BAC Information

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BAC

Clone NameB6Ng01-342L14
Chromosome3 (Build37)
Map Location 114,656,097 - 114,798,349
singlet/doubletdoublet
Overlap geneOlfm3
Upstream geneCol11a1, LOC100043220
Downstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342L14.bB6Ng01-342L14.g
ACCGA125716GA125717
length1,2321,166
definitionB6Ng01-342L14.b B6Ng01-342L14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,656,097 - 114,657,345)(114,797,166 - 114,798,349)
sequence
gaattctctagagaagcagcctgcagacttttcctaaaaggaccagatac
tgaaggatttatgcgttgtagcaatagagtatctgtcacaggtcctcatt
tctaccactaggccagaagagaagagtaaaaatcaagtcacaattaagca
tggcttttgttccaacaaattttcatttcaaaaacaagaagagagctaag
tgtgcgtcacaggttaaacattgcccgttaaagtcccagaaaatggatgt
ccaatatttatatagtgttagaagcaaatgtgaaatgacattttctaata
gcacattaaaaagttcaaataaatatttttaggtctgtgctatgttatct
tactatgccctacaggctatcatctcagtgtgccgttaaagaaaacatta
ttgagacatttcacgcttgctttaaaaacagaagtctatagagatggctc
agtagttaaaagcccttgctgctctttcaggggacacagttataatactc
agtgcctacaaagtagctcataatcttctcccattccagttccagggagt
ataaatactccttggcctctaaagatacaaactgtgcacatcctgcacag
atctgcatacaggcaaaactcttacacacactaaacaaacaaacaaacaa
acaggcaaatgaataaatagacaagaactctcttggaaaattgtatgtat
ttaacattgactgttccctttgattatggctatacgtatgctaagaactg
acagccaccattggctggaaggaatcacgttaaattgtttttaaatattt
ttattaggtattttcctcatttacatttacattgctatcccaaaagtctc
ccgttaaattagattataaagtatattatgagatcagccaagctcctatg
gtaccagggctcagagtattttcagttccagaatattccaaagatatctt
caaacaagcataatactagaggcccctcctcacacaaagctttaaccaga
cctgtgaggtaatcaatgatgcagactaggaatgattactaactggtaaa
tacaataaatcatacatacctcaactgtttcttttatcaacatatgtctt
atactatgcacaagatttgagtgaaatggtttggcttaaatcgtattcta
cagttcatatgtatttttaccaagaaaggctcaattaattggattcactc
tcaacgtaagcaggctattctggttgttacca

gaattccagcatcatcacaaagacactcaattagtctgcatatttatcaa
gattcctaagtgattcctacaacggacttttaaagcttgagatagcccat
taatctgggaaggtttcctataagggatagacataatatgaatactgaat
ttggtcctttatcataagtaaaatacagtcacacatgcaaaggatgatat
aatctattaagaaaaatcatgaagaaatgtgcataaaagaattagaaaat
atgtattaggctgttaatattagatttctcaaggaggaaagaactatgtg
tatgtatatagtgattatataaatccattttgattaaattatatttttgt
ttgtattagtgaatataccaaagaatgagcccaaaaaacgtgataggatt
acaaataattctttcttttagatatgtgaatgtaacctcccccctcagcc
tgaaacctggctgaacagagcatccggggtggagcctgccaccctatcgt
tctgccactcccactactactgcctgccgcctagctgttccggagctatc
acgtggtcacctgaaactggactccaagaatgatttggcaggaatgggcc
ccttcctcttcttcataaaccagtgtctgggaatagtaaaattgaacctt
gagcagactagttgtcttggttccattctctctcgcgccgcctagctccc
tcttctcttccagattccaggatgcctcccaggctagaacccagacatgt
gagccgctggccggcccggccgcaacatgtgaatgttcactttcatttat
tattaaataaatatgtattattcagtaattagtgaaatgttactttcatt
gaaaaagtacacctgaactacaaatgaataatcttttcagagataggctt
ttccaccaagaaatattataaaggttaacacacagaaccagttagctcga
aagaagaatacattgacacattttcagactgtcatttcagaaaaagtcag
tggtattctggtacctgggctcgcctcgttcttactctgtcagactatca
tttttctttatctttctggtggttctgatctcagtcctccctatgtcata
ctgcttgttcaacataggtggcctggaatttaaagtaattttggaattcg
tctggcaatgtcagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_114656097_114657345
seq2: B6Ng01-342L14.b_49_1280

