAGGAATTC  1224