BAC Information

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BAC

Clone NameB6Ng01-344J13
Chromosome3 (Build37)
Map Location 117,593,094 - 117,594,267
singlet/doubletsinglet
Overlap genenone
Upstream geneFrrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneDpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344J13.bB6Ng01-344J13.g
ACCGA127041GA127042
length1,1181,161
definitionB6Ng01-344J13.b B6Ng01-344J13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttcttttaatttctttcttcagggacttgaagtttttatcat
acagatctttcacttccttcggttagagtcacgccgagatattttatatt
atttggtggctattgagaaggtggttgtttccctaatttctttctcagcc
tgtttattctttggtgtagagaaagggccattggacttgtttggagttaa
ttttaatatccagctacttcacgagctgttatcaggttagggaggtctct
ggttggaatttttagggt

gaattcatgctaccttctcacacctgcacgtcctctactgattggctaca
tcaagatcattgtgatgggtcatgggtactctaatctagtctggggacac
atttctgtatgcttctcttattatttatgaaaatatagatttatttcttc
tttgtaagtatttttctaggaccttcttgtctaggagttatgggaatttc
ataagctccctgaaaatcaaagcttgtgcataggaattcccttggttatc
agtcgtaactctgtattagcccaaaggtagcccttactctataaaatttt
atccttcttctgcattggcctcatttaacacgacccaccctgtcatagac
tcagtttgatgtctttttcaaaggatacgtcttttggcctggcgctatgg
gtcagtaggtaaggattcttaagtctatgactaatccctgggcttctatc
cctggggcctacagaacagagggagaaaactgactcctgcttggtgtact
ccctctgactgttatagacaggacacctccctctgccaccatacacagaa
cagataagttttatcaaagacaactaagaacttcagtggactctttagga
aattggggttctcaaagcagtacacctaagatctttcccatctcatcacc
acatctgacactttttcttactacattgaagcctggctactcctcgtatt
ctcagaaatgggtgaagacaaacttactctgccagactttcatttcaacc
accattatgttgtttggatatcatgtcagtgaaaaaaagcctgcagtatc
ttttgctaacctcaaacctcagattcacaatacattatttatacaaggtg
tatagattgcctctctattacagaacaagattgatttttgtccaaagtaa
aatggtaggctcttctagaaggcgaaagggggaatatgggaacaaaacca
aatggatacaaaagcttatataaccttagagaaatgatttatttctgcgt
caaagctaagatttgttgtcatttatcagagttttcacaaggtctagtat
taaatcccaacacaaagtagaattttttctttacaagaatatgacagagt
ttgtcagttatttttgcttttataaaaacaatgatttacttcccacttcc
tgaagacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117593094_117594267
seq2: B6Ng01-344J13.g_65_1225

seq1  GAATTCATGCTACCTTCTCACACCTGCACGTCCTCTACTGATTGGCTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCTACCTTCTCACACCTGCACGTCCTCTACTGATTGGCTACA  50

seq1  TCAAGATCATTGTGATGGGTCATGGGTACTCTAATCTAGTCTGGGGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATCATTGTGATGGGTCATGGGTACTCTAATCTAGTCTGGGGACAC  100

seq1  ATTTCTGTATGCTTCTCTTATTATTTATGAAAATATAGATTTATTTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTATGCTTCTCTTATTATTTATGAAAATATAGATTTATTTCTTC  150

seq1  TTTGTAAGTATTTTTCTAGGACCTTCTTGTCTAGGAGTTATGGGAATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGTATTTTTCTAGGACCTTCTTGTCTAGGAGTTATGGGAATTTC  200

seq1  ATAAGCTCCCTGAAAATCAAAGCTTGTGCATAGGAATTCCCTTGGTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTCCCTGAAAATCAAAGCTTGTGCATAGGAATTCCCTTGGTTATC  250

seq1  AGTCGTAACTCTGTATTAGCCCAAAGGTAGCCCTTACTCTATAAAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGTAACTCTGTATTAGCCCAAAGGTAGCCCTTACTCTATAAAATTTT  300

seq1  ATCCTTCTTCTGCATTGGCCTCATTTAACACGACCCACCCTGTCATAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCTTCTGCATTGGCCTCATTTAACACGACCCACCCTGTCATAGAC  350

seq1  TCAGTTTGATGTCTTTTTCAAAGGATACGTCTTTTGGCCTGGCGCTATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTGATGTCTTTTTCAAAGGATACGTCTTTTGGCCTGGCGCTATGG  400

seq1  GTCAGTAGGTAAGGATTCTTAAGTCTATGACTAATCCCTGGGCTTCTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTAGGTAAGGATTCTTAAGTCTATGACTAATCCCTGGGCTTCTATC  450

seq1  CCTGGGGCCTACAGAACAGAGGGAGAAAACTGACTCCTGCTTGGTGTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGCCTACAGAACAGAGGGAGAAAACTGACTCCTGCTTGGTGTACT  500

seq1  CCCTCTGACTGTTATAGACAGGACACCTCCCTCTGCCACCATACACAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGACTGTTATAGACAGGACACCTCCCTCTGCCACCATACACAGAA  550

seq1  CAGATAAGTTTTATCAAAGACAACTAAGAACTTCAGTGGACTCTTTAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAGTTTTATCAAAGACAACTAAGAACTTCAGTGGACTCTTTAGGA  600

seq1  AATTGGGGTTCTCAAAGCAGTACACCTAAGATCTTTCCCATCTCATCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGGTTCTCAAAGCAGTACACCTAAGATCTTTCCCATCTCATCACC  650

seq1  ACATCTGACACTTTTTCTTACTACATTGAAGCCTGGCTACTCCTCGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGACACTTTTTCTTACTACATTGAAGCCTGGCTACTCCTCGTATT  700

seq1  CTCAGAAATGGGTGAAGACAAACTTACTCTGCCAGACTTTCATTTCAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAATGGGTGAAGACAAACTTACTCTGCCAGACTTTCATTTCAACC  750

seq1  ACCATTATGTTGTTTGGATATCATGTCAGTGAAAAAAAGCCTGCAGTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTATGTTGTTTGGATATCATGTCAGTGAAAAAAAGCCTGCAGTATC  800

seq1  TTTTGCTAACCTCAAACCTCAGATTCACAATACATTATTTATACAAGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTAACCTCAAACCTCAGATTCACAATACATTATTTATACAAGGTG  850

seq1  TATAGATTGCCTCTCTATTACAGAACAAGATTGATTTTTGTCCAAAGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATTGCCTCTCTATTACAGAACAAGATTGATTTTTGTCCAAAGTAA  900

seq1  AATGGTAGGCTCTTCTAGAAGGCGAAAGGGGGAATAT-GGAACAAAACCA  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATGGTAGGCTCTTCTAGAAGGCGAAAGGGGGAATATGGGAACAAAACCA  950

seq1  AATGGATACAAAAGCTTATATAAACCTTAGAGAAAATGAATTTATTTCTG  999
      ||||||||||||||||||||| |||||||||| ||||| |||||||||||
seq2  AATGGATACAAAAGCTTATAT-AACCTTAGAG-AAATG-ATTTATTTCTG  997

seq1  AAGGTCAAAGCTAAGATTTGTTGTTCATTTATCAGAGTTTTCAACAAAGG  1049
         |||||||||||||||||||| |||||||||||||||||||   ||||
seq2  --CGTCAAAGCTAAGATTTGTTG-TCATTTATCAGAGTTTTCA--CAAGG  1042

seq1  TCTAGTATTAAATCCCAACACAAAAGTAGAA-TTTTTCTTTACAAGAATA  1098
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  TCTAGTATTAAATCCCAACAC-AAAGTAGAATTTTTTCTTTACAAGAATA  1091

seq1  TGACAGAAATTTGTCAGTTATTTTTGCTTTTTATAAAACACTATGATTTT  1148
      |||||| | |||||||||||||||||| |||||||||| || ||||  ||
seq2  TGACAG-AGTTTGTCAGTTATTTTTGC-TTTTATAAAA-ACAATGA--TT  1136

seq1  TACTCCCACCTTCCTAGAAGACAAAA  1174
      |||| ||  |||||| ||||||||||
seq2  TACTTCCCACTTCCT-GAAGACAAAA  1161


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