BAC Information

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BAC

Clone NameB6Ng01-343D15
Chromosome3 (Build37)
Map Location 78,666,430 - 78,667,617
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626461, LOC667526, LOC626479, LOC100041691
Downstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343D15.bB6Ng01-343D15.g
ACCGA126060GA126061
length1,1881,201
definitionB6Ng01-343D15.b B6Ng01-343D15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgtgaaaggggtttagtagggagtgtgtctatgagtccatgta
aggagatgggaaaataggacaaggaggtactaattatgatctcacagagg
gcaactctggggtatttctaaagggaagccccggaagctgttggttatga
cccagaattgctgagaccagacaacagggagctgttctcctccaggagga
cataaatttcaagatgcttcaacctatcagatttgggtacaaaggatcac
ttgagcccatgaaagtgcatgttcttgatgctggtactaaagcccacatg
aaagcctgtggacatgagtatggaaaaaagatagcgggaacacaaggaga
attctggtgaactctgtttcatccagactgcagacgggatgagtctgcac
tgtgcacactcattcatgatgcataagaaagttcctccatgtggtgaggc
actgtgggctggggatgcaaatctgtgtagaatgtgttcctttcagtatg
aacctctgcccttaggctagggaatgtctgatgtaataaacttgctgtca
acctactagatggtctctgtaacagctggtttcatatggaggattcagct
tttgtcatctgtctgattggctgtttgtcactttctacacagaccagcct
tgggcacaaggagtgtatgcttttgggcccatacatagtttaatcttggt
tgaaagagtatctaggtatatagtcttagtgcttgtggctcaaggacaga
ctatctgataactagcagaggaaatactcttcccacagggtgtcagttat
atctatagtgggtgctagctagtggacaataacatggagtaatgttcata
gaccaagattttccacttttgagtttccagagactgaatagaatcctttt
tatggctatacttgtcactatgaggtctagcattctcatgggcctaagtg
gtcatttataccaaacttaaactcacaaaagccacattttgatctggtgg
tcatcagaatgacacacaaaagagagcactcttctaacctggaagactac
aaatcactgggttctttctgctagtagcaagtgaacgtgtagaatagaac
ctcattattataaagtagtttggaatgattgtagttgggaatcacgtgtt
actttgtacctaatggatccaagagaaatgtgtatatt
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcggtcaaggaaaa
agccaaaagcggctggcaaaggccagcttgctgcttggcctcttggcagt
cggcttcaaggtcatagtgcacctccaccctatgctgagcccccgccctg
cgtagtgcatcagccctgcgcagagaggcaatggacagagaggcaatgca
cagactcgttcattccaaaggaggaacaaaggaaaatacaacaggcattt
ccggtctttgaaggagccgagggtgggcgtgtccacgctccggtagaata
cttacaaattaaagaaattgccgagtcggttcgtaaatacggaaccaatg
ctaattttaccttggtgcagttagacaggctcgctggcatggcactaact
cctgctgactggcaaacggttgtaaaagccgctctccctagtatgggcaa
atatatggaatggagagcgctttggcacgaagctgcacaagcgcaggccc
gagcaaacgcagctgctttgactccagagcagagagattggacttttgac
ttgttaacgggtcagggagcttattctgctgatcagacaaactaccattg
gggagcttatgcccaagtttcctccacggctattagggcctggaaggcgc
tctctcgagcaggtgaaaccactgggcagttaacaaagataatccaggga
cctcaggaatccttctcagattttgtggccagaatgacagaggcagcaga
gcgtatttttggagagtcagagcaagctgcgcctctgataaaacagctaa
tctatgagcaagccacaaaggagtgccgagcagccatagccccaagaaag
aacaaaggtttacaagactggctcagggtttgtcgggagcttgggggacc
tctcaccaatgcagcttagcggctgccatccttcaatcccaaaaatgctc
catgggcagaatgatcggaggacatgttttaattgcgaaagcctgggcat
ctagaaagattgcagagctcagataaacaggggactctcactctttgctc
taggtgtggcagggtatcatagaagcgacagtgtcgcctcttgagatagc
gactcttctccgcagtcagagagcacctcaggaagactcaccataggtgg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_78666430_78667617
seq2: B6Ng01-343D15.b_46_1233 (reverse)

seq1  AATATACACATTTCTCT--GATACATTTAGTTACAAAGTAACAC-TGATT  47
      |||||||||||||||||  ||| || |||| ||||||||||||| |||||
seq2  AATATACACATTTCTCTTGGATCCA-TTAGGTACAAAGTAACACGTGATT  49

seq1  CCAAACTACCATCAT--CCAACTACCTTTATAATAATGAGGTTCTA-TCT  94
      || |||||| |||||  | ||||| ||||||||||||||||||||| |||
seq2  CCCAACTACAATCATTCCAAACTA-CTTTATAATAATGAGGTTCTATTCT  98

seq1  ACACGTTCACTTGCTACTAGCAGGAAAGAA-CCAGTGATTTGTAGTCCTT  143
      |||||||||||||||||||||| ||||||| ||||||||||||||| |||
seq2  ACACGTTCACTTGCTACTAGCA-GAAAGAACCCAGTGATTTGTAGT-CTT  146

seq1  CCAGGTTAGAAGAGTTGCTCTCTTTTGTTGTGTCATTCTGATGACCACCA  193
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  CCAGGTTAGAAGAG-TGCTCTCTTTTG-TGTGTCATTCTGATGACCACCA  194

seq1  GATCAAAATGTGGCTTTTGTGAGTTTTAAGTTTTGGTATAAATGACCACT  243
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  GATCAAAATGTGGCTTTTGTGAG-TTTAAG-TTTGGTATAAATGACCACT  242

seq1  TAGG-CCATGAGAATGCTAGACCTCATAGTGACAAGTATAGCCATAAAAA  292
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCATGAGAATGCTAGACCTCATAGTGACAAGTATAGCCATAAAAA  292

seq1  GGATTCTATTCAGTCTCTGGAAACTCAAAAGTGGAAAATCTTGGTCTATG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTATTCAGTCTCTGGAAACTCAAAAGTGGAAAATCTTGGTCTATG  342

seq1  AACATTACTCCATGTTATTGTCCACTAGCTAGCACCCACTATAGATATAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTACTCCATGTTATTGTCCACTAGCTAGCACCCACTATAGATATAA  392

seq1  CTGACACCCTGTGGGAAGAGTATTTCCTCTGCTAGTTATCAGATAGTCTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACCCTGTGGGAAGAGTATTTCCTCTGCTAGTTATCAGATAGTCTG  442

seq1  TCCTTGAGCCACAAGCACTAAGACTATATACCTAGATACTCTTTCAACCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAGCCACAAGCACTAAGACTATATACCTAGATACTCTTTCAACCA  492

seq1  AGATTAAACTATGTATGGGCCCAAAAGCATACACTCCTTGTGCCCAAGGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAACTATGTATGGGCCCAAAAGCATACACTCCTTGTGCCCAAGGC  542

seq1  TGGTCTGTGTAGAAAGTGACAAACAGCCAATCAGACAGATGACAAAAGCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGTGTAGAAAGTGACAAACAGCCAATCAGACAGATGACAAAAGCT  592

seq1  GAATCCTCCATATGAAACCAGCTGTTACAGAGACCATCTAGTAGGTTGAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTCCATATGAAACCAGCTGTTACAGAGACCATCTAGTAGGTTGAC  642

seq1  AGCAAGTTTATTACATCAGACATTCCCTAGCCTAAGGGCAGAGGTTCATA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTTTATTACATCAGACATTCCCTAGCCTAAGGGCAGAGGTTCATA  692

seq1  CTGAAAGGAACACATTCTACACAGATTTGCATCCCCAGCCCACAGTGCCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGGAACACATTCTACACAGATTTGCATCCCCAGCCCACAGTGCCT  742

seq1  CACCACATGGAGGAACTTTCTTATGCATCATGAATGAGTGTGCACAGTGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACATGGAGGAACTTTCTTATGCATCATGAATGAGTGTGCACAGTGC  792

seq1  AGACTCATCCCGTCTGCAGTCTGGATGAAACAGAGTTCACCAGAATTCTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCATCCCGTCTGCAGTCTGGATGAAACAGAGTTCACCAGAATTCTC  842

seq1  CTTGTGTTCCCGCTATCTTTTTTCCATACTCATGTCCACAGGCTTTCATG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTTCCCGCTATCTTTTTTCCATACTCATGTCCACAGGCTTTCATG  892

seq1  TGGGCTTTAGTACCAGCATCAAGAACATGCACTTTCATGGGCTCAAGTGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTTAGTACCAGCATCAAGAACATGCACTTTCATGGGCTCAAGTGA  942

seq1  TCCTTTGTACCCAAATCTGATAGGTTGAAGCATCTTGAAATTTATGTCCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTACCCAAATCTGATAGGTTGAAGCATCTTGAAATTTATGTCCT  992

seq1  CCTGGAGGAGAACAGCTCCCTGTTGTCTGGTCTCAGCAATTCTGGGTCAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGAGAACAGCTCCCTGTTGTCTGGTCTCAGCAATTCTGGGTCAT  1042

seq1  AACCAACAGCTTCCGGGGCTTCCCTTTAGAAATACCCCAGAGTTGCCCTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACAGCTTCCGGGGCTTCCCTTTAGAAATACCCCAGAGTTGCCCTC  1092

seq1  TGTGAGATCATAATTAGTACCTCCTTGTCCTATTTTCCCATCTCCTTACA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGATCATAATTAGTACCTCCTTGTCCTATTTTCCCATCTCCTTACA  1142

seq1  TGGACTCATAGACACACTCCCTACTAAACCCCTTTCACATGAATTC  1188
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCATAGACACACTCCCTACTAAACCCCTTTCACATGAATTC  1188