BAC Information

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BAC

Clone NameB6Ng01-343A09
Chromosome3 (Build37)8 (Build37)
Map Location 105,884,835 - 105,885,20776,944,212 - 76,945,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819
Downstream geneLOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343A09.bB6Ng01-343A09.g
ACCGA125919GA125920
length9341,152
definitionB6Ng01-343A09.b B6Ng01-343A09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,884,835 - 105,885,207)(76,944,212 - 76,945,363)
sequence
gaattccttttgtggttcagtctatttggagttctctaggcttcttgtat
tttcatgggcatctctctctttaggttagggaagttttcttctataattt
tgttgaagatattcactggccctttaagtctatatttattatctataggt
ttggtcttctcattgtgtcctggatttcttggatgttttgacttaggatc
tttatgcattttctttgattgttgtttccatgttttctatggaatcttct
gcaccttgattcactctttcatctcttgtattctgtcgctgatgctcgca
tccatggttcctgatttttttcctaggatttctatctccagagttgtctc
cttttgtgatttctttattgtttctcctttcatttttagatcctggatgg
ttttgttcaattctttcactcatttggtagtgttttcctgtaactctttt
taaggaatttttgtgtttcccctttaagggcttctagttgtttacctgtg
ttatcctgtatttttttaatggaattatttatttccttctcaaagtcctc
catcattatcatgagaagtgacttcagatccatatcttgcttttcttgtg
tgatggtgtatccaggacttgccatgttgggagagtttgggtctgatgat
gccaagtgaccttggtttctgttgcttctgttcttatctttgcctcctgc
catctgattacctcacatgcttgctaccctcaatatatctgagtggaccc
tgtccttcctataatcccagttgatttaggactcctcaaagtccagcttt
ctctgtgatcctgtgattctgggatcctgtgaacctgagattctgggtgt
gtcagagttcttggtagtcaggcttcctctgaggtcctgagttcctggtg
tgaccaagttcctggtatcctggaatcctaagat
gaattcaacacaatctagtaggtgctaaataaatactggttcttttcctg
tataaatatttaggcttcttatctagaagctaatgtaaactactgaagtg
aaggattcttggatgagagtcatgggctagatatgtggccttagacattt
tgctttgactttacctcagtttctccttctctaaaactgggctcataaaa
aaccaacattctgggataagaaagagaataaagaaggcaaccaatgccaa
tgtcttcatccaatgttttgtacagacaccctcagtaaacactggctctt
tttactggcacccttattacatcaaagaatcaaaagtgcttctgcctaaa
ttcatgactgcctctactttctatacctgcccatctagctcagcacctct
gtatacaggttttatggtaaatatatacacagcctttgccatgtgtgagc
actgagactttaaaacaactctttcatgccaggagttgtggtgcacacct
ttaatcccagcacttgggaggcagaggcaggcagatttctgagtttgagg
ccagcctggtctacatagtgagtgctaggataggactacacagagaaacc
ctgttcaaaaaaaacactcttttactctcagccctcaattatttatttat
ttgcagtttataggggtccaagggacaagagttatggaagggagaaagat
ccctaagggctgattttagtacttcaaaaccatctttactctcttcttca
acatcattagaattctgaagtagacaacacatatgcaggtgccttctttt
gcgtggcttttgacatgtagcagtaaagaaagcctgactccaagaattgc
aagtaaggaggtgaggctacacatcctctaataatcttcagctatttaag
tcaagttcttagatgcctaagattagcaaagtgaactccctgtctacacc
ttttagaggcaccatggaaaatacagaaagcttatagttgcaatgtgatt
aggagggtttcctactttcatctgatatactagtctttagacttagaaat
caagattaagagcacattgtatcttatgagccttctttatcaccctatat
tgatacagaaaaccagagtgctacgtgtcagtaactaactaaaaatcatt
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_105884835_105885207
seq2: B6Ng01-343A09.b_44_389 (reverse)

seq1  CAACGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCC  50
      |||| ||||||||||||| ||||||||| ||||| |||||||| ||||| 
seq2  CAACTCTGGAGATAGAAATCCTAGGAAAAAAATCAGGAACCATGGATGCG  50

seq1  AGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGA  100
      ||||||||| ||||||||||||||||| ||||| |||||  |||||||||
seq2  AGCATCAGCGACAGAATACAAGAGATGAAAGAGTGAATC-AAGGTGCAGA  99

seq1  AGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCA  150
      |||||||||||| ||||| |  ||||||||||||       |||||||||
seq2  AGATTCCATAGAAAACATGGAAACAACAATCAAA-------GAAAATGCA  142

seq1  AAAAGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGA  200
       ||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  TAAAGATCCTAAGTCAAAACATCCAAGAAATCCAGGACACAATGAGAAGA  192

seq1  CCAAACCTACGCATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAA  250
      |||||||||   ||||||            |||  ||       ||| ||
seq2  CCAAACCTATAGATAATA------------AATATAG-------ACTTAA  223

seq1  AGGACCAGCAAACATCTTCAACAAAATTATAGAAGAAAACTTCCCAAATC  300
      ||| ||||  || |||||||||||||||||||||||||||||||| || |
seq2  AGGGCCAGTGAATATCTTCAACAAAATTATAGAAGAAAACTTCCCTAACC  273

seq1  TAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAAT  350
      |||||| ||||||||||||||| |||||||||||||| ||||||||||||
seq2  TAAAGAGAGAGATGCCCATGAAAATACAAGAAGCCTAGAGAACTCCAAAT  323

