BAC Information

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BAC

Clone NameB6Ng01-343O06
Chromosome3 (Build37)
Map Location 41,230,099 - 41,231,257
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004
Downstream genePpia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343O06.bB6Ng01-343O06.g
ACCGA126547GA126548
length1,2401,158
definitionB6Ng01-343O06.b B6Ng01-343O06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagtta
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttgggttgatttcacccctgagtttgatta
tttcctgccgtctactcctcttgggtgaatttgcttccttttttttctag
ggcttttagatgtgttgtcaagctgctagtatgtgctgtctcccgttttc
ttcttggaggcactcagcgctattgagtttccctctagaaaatgctttca
ttgtgtcccataggtttgggtacgttgtggcttcattttcattaactcta
aaagtctttaattttcttttcttttattcttcttgaccaaggatcattgg
aagaagagctttatttcagttccactgaatgttggccttcaatatttatg
tgtgtatgaagatcaggtctaggctagtgtcgattagaatacatggacat
actgacattgtttgaatctcgattagagagcgccgagtac
gaattcacagagatccacctgcctctgcaattaaagacatgtgtcatcat
tgcctggcaagtgttcttattttcaaacaaagcgttgataaaacccaact
tccagtgagaacatctgaccccatcaaatctcaccaggtagtccagacta
cttcagcaggttattaactccagattacagccctccctaaagaccttagg
gcatggagagaaaattacccatcgctgagccctagggagcaacaaaagag
accacttgaaagtatactactttgacatagcgttctgacttattgctgca
gtaataatggttatcatgattagatttgcactcatttatacttttcatat
ttatactgatgtaaaatgggccttcttttagcagattaactaatatcaac
acagaaacagttacatatttttatttacttattttattttgagggagagg
agacactgatccacccgcagtcctccctgttgctcttcctgctcaccgat
ctctccagatctgttttcctaatcattctaaagccctcccatggattttg
tgctttttttttatttttcctaactttctttcttttggcagggtctatgt
tggctttgaacttgtaatcctcctgttccagcctccccagtatgagatta
caggtatgtccatcatatgtgctgtctctgtctctgtctctgtttctctc
tgtatgcatgtttatatatgtgtggataaattttttttaattctttgaca
aattcatacatgaaaataatacattttggtaactattaccctccctacag
atatgggcttgtttacaggtgcgggcaaatgtggagggcacaggccaacc
ctgagtgctagtctttctagtgctttctatcttgttctttgagatagcct
gtctcatgctggacctaatgaaggagccctggctgtccagccaacaaacc
acagggtttcacctgtcatcacctgctcagccctggggttacaaacatgt
gccaccatgcttgacttttaaatgggttatgaggcttgaacacttcagta
ttctcttcttagtcacagtgcttaggactctaggtctacaggagatgtat
aggttaggtgaaccatccacccaccgattataggatctggatctggatac
attacgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41230099_41231257
seq2: B6Ng01-343O06.g_71_1228 (reverse)

seq1  ATCGTAATGGTATTCCAGAT-CAGATTCCTATTATTGGGTGGTGATTGTG  49
      |||||||| ||| ||||||| |||| |||||| || ||  ||||  || |
seq2  ATCGTAAT-GTA-TCCAGATCCAGA-TCCTATAATCGGTGGGTGGATG-G  46

seq1  TTCACCTAACCTTATACATCT-CTGTAGACCTAGAGTCTTAAGCACTGTG  98
      ||||||||||| ||||||||| |||||||||||||||| |||||||||||
seq2  TTCACCTAACC-TATACATCTCCTGTAGACCTAGAGTCCTAAGCACTGTG  95

seq1  ACTA--GAGAG-ATACTGAAGTTGGTCAAGCTTCATAACCCATTTAAAAA  145
      ||||   |||| ||||||||| || |||||| ||||||||||||| ||||
seq2  ACTAAGAAGAGAATACTGAAG-TGTTCAAGCCTCATAACCCATTT-AAAA  143

seq1  GTCAAGCATGGTGGCACATGTTTGTAACCCCAGGGCTGAGCAGGTGATGA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCATGGTGGCACATGTTTGTAACCCCAGGGCTGAGCAGGTGATGA  193

seq1  CAGGTGAAACCCTGTGGTTTGTTGGCTGGACAGCCAGGGCTCCTTCATTA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAAACCCTGTGGTTTGTTGGCTGGACAGCCAGGGCTCCTTCATTA  243

seq1  GGTCCAGCATGAGACAGGCTATCTCAAAGAACAAGATAGAAAGCACTAG-  294
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTCCAGCATGAGACAGGCTATCTCAAAGAACAAGATAGAAAGCACTAGA  293

seq1  AAGACTAGCACTCAGGGTTGGCCTGTGCCCTCCACATTTGCCCGCACCTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTAGCACTCAGGGTTGGCCTGTGCCCTCCACATTTGCCCGCACCTG  343

seq1  TAAACAAGCCCATATCTGTAGGGAGGGTAATAGTTACCAAAATGTATTAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGCCCATATCTGTAGGGAGGGTAATAGTTACCAAAATGTATTAT  393

seq1  TTTCATGTATGAATTTGTCAAAGAATTAAAAAAAATTTATCCACACATAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTATGAATTTGTCAAAGAATTAAAAAAAATTTATCCACACATAT  443

seq1  ATAAACATGCATACAGAGAGAAACAGAGACAGAGACAGAGACAGCACATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATGCATACAGAGAGAAACAGAGACAGAGACAGAGACAGCACATA  493

seq1  TGATGGACATACCTGTAATCTCATACTGGGGAGGCTGGAACAGGAGGATT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGACATACCTGTAATCTCATACTGGGGAGGCTGGAACAGGAGGATT  543

seq1  ACAAGTTCAAAGCCAACATAGACCCTGCCAAAAGAAAGAAAGTTAGGAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTCAAAGCCAACATAGACCCTGCCAAAAGAAAGAAAGTTAGGAAA  593

seq1  AATAAAAAAAAAGCACAAAATCCATGGGAGGGCTTTAGAATGATTAGGAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAAAAAGCACAAAATCCATGGGAGGGCTTTAGAATGATTAGGAA  643

seq1  AACAGATCTGGAGAGATCGGTGAGCAGGAAGAGCAACAGGGAGGACTGCG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATCTGGAGAGATCGGTGAGCAGGAAGAGCAACAGGGAGGACTGCG  693

seq1  GGTGGATCAGTGTCTCCTCTCCCTCAAAATAAAATAAGTAAATAAAAATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATCAGTGTCTCCTCTCCCTCAAAATAAAATAAGTAAATAAAAATA  743

seq1  TGTAACTGTTTCTGTGTTGATATTAGTTAATCTGCTAAAAGAAGGCCCAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTGTTTCTGTGTTGATATTAGTTAATCTGCTAAAAGAAGGCCCAT  793

seq1  TTTACATCAGTATAAATATGAAAAGTATAAATGAGTGCAAATCTAATCAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATCAGTATAAATATGAAAAGTATAAATGAGTGCAAATCTAATCAT  843

seq1  GATAACCATTATTACTGCAGCAATAAGTCAGAACGCTATGTCAAAGTAGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACCATTATTACTGCAGCAATAAGTCAGAACGCTATGTCAAAGTAGT  893

seq1  ATACTTTCAAGTGGTCTCTTTTGTTGCTCCCTAGGGCTCAGCGATGGGTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTCAAGTGGTCTCTTTTGTTGCTCCCTAGGGCTCAGCGATGGGTA  943

seq1  ATTTTCTCTCCATGCCCTAAGGTCTTTAGGGAGGGCTGTAATCTGGAGTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCTCCATGCCCTAAGGTCTTTAGGGAGGGCTGTAATCTGGAGTT  993

seq1  AATAACCTGCTGAAGTAGTCTGGACTACCTGGTGAGATTTGATGGGGTCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCTGCTGAAGTAGTCTGGACTACCTGGTGAGATTTGATGGGGTCA  1043

seq1  GATGTTCTCACTGGAAGTTGGGTTTTATCAACGCTTTGTTTGAAAATAAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCTCACTGGAAGTTGGGTTTTATCAACGCTTTGTTTGAAAATAAG  1093

seq1  AACACTTGCCAGGCAATGATGACACATGTCTTTAATTGCAGAGGCAGGTG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGCCAGGCAATGATGACACATGTCTTTAATTGCAGAGGCAGGTG  1143

seq1  GATCTCTGTGAATTC  1159
      |||||||||||||||
seq2  GATCTCTGTGAATTC  1158