BAC Information

Click to search

BAC

Clone NameB6Ng01-344H20
Chromosome3 (Build37)
Map Location 81,192,575 - 81,193,737
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344H20.bB6Ng01-344H20.g
ACCGA126963GA126964
length1,2031,157
definitionB6Ng01-344H20.b B6Ng01-344H20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccactttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggatagataaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagagcaagccattgctgtt
ctgttcaggaatttttcccctgtacccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggagattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacttccttagttagagtcacgccaagatattttatattat
ttgtgactattgagaaaggtgttgtttccctaatttctttctcagcctgt
ttattctttgtatagagaaaggcattgacttgtttggagttattttatta
tccagctactcaacttagctgtttttcagttaggagcctctcctgtggat
ttttaggttcacttaaatttacatcctattcaacttggcgaaggggaatt
tgactcccgtcatggatccttggatccctcttgtgttgccgaaatggctc
tcg
gaattctgtggtactgtgaaatggctcactatagagacaaggaacagaaa
gagtatcactggcctctatcactcctactgagtgacataggacaacatta
taaatacaatgggaaacagagaagggaaaaatgaattgcgtgatggtgag
accttcaaacgtctgccacctctttatatgtatgtataccttgtacgtgt
acctaatagtgtattagaatccatgactcactatgactctttaaatatac
cacttgcatttaccttttttgctattcaaagtcttagcagttggcatcca
cacttccatactgtgtgcatccaaatcatatgactttatacattagataa
aagttaaggagaatggctttgataataaataaattttcaatcatggatgt
attaaagtggctatgaactttttaatgtttcttttttcctcctcctcctt
ctcttttttgtaagatgcctttaactatgatgtgtttcaggcagaactct
ttagtgatacctgagtcaaattggtttagcccaacaatatgctccctgct
tcttttccctcctcgtctcttgtcccttctttttcccttgcccgtccctc
acctccaagtccctccactttcctttcttctttcttttattttccctttc
tctcccctgtcccactccccactctgtccccttctccactgccggatccg
ggtctagctctgttgccctgagtgagctaggacttgttaagtattaaaac
ttgacaatagctctgccacattctttcaaccttcattttgtagctcataa
ccttaacttgacctattgtttcttgccctgacaaaaaccaaacaaacaaa
caaacaaaaaacaaacaaaaacaaaaatcccttgtactttgccacgaagt
cttgcagacttgggagaccctgccagtcttgcctctagacccaggctatg
agcttaagggcagagtctgatgcttagtctagatagtctatatgttgcag
aggagttgcaatgtgtaatgttgcaatgcacttgttcctggttttctcca
tgtacacctgatctgaagactgctaatgatcttcagttctgaattctagc
tcctagctgtgttcacaagaataatcggtcttggagcatgcattcataac
tgtcaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81192575_81193737
seq2: B6Ng01-344H20.g_65_1221 (reverse)

seq1  ATTGACAGTTTATTGAATGCATGCTCCAAGACCGATTAATC-TGTG-ACA  48
      ||||||||||   ||||||||||||||||||||||||| || |||| |||
seq2  ATTGACAGTT--ATGAATGCATGCTCCAAGACCGATTATTCTTGTGAACA  48

seq1  CAGCTAGGAGCTAGGATCCAGAACTG-AGATCATTAGCAGTCTTCAGAAC  97
      |||||||||||||| || |||||||| |||||||||||||||||||| | 
seq2  CAGCTAGGAGCTAGAATTCAGAACTGAAGATCATTAGCAGTCTTCAG-AT  97

seq1  CAGGTTGTACATGGAGAAAACCAGGAACAAGTGCATTTGCAACATTTACA  147
      |||| |||||||||||||||||||||||||||||| |||||||| |||| 
seq2  CAGG-TGTACATGGAGAAAACCAGGAACAAGTGCA-TTGCAACA-TTAC-  143

seq1  ACATTTGCAACTCCTCCTGCAACATATAGACTATCTAGACTAAGCATCAG  197
      ||| ||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACA-TTGCAACTCCT-CTGCAACATATAGACTATCTAGACTAAGCATCAG  191

seq1  ACTCTGCCCCTTAAGCTCATAGCCTGGGTCTAGAGGCAAGACTGGCAGGG  247
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTG-CCCTTAAGCTCATAGCCTGGGTCTAGAGGCAAGACTGGCAGGG  240