seq1  AGACTGGACCAGAAAAGAAATTC  373
      |||||| |||| ||||| |||||
seq2  AGACTGAACCACAAAAGGAATTC  346

seq1: chr8_76944212_76945363
seq2: B6Ng01-343A09.g_68_1219

seq1  GAATTCAACACAATCTAGTAGGTGCTAAATAAATACTGGTTCTTTTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACAATCTAGTAGGTGCTAAATAAATACTGGTTCTTTTCCTG  50

seq1  TATAAATATTTAGGCTTCTTATCTAGAAGCTAATGTAAACTACTGAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATTTAGGCTTCTTATCTAGAAGCTAATGTAAACTACTGAAGTG  100

seq1  AAGGATTCTTGGATGAGAGTCATGGGCTAGATATGTGGCCTTAGACATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTCTTGGATGAGAGTCATGGGCTAGATATGTGGCCTTAGACATTT  150

seq1  TGCTTTGACTTTACCTCAGTTTCTCCTTCTCTAAAACTGGGCTCATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGACTTTACCTCAGTTTCTCCTTCTCTAAAACTGGGCTCATAAAA  200

seq1  AACCAACATTCTGGGATAAGAAAGAGAATAAAGAAGGCAACCAATGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACATTCTGGGATAAGAAAGAGAATAAAGAAGGCAACCAATGCCAA  250

seq1  TGTCTTCATCCAATGTTTTGTACAGACACCCTCAGTAAACACTGGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCATCCAATGTTTTGTACAGACACCCTCAGTAAACACTGGCTCTT  300

seq1  TTTACTGGCACCCTTATTACATCAAAGAATCAAAAGTGCTTCTGCCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGGCACCCTTATTACATCAAAGAATCAAAAGTGCTTCTGCCTAAA  350

seq1  TTCATGACTGCCTCTACTTTCTATACCTGCCCATCTAGCTCAGCACCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGACTGCCTCTACTTTCTATACCTGCCCATCTAGCTCAGCACCTCT  400

seq1  GTATACAGGTTTTATGGTAAATATATACACAGCCTTTGCCATGTGTGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACAGGTTTTATGGTAAATATATACACAGCCTTTGCCATGTGTGAGC  450

seq1  ACTGAGACTTTAAAACAACTCTTTCATGCCAGGAGTTGTGGTGCACACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGACTTTAAAACAACTCTTTCATGCCAGGAGTTGTGGTGCACACCT  500

seq1  TTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGG  550

seq1  CCAGCCTGGTCTACATAGTGAGTGCTAGGATAGGACTACACAGAGAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGTCTACATAGTGAGTGCTAGGATAGGACTACACAGAGAAACC  600

seq1  CTGTTCAAAAAAAACACTCTTTTACTCTCAGCCCTCAATTATTTATTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAAAAAAAACACTCTTTTACTCTCAGCCCTCAATTATTTATTTAT  650

seq1  TTGCAGTTTATAGGGGTCCAAGGGACAAGAGTTATGGAAGGGAGAAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTTATAGGGGTCCAAGGGACAAGAGTTATGGAAGGGAGAAAGAT  700

seq1  CCCTAAGGGCTGATTTTAGTACTTCAAAACCATCTTTACTCTCTTCTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGGGCTGATTTTAGTACTTCAAAACCATCTTTACTCTCTTCTTCA  750

seq1  ACATCATTAGAATTCTGAAGTAGACAACACATATGCAGGTGCCTTCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATTAGAATTCTGAAGTAGACAACACATATGCAGGTGCCTTCTTTT  800

seq1  GCGTGGCTTTTGACATGTAGCAGTAAAGAAAGCCTGACTCCAAGAATTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGCTTTTGACATGTAGCAGTAAAGAAAGCCTGACTCCAAGAATTGC  850

seq1  AAGTAAGGAGGTGAGGCTACACATCCTCTAATAATCTTCAGCTATTTAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGGAGGTGAGGCTACACATCCTCTAATAATCTTCAGCTATTTAAG  900

seq1  TCAAGTTCTTAGATGCCTAAAGATTAGCAAAGTGAACTCCCTGTCTACAC  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCAAGTTCTTAGATGCCT-AAGATTAGCAAAGTGAACTCCCTGTCTACAC  949

seq1  CTTTTAAGAGGCACCATGGAAAATACAGAAAGCTTATAGTTGCAATGTGA  1000
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTT-AGAGGCACCATGGAAAATACAGAAAGCTTATAGTTGCAATGTGA  998

seq1  TTAGGAGGGTTTCCTACTTTCCATCTGATATACTAGTCTTTAGACTTAGG  1050
      |||||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  TTAGGAGGGTTTCCTACTTT-CATCTGATATACTAGTCTTTAGACTTA-G  1046

seq1  AAAACAAAGAATTAAGAGCACA-TGTATCTATTGAG-CTTCTTTATCA-C  1097
      ||| |||   |||||||||||| |||||||  |||| ||||||||||| |
seq2  AAATCAA--GATTAAGAGCACATTGTATCTTATGAGCCTTCTTTATCACC  1094

seq1  CTATATT-ATACAGAAACCCAGAGGGTAACGTGTTCAGTAACAA---ATA  1143
      ||||||| ||||||||| |||||| |  ||||| |||||||| |   | |
seq2  CTATATTGATACAGAAAACCAGAGTGCTACGTG-TCAGTAACTAACTAAA  1143

seq1  AATCATTGG  1152
      |||||||||
seq2  AATCATTGG  1152