seq1  GAATTCTCTAGAGAAGCAGCCTGCAGACTTTTCCTAAAAGGACCAGATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGAGAAGCAGCCTGCAGACTTTTCCTAAAAGGACCAGATAC  50

seq1  TGAAGGATTTATGCGTTGTAGCAATAGAGTATCTGTCACAGGTCCTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGATTTATGCGTTGTAGCAATAGAGTATCTGTCACAGGTCCTCATT  100

seq1  TCTACCACTAGGCCAGAAGAGAAGAGTAAAAATCAAGTCACAATTAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCACTAGGCCAGAAGAGAAGAGTAAAAATCAAGTCACAATTAAGCA  150

seq1  TGGCTTTTGTTCCAACAAATTTTCATTTCAAAAACAAGAAGAGAGCTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTGTTCCAACAAATTTTCATTTCAAAAACAAGAAGAGAGCTAAG  200

seq1  TGTGCGTCACAGGTTAAACATTGCCCGTTAAAGTCCCAGAAAATGGATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGTCACAGGTTAAACATTGCCCGTTAAAGTCCCAGAAAATGGATGT  250

seq1  CCAATATTTATATAGTGTTAGAAGCAAATGTGAAATGACATTTTCTAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATTTATATAGTGTTAGAAGCAAATGTGAAATGACATTTTCTAATA  300

seq1  GCACATTAAAAAGTTCAAATAAATATTTTTAGGTCTGTGCTATGTTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTAAAAAGTTCAAATAAATATTTTTAGGTCTGTGCTATGTTATCT  350

seq1  TACTATGCCCTACAGGCTATCATCTCAGTGTGCCGTTAAAGAAAACATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGCCCTACAGGCTATCATCTCAGTGTGCCGTTAAAGAAAACATTA  400

seq1  TTGAGACATTTCACGCTTGCTTTAAAAACAGAAGTCTATAGAGATGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACATTTCACGCTTGCTTTAAAAACAGAAGTCTATAGAGATGGCTC  450

seq1  AGTAGTTAAAAGCCCTTGCTGCTCTTTCAGGGGACACAGTTATAATACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTAAAAGCCCTTGCTGCTCTTTCAGGGGACACAGTTATAATACTC  500

seq1  AGTGCCTACAAAGTAGCTCATAATCTTCTCCCATTCCAGTTCCAGGGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTACAAAGTAGCTCATAATCTTCTCCCATTCCAGTTCCAGGGAGT  550

seq1  ATAAATACTCCTTGGCCTCTAAAGATACAAACTGTGCACATCCTGCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATACTCCTTGGCCTCTAAAGATACAAACTGTGCACATCCTGCACAG  600

seq1  ATCTGCATACAGGCAAAACTCTTACACACACTAAACAAACAAACAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATACAGGCAAAACTCTTACACACACTAAACAAACAAACAAACAA  650

seq1  ACAGGCAAATGAATAAATAGACAAGAACTCTCTTGGAAAATTGTATGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAAATGAATAAATAGACAAGAACTCTCTTGGAAAATTGTATGTAT  700

seq1  TTAACATTGACTGTTCCCTTTGATTATGGCTATACGTATGCTAAGAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTGACTGTTCCCTTTGATTATGGCTATACGTATGCTAAGAACTG  750

seq1  ACAGCCACCATTGGCTGGAAGGAATCACGTTAAATTGTTTTTAAATATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCACCATTGGCTGGAAGGAATCACGTTAAATTGTTTTTAAATATTT  800

seq1  TTATTAGGTATTTTCCTCATTTACATTTACATTGCTATCCCAAAAGTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGGTATTTTCCTCATTTACATTTACATTGCTATCCCAAAAGTCTC  850

seq1  CCGTTAAATTAGATTATAAAGTATATTATGAGATCAGCCAAGCTCCTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTAAATTAGATTATAAAGTATATTATGAGATCAGCCAAGCTCCTATG  900

seq1  GTACCAGGGCTCAGAGTATTTTCAGTTCCAGAATATTCCAAAAGATATCT  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTACCAGGGCTCAGAGTATTTTCAGTTCCAGAATATTCC-AAAGATATCT  949

seq1  TCAAACAAGCATAATACTAGAGGCCCCTCCTCACACAAAGCTTTAACCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAAGCATAATACTAGAGGCCCCTCCTCACACAAAGCTTTAACCAG  999

seq1  ACCTGTGAGGTAATCAATGAATGCAAGACTAGGAATGATTACTAACTGGT  1050
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  ACCTGTGAGGTAATCAATG-ATGC-AGACTAGGAATGATTACTAACTGGT  1047

seq1  AAATAC-ATAAATCATACATACCTC-ACTGTTCTTTTTATTCAACATTAT  1098
      |||||| |||||||||||||||||| ||||||  ||||| |||||| |||
seq2  AAATACAATAAATCATACATACCTCAACTGTTTCTTTTA-TCAACA-TAT  1095

seq1  GTCTTTTATTATTTTATGCACAAAGATTTGAGTGAAAATGGGTTTGGCTG  1148
      |||     ||||  ||||||| |||||||||||||||   ||||||||| 
seq2  GTC-----TTATACTATGCAC-AAGATTTGAGTGAAA--TGGTTTGGCTT  1137

seq1  TATTCGTAATTCTACAGTTTTCCATATGTATTTTTATCCCACAGAGAGGC  1198
       | |||| |||||||||||   ||||||||||||||  ||| ||| ||||
seq2  AAATCGT-ATTCTACAGTT---CATATGTATTTTTA--CCA-AGAAAGGC  1180

seq1  TCAAAATTTATTGAGTTCA-TCTCAACGTAAAAACAGTTATTCTG---TT  1244
      ||  |||| ||||  |||| |||||||||||  |  | |||||||    |
seq2  TC--AATTAATTGGATTCACTCTCAACGTAAGCA-GGCTATTCTGGTTGT  1227

seq1  TACCA  1249
      |||||
seq2  TACCA  1232


seq1: chr3_114797166_114798349
seq2: B6Ng01-342L14.g_66_1231 (reverse)

seq1  TGCTGACATTGTCCAAGAAAGTATTCCAAAATTACTTTTAATACAAGCCA  50
      ||||||||||| |||   | | |||||||||||||||| ||| | || | 
seq2  TGCTGACATTG-CCA--GACGAATTCCAAAATTACTTTAAATTCCAGGCC  47

seq1  AACTATGTTTGAAACAGACAGTATGGACATAGGGGAGGACTGAAGATCAA  100
      | |||||||   ||||  |||||| |||||| |||||||||| |||||| 
seq2  ACCTATGTT--GAACAAGCAGTAT-GACATA-GGGAGGACTG-AGATCA-  91

seq1  GAAACCACAGGAAAAGGATAAAGAAAAATTGATTAGTCTGACAAGAGGTA  150
        ||||||  ||||  |||||||||||| ||| ||||||||| ||||   
seq2  -GAACCACCAGAAA--GATAAAGAAAAA-TGA-TAGTCTGAC-AGAG--T  133

seq1  AAGAACGGAGGCGAGCCCAGGTACCAGAATA-CACTGAC-TTTTCTGAAA  198
      |||||| |||||||||||||||||||||||| ||||||| ||||||| ||
seq2  AAGAAC-GAGGCGAGCCCAGGTACCAGAATACCACTGACTTTTTCTG-AA  181

seq1  ATGACAGTTCTGAAAAATGTGTCAATGTATTC-TCTTTCGAGCTAACTGG  247
      ||||||| |||| ||||||||||||||||||| |||||||||||||||||
seq2  ATGACAG-TCTG-AAAATGTGTCAATGTATTCTTCTTTCGAGCTAACTGG  229

seq1  TTCTGTGTGTTAACCTTTATAATATTTCTTGGTGGAAAAGCCTATCTCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTGTTAACCTTTATAATATTTCTTGGTGGAAAAGCCTATCTCTG  279

seq1  AAAAGATTATTCATTTGTAGTTCAGGTGTACTTTTTCAATGAAAGTAACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTATTCATTTGTAGTTCAGGTGTACTTTTTCAATGAAAGTAACA  329

seq1  TTTCACTAATTACTGAATAATACATATTTATTTAATAATAAATGAAAGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTAATTACTGAATAATACATATTTATTTAATAATAAATGAAAGTG  379

seq1  AACATTCACATGTTGCGGCCGGGCCGGCCAGCGGCTCACATGTCTGGGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCACATGTTGCGGCCGGGCCGGCCAGCGGCTCACATGTCTGGGTT  429

seq1  CTAGCCTGGGAGGCATCCTGGAATCTGGAAGAGAAGAGGGAGCTAGGCGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTGGGAGGCATCCTGGAATCTGGAAGAGAAGAGGGAGCTAGGCGG  479

seq1  CGCGAGAGAGAATGGAACCAAGACAACTAGTCTGCTCAAGGTTCAATTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGAGAGAGAATGGAACCAAGACAACTAGTCTGCTCAAGGTTCAATTTT  529

seq1  ACTATTCCCAGACACTGGTTTATGAAGAAGAGGAAGGGGCCCATTCCTGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCCCAGACACTGGTTTATGAAGAAGAGGAAGGGGCCCATTCCTGC  579

seq1  CAAATCATTCTTGGAGTCCAGTTTCAGGTGACCACGTGATAGCTCCGGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCATTCTTGGAGTCCAGTTTCAGGTGACCACGTGATAGCTCCGGAA  629

seq1  CAGCTAGGCGGCAGGCAGTAGTAGTGGGAGTGGCAGAACGATAGGGTGGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGGCGGCAGGCAGTAGTAGTGGGAGTGGCAGAACGATAGGGTGGC  679

seq1  AGGCTCCACCCCGGATGCTCTGTTCAGCCAGGTTTCAGGCTGAGGGGGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCACCCCGGATGCTCTGTTCAGCCAGGTTTCAGGCTGAGGGGGGA  729

seq1  GGTTACATTCACATATCTAAAAGAAAGAATTATTTGTAATCCTATCACGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACATTCACATATCTAAAAGAAAGAATTATTTGTAATCCTATCACGT  779

seq1  TTTTTGGGCTCATTCTTTGGTATATTCACTAATACAAACAAAAATATAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGGCTCATTCTTTGGTATATTCACTAATACAAACAAAAATATAAT  829

seq1  TTAATCAAAATGGATTTATATAATCACTATATACATACACATAGTTCTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAAAATGGATTTATATAATCACTATATACATACACATAGTTCTTT  879

seq1  CCTCCTTGAGAAATCTAATATTAACAGCCTAATACATATTTTCTAATTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTGAGAAATCTAATATTAACAGCCTAATACATATTTTCTAATTCT  929

seq1  TTTATGCACATTTCTTCATGATTTTTCTTAATAGATTATATCATCCTTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCACATTTCTTCATGATTTTTCTTAATAGATTATATCATCCTTTG  979

seq1  CATGTGTGACTGTATTTTACTTATGATAAAGGACCAAATTCAGTATTCAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGACTGTATTTTACTTATGATAAAGGACCAAATTCAGTATTCAT  1029

seq1  ATTATGTCTATCCCTTATAGGAAACCTTCCCAGATTAATGGGCTATCTCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTCTATCCCTTATAGGAAACCTTCCCAGATTAATGGGCTATCTCA  1079

seq1  AGCTTTAAAAGTCCGTTGTAGGAATCACTTAGGAATCTTGATAAATATGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAAAAGTCCGTTGTAGGAATCACTTAGGAATCTTGATAAATATGC  1129

seq1  AGACTAATTGAGTGTCTTTGTGATGATGCTGGAATTC  1184
      |||||||||||||||||||||||||||||||||||||
seq2  AGACTAATTGAGTGTCTTTGTGATGATGCTGGAATTC  1166


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