seq1  TCTCCCAAGTCTGCAAGACTTCGTGGCAAAGTACAA-GGATTTTTGTTTT  296
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTCCCAAGTCTGCAAGACTTCGTGGCAAAGTACAAGGGATTTTTGTTTT  290

seq1  TGTTTGTTTTTTGTTTGTTTGTTTGTTTGGTTTTTGTCAGGGCAAGAAAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTTTGTTTGTTTGTTTGTTTGGTTTTTGTCAGGGCAAGAAAC  340

seq1  AATAGGTCAAGTTAAGGTTATGAGCTACAAAATGAAGGTTGAAAGAATGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTCAAGTTAAGGTTATGAGCTACAAAATGAAGGTTGAAAGAATGT  390

seq1  GGCAGAGCTATTGTCAAGTTTTAATACTTAACAAGTCCTAGCTCACTCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCTATTGTCAAGTTTTAATACTTAACAAGTCCTAGCTCACTCAG  440

seq1  GGCAACAGAGCTAGACCCGGATCCGGCAGTGGAGAAGGGGACAGAGTGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACAGAGCTAGACCCGGATCCGGCAGTGGAGAAGGGGACAGAGTGGG  490

seq1  GAGTGGGACAGGGGAGAGAAAGGGAAAATAAAAGAAAGAAGAAAGGAAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGACAGGGGAGAGAAAGGGAAAATAAAAGAAAGAAGAAAGGAAAG  540

seq1  TGGAGGGACTTGGAGGTGAGGGACGGGCAAGGGAAAAAGAAGGGACAAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGACTTGGAGGTGAGGGACGGGCAAGGGAAAAAGAAGGGACAAGA  590

seq1  GACGAGGAGGGAAAAGAAGCAGGGAGCATATTGTTGGGCTAAACCAATTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGGAGGGAAAAGAAGCAGGGAGCATATTGTTGGGCTAAACCAATTT  640

seq1  GACTCAGGTATCACTAAAGAGTTCTGCCTGAAACACATCATAGTTAAAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGGTATCACTAAAGAGTTCTGCCTGAAACACATCATAGTTAAAGG  690

seq1  CATCTTACAAAAAAGAGAAGGAGGAGGAGGAAAAAAGAAACATTAAAAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTACAAAAAAGAGAAGGAGGAGGAGGAAAAAAGAAACATTAAAAAG  740

seq1  TTCATAGCCACTTTAATACATCCATGATTGAAAATTTATTTATTATCAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGCCACTTTAATACATCCATGATTGAAAATTTATTTATTATCAAA  790

seq1  GCCATTCTCCTTAACTTTTATCTAATGTATAAAGTCATATGATTTGGATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCTCCTTAACTTTTATCTAATGTATAAAGTCATATGATTTGGATG  840

seq1  CACACAGTATGGAAGTGTGGATGCCAACTGCTAAGACTTTGAATAGCAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGTATGGAAGTGTGGATGCCAACTGCTAAGACTTTGAATAGCAAA  890

seq1  AAAGGTAAATGCAAGTGGTATATTTAAAGAGTCATAGTGAGTCATGGATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAAATGCAAGTGGTATATTTAAAGAGTCATAGTGAGTCATGGATT  940

seq1  CTAATACACTATTAGGTACACGTACAAGGTATACATACATATAAAGAGGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACACTATTAGGTACACGTACAAGGTATACATACATATAAAGAGGT  990

seq1  GGCAGACGTTTGAAGGTCTCACCATCACGCAATTCATTTTTCCCTTCTCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACGTTTGAAGGTCTCACCATCACGCAATTCATTTTTCCCTTCTCT  1040

seq1  GTTTCCCATTGTATTTATAATGTTGTCCTATGTCACTCAGTAGGAGTGAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCATTGTATTTATAATGTTGTCCTATGTCACTCAGTAGGAGTGAT  1090

seq1  AGAGGCCAGTGATACTCTTTCTGTTCCTTGTCTCTATAGTGAGCCATTTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCAGTGATACTCTTTCTGTTCCTTGTCTCTATAGTGAGCCATTTC  1140

seq1  ACAGTACCACAGAATTC  1163
      |||||||||||||||||
seq2  ACAGTACCACAGAATTC  1157