BAC Information

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BAC

Clone NameB6Ng01-344J22
Chromosome3 (Build37)
Map Location 64,519,992 - 64,521,104
singlet/doubletsinglet
Overlap gene4933425M15Rik
Upstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918
Downstream geneLOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344J22.bB6Ng01-344J22.g
ACCGA127059GA127060
length1,1051,180
definitionB6Ng01-344J22.b B6Ng01-344J22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatggtcaagacatcatttggatccttgctagggtgtacatcat
aaaggaattcttttagtcctggtataacacttcttggtactgcaaatcca
atagttccaccaaaataggggaaatactcaggctttgcaatgagagctga
ggtaatccaggcttcggtggctatccatgtcctgtcagttatgttatgat
gaatcacttccagcacaaaggggctgaggtcaatgtcagttgcataaagc
acaatgactttggcagtggaactctttactgcatcaacagctattttcat
tttctcattggagtagacttttggaatggtttcagagaaagcaacacaaa
ggttggcactctccatttcttccctaaagaattttactccatattttcca
taatcatcatcagatgcaatagcacctacccagacccaaccaaagtgtct
aattagattcacgatggcctcagactggaatttatcactgggtattgtgc
gtagaatgtatggaaattgaatatcattactaaaaattgaggaggaagaa
gcatatcccacctggaatttaaaatatttatagttactagaaagctgtag
ccaaaatttaaaatgaaaatgacagcttgtgaatatttgagaaggaggtg
aacagggatccctttgccctcacatcctactgtagacagtgacttcctgt
ttaatctactttctgggtgtagagggggacaattttgacaactctttggt
tgctctatcactagttttatgggtggaaccacagcagtttcaggaatgtc
ccttgcactttctttcagcatccttgacatttttcactcccctgtgtcag
aacattcagtctcttcctcaggtgtagcatctgctgtacagagatgattc
gctgagactaagtctcaatctgctgtcacacgactttatctcctgcgtgt
tctctcagtctaacctctgataccttattgtgtatgctctgctctctctt
atcatgttctgctgtcagagtcctgagtatgtagtcccaaatcttttctg
agcgacatgaaagatgggagtctctaatcagaagagtaaccactcttgtt
ctaca
gaattctttgaaggtctgatagaactctgcacaaaacccatctggtcctg
ggattctttttggttgagagattattaatgactgtttctatttctttagg
ggatatgggactgtttatattgttcatctgatcctggtttaactttggta
cctggtatctgtctagaaaattgtccatttcatccaggttttccagcttt
gttgagtaggatttgatgatattttggatttcctcagtttctgttcttaa
gtcccccttttcatttatgattttgttaattaggataaggtcactgtgcc
tgctagttagggtggctaaaggtttatctattttgttgattttctcaaag
aaccagctcctggtttggctcattctttgtatagttctttttgtttctac
ttgatagattttacccctgagtttatttcctgcagtctactcatctttgc
tgaatttgcttccttttgttctagagctgtcaggtgtgttttcaggatgc
tagtgtatgctcttcccagtatcttcttttgaggcacacagagctatatg
ttttcctcttatgactgctttcattgtttcccataagtttgggcatgttg
tggcttcattttcattaaactctaaaaagtttgcaatttatttctttatt
tcttttctttgacctagttatcaatgcatagagtgctgttcagcttccag
gtgtatgtgggctttctattatttttgttgttattgaagatcagtcttag
tccatggtgatttgataggatacattggattatttcactcttcttatatc
tattgaggcctattttgtgaatgattatatggtcagttttggagaaggta
caatgagttgttaagaagaaggtatatccttttgttttaggataaatgtt
ctgtagatatctgccaaatccatttgttcataacttctgtagtttcacca
agtctctgttagtttctgtttccatgatcagtcatcatgagagtgtgatt
gaagtcttccataatattgtgtgctgtgcatggtgtacttggagcttagt
aaggtttcttttatgatggaatgtcttgcaatttggagcatagatgtcag
aattgagaagttcaatcttggactatcttggtgagaatgaatggtctctc
ttactgccttgataaacgctataagtgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_64519992_64521104
seq2: B6Ng01-344J22.b_47_1151

seq1  GAATTCAATGGTCAAGACATCATTTGGATCCTTGCTAGGGTGTACATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGTCAAGACATCATTTGGATCCTTGCTAGGGTGTACATCAT  50

seq1  AAAGGAATTCTTTTAGTCCTGGTATAACACTTCTTGGTACTGCAAATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATTCTTTTAGTCCTGGTATAACACTTCTTGGTACTGCAAATCCA  100

seq1  ATAGTTCCACCAAAATAGGGGAAATACTCAGGCTTTGCAATGAGAGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCCACCAAAATAGGGGAAATACTCAGGCTTTGCAATGAGAGCTGA  150

seq1  GGTAATCCAGGCTTCGGTGGCTATCCATGTCCTGTCAGTTATGTTATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATCCAGGCTTCGGTGGCTATCCATGTCCTGTCAGTTATGTTATGAT  200

seq1  GAATCACTTCCAGCACAAAGGGGCTGAGGTCAATGTCAGTTGCATAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACTTCCAGCACAAAGGGGCTGAGGTCAATGTCAGTTGCATAAAGC  250

seq1  ACAATGACTTTGGCAGTGGAACTCTTTACTGCATCAACAGCTATTTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGACTTTGGCAGTGGAACTCTTTACTGCATCAACAGCTATTTTCAT  300

seq1  TTTCTCATTGGAGTAGACTTTTGGAATGGTTTCAGAGAAAGCAACACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATTGGAGTAGACTTTTGGAATGGTTTCAGAGAAAGCAACACAAA  350

seq1  GGTTGGCACTCTCCATTTCTTCCCTAAAGAATTTTACTCCATATTTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCACTCTCCATTTCTTCCCTAAAGAATTTTACTCCATATTTTCCA  400

seq1  TAATCATCATCAGATGCAATAGCACCTACCCAGACCCAACCAAAGTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATCATCAGATGCAATAGCACCTACCCAGACCCAACCAAAGTGTCT  450

seq1  AATTAGATTCACGATGGCCTCAGACTGGAATTTATCACTGGGTATTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGATTCACGATGGCCTCAGACTGGAATTTATCACTGGGTATTGTGC  500

seq1  GTAGAATGTATGGAAATTGAATATCATTACTAAAAATTGAGGAGGAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATGTATGGAAATTGAATATCATTACTAAAAATTGAGGAGGAAGAA  550

seq1  GCATATCCCACCTGGAATTTAAAATATTTATAGTTACTAGAAAGCTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCCCACCTGGAATTTAAAATATTTATAGTTACTAGAAAGCTGTAG  600

seq1  CCAAAATTTAAAATGAAAATGACAGCTTGTGAATATTTGAGAAGGAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATTTAAAATGAAAATGACAGCTTGTGAATATTTGAGAAGGAGGTG  650

seq1  AACAGGGATCCCTTTGCCCTCACATCCTACTGTAGACAGTGACTTCCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGATCCCTTTGCCCTCACATCCTACTGTAGACAGTGACTTCCTGT  700

seq1  TTAATCTACTTTCTGGGTGTAGAGGGGGACAATTTTGACAACTCTTTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTACTTTCTGGGTGTAGAGGGGGACAATTTTGACAACTCTTTGGT  750

seq1  TGCTCTATCACTAGTTTTATGGGTGGAACCACAGCAGTTTCAGGAATGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTATCACTAGTTTTATGGGTGGAACCACAGCAGTTTCAGGAATGTC  800

seq1  CCTTGCACTTTCTTTCAGCATCCTTGACATTTTTCACTCCCCTGTGTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCACTTTCTTTCAGCATCCTTGACATTTTTCACTCCCCTGTGTCAG  850

seq1  AACATTCAGTCTCTTCCTCAGGTGTAGCATCTGCTGTACAGAGATGATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCAGTCTCTTCCTCAGGTGTAGCATCTGCTGTACAGAGATGATTC  900

seq1  GCTGAGACTAAGTCTCAATCTGCTGTCACACGACTTTATCTCCTGCGTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGACTAAGTCTCAATCTGCTGTCACACGACTTTATCTCCTGCGTGT  950

seq1  TCTCTCAGTCTAACCTCTGATACCTTAATTGTGTTATGCTCTTGCTTCTC  1000
      |||||||||||||||||||||||||| |||||| ||||||| ||| ||||
seq2  TCTCTCAGTCTAACCTCTGATACCTT-ATTGTG-TATGCTC-TGC-TCTC  996

seq1  TCTTATCATGTCCTGCTGTCAGGAGTCCTGAGTATGTAGGTCCCAAATCT  1050
      ||||||||||| ||||||||| |||||||||||||||| |||||||||||
seq2  TCTTATCATGTTCTGCTGTCA-GAGTCCTGAGTATGTA-GTCCCAAATCT  1044

seq1  TTTCTTGAGCGACATGAAAGAATGGAGTCCTCