BAC Information

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BAC

Clone NameB6Ng01-343L13
Chromosome3 (Build37)
Map Location 89,042,467 - 89,146,527
singlet/doubletdoublet
Overlap geneTrim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15
Upstream geneRhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1
Downstream geneDcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343L13.bB6Ng01-343L13.g
ACCGA126427GA126428
length1,199226
definitionB6Ng01-343L13.b B6Ng01-343L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,145,324 - 89,146,527)(89,042,467 - 89,042,692)
sequence
gaattcttgaaaagccggcagtggtggtacatgcctttagtcccagcact
tgggaggtagaggcaggtggatttccgagtttgaaggcagcctgctctct
agaacgaattctaggaaagtcagggatacacagataaatcctgtcttgaa
aaactaaagcaaaataaaacaaaaaggaaagccatacacagggaagtggt
cctatctgacagacgccctcattgcttgccttttgtccttctaggtctgt
gacagcagcgggcactgccgctgtgaagagggctgggcacctccagactg
catgacccagctcaaaggtagctagaggatgggcccggggtattgggaag
ctctgaccatctcctctctccttcgtccccttcctgacccctttactctc
tgtcccttgactctgtgactcctgaaggtgtctctggttcctcagcacct
cacttcctccctatccctgctcctctctcaggagagagttcttagccaga
cccaccctcagtttggacctctctccatagcaaccagctccctgaccaca
ggcctgctcctcagcctcctgttgttattggtcctcgtactacttggtgc
cagctactggcaccgtgcccgcctgcatcagcggctctgccagcttaagg
gatccagctgccaatataggtatgaacatcctgtccctgctgctgtttcc
ttcagtcagggacagtcctggagccctgattctaaaggccccaagacatt
cagtccttaccccttgcttctaagttccaactctcagatcctgagtttcc
tgactaccattcctacacacctacctgtcatctctgtgtatttcccttaa
cttcacccccagatacaagggccacttctctcagaccccaaggcagggga
aaggtagccttcttccaggatgctcaagcacacacaactaccctccaagg
gccaaagggttcaattctcccagatcagcaggtaggtggctagtcccatt
tttttctttggctttcttcatactcaggcacccaatcctgtcctctgaac
gaccaggacctcacagcgggcacagcagatgacagcactaagtaagtcct
tgcatgccagaaggaaagaggagttccaattaccttgttactcgggcctt
aaaggtagacttacgtccagactcagaaagaacttgggagatactcagt
agggtacattaggagagaaggaagcagtatgtgggtggccaggctgtgtg
ggagcacagggagaggaatagggaggggcccagcgggtggcagggccccc
aggacagggctgctgacttgcctggggtgctccggagcagagtccgcggt
ggccacagcctacaaagagagagggagaagcagcgctgagcgcggtagga
tggtgtgggtgtggcggggttggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89145324_89146527
seq2: B6Ng01-343L13.b_48_1246 (reverse)

seq1  ACTGAGTA-CT-CCAAG-TCTTTCTGAGTCTTGAACCCTTAGTGCTACCT  47
      |||||||| || ||||| ||||||||||||| ||  | | ||| ||||||
seq2  ACTGAGTATCTCCCAAGTTCTTTCTGAGTCTGGA--CGTAAGT-CTACCT  47

seq1  CTAAGGCCCGAGTTAACAA-GTAATGTGGACTCCTCTTTCC-TCTGGCAT  95
       ||||||||||| |||||| |||||  | |||||||||||| ||||||||
seq2  TTAAGGCCCGAG-TAACAAGGTAATTGGAACTCCTCTTTCCTTCTGGCAT  96

seq1  -CCAGGGCTTACCTTAGTGCCTGTCATCTGCTGTGCCCGCTGTGGAGGTC  144
       | ||| |||| ||||||| ||||||||||||||||||||||| ||||||
seq2  GCAAGGACTTA-CTTAGTG-CTGTCATCTGCTGTGCCCGCTGT-GAGGTC  143

seq1  CTGGTCGTTCAGGAGGACAGGATTGGGGTGCCCTGAGTATGAAGAAAGCC  194
      ||||||||||| |||||||||||| ||||| |||||||||||||||||||
seq2  CTGGTCGTTCA-GAGGACAGGATT-GGGTG-CCTGAGTATGAAGAAAGCC  190

seq1  AAAGAAAAAAATGGGACTAGCCACCTACCTGCTGATCTGGGAGAATTGAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAAATGGGACTAGCCACCTACCTGCTGATCTGGGAGAATTGAA  240

seq1  CCCTTTGGCCCTTGGAGGGTAGTTGTGTGTGCTTGAGCATCCTGGAAGAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGGCCCTTGGAGGGTAGTTGTGTGTGCTTGAGCATCCTGGAAGAA  290

seq1  GGCTACCTTTCCCCTGCCTTGGGGTCCTGAGAGAAGTGGCCCTTGTATCT  344
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGCTACCTTTCCCCTGCCTTGGGGT-CTGAGAGAAGTGGCCCTTGTATCT  339

seq1  GGGGGTGAAGTTAAGGGAAATACACAGAGATGACAGGTAGGTGTGTAGGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGAAGTTAAGGGAAATACACAGAGATGACAGGTAGGTGTGTAGGA  389

seq1  ATGGTAGTCAGGAAACTCAGGATCTGAGAGTTGGAACTTAGAAGCAAGGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGTCAGGAAACTCAGGATCTGAGAGTTGGAACTTAGAAGCAAGGG  439

seq1  GTAAGGACTGAATGTCTTGGGGCCTTTAGAATCAGGGCTCCAGGACTGTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGACTGAATGTCTTGGGGCCTTTAGAATCAGGGCTCCAGGACTGTC  489

seq1  CCTGACTGAAGGAAACAGCAGCAGGGACAGGATGTTCATACCTATATTGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTGAAGGAAACAGCAGCAGGGACAGGATGTTCATACCTATATTGG  539

seq1  CAGCTGGATCCCTTAAGCTGGCAGAGCCGCTGATGCAGGCGGGCACGGTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGATCCCTTAAGCTGGCAGAGCCGCTGATGCAGGCGGGCACGGTG  589

seq1  CCAGTAGCTGGCACCAAGTAGTACGAGGACCAATAACAACAGGAGGCTGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGCTGGCACCAAGTAGTACGAGGACCAATAACAACAGGAGGCTGA  639

seq1  GGAGCAGGCCTGTGGTCAGGGAGCTGGTTGCTATGGAGAGAGGTCCAAAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGCCTGTGGTCAGGGAGCTGGTTGCTATGGAGAGAGGTCCAAAC  689

seq1  TGAGGGTGGGTCTGGCTAAGAACTCTCTCCTGAGAGAGGAGCAGGGATAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTGGGTCTGGCTAAGAACTCTCTCCTGAGAGAGGAGCAGGGATAG  739

seq1  GGAGGAAGTGAGGTGCTGAGGAACCAGAGACACCTTCAGGAGTCACAGAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGTGAGGTGCTGAGGAACCAGAGACACCTTCAGGAGTCACAGAG  789

seq1  TCAAGGGACAGAGAGTAAAGGGGTCAGGAAGGGGACGAAGGAGAGAGGAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGACAGAGAGTAAAGGGGTCAGGAAGGGGACGAAGGAGAGAGGAG  839

seq1  ATGGTCAGAGCTTCCCAATACCCCGGGCCCATCCTCTAGCTACCTTTGAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCAGAGCTTCCCAATACCCCGGGCCCATCCTCTAGCTACCTTTGAG  889

seq1  CTGGGTCATGCAGTCTGGAGGTGCCCAGCCCTCTTCACAGCGGCAGTGCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCATGCAGTCTGGAGGTGCCCAGCCCTCTTCACAGCGGCAGTGCC  939

seq1  CGCTGCTGTCACAGACCTAGAAGGACAAAAGGCAAGCAATGAGGGCGTCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCTGTCACAGACCTAGAAGGACAAAAGGCAAGCAATGAGGGCGTCT  989

seq1  GTCAGATAGGACCACTTCCCTGTGTATGGCTTTCCTTTTTGTTTTATTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATAGGACCACTTCCCTGTGTATGGCTTTCCTTTTTGTTTTATTTT  1039

seq1  GCTTTAGTTTTTCAAGACAGGATTTATCTGTGTATCCCTGACTTTCCTAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGTTTTTCAAGACAGGATTTATCTGTGTATCCCTGACTTTCCTAG  1089

seq1  AATTCGTTCTAGAGAGCAGGCTGCCTTCAAACTCGGAAATCCACCTGCCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCGTTCTAGAGAGCAGGCTGCCTTCAAACTCGGAAATCCACCTGCCT  1139

seq1  CTACCTCCCAAGTGCTGGGACTAAAGGCATGTACCACCACTGCCGGCTTT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCCCAAGTGCTGGGACTAAAGGCATGTACCACCACTGCCGGCTTT  1189

seq1  TCAAGAATTC  1204
      ||||||||||
seq2  TCAAGAATTC  1199

seq1: chr3_89042467_89042692
seq2: B6Ng01-343L13.g_73_298

seq1  AGGGTACATTAGGAGAGAAGGAAGCAGTATGTGGGTGGCCAGGCTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACATTAGGAGAGAAGGAAGCAGTATGTGGGTGGCCAGGCTGTGTG  50

seq1  GGAGCACAGGGAGAGGAATAGGGAGGGGCCCAGCGGGTGGCAGGGCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACAGGGAGAGGAATAGGGAGGGGCCCAGCGGGTGGCAGGGCCCCC  100

seq1  AGGACAGGGCTGCTGACTTGCCTGGGGTGCTCCGGAGCAGAGTCCGCGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGGGCTGCTGACTTGCCTGGGGTGCTCCGGAGCAGAGTCCGCGGT  150

seq1  GGCCACAGCCTACAAAGAGAGAGGGAGAAGCAGCGCTGAGCGCGGTAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGCCTACAAAGAGAGAGGGAGAAGCAGCGCTGAGCGCGGTAGGA  200

seq1  TGGTGTGGGTGTGGCGGGGTTGGCTG  226
      ||||||||||||||||||||||||||
seq2  TGGTGTGGGTGTGGCGGGGTTGGCTG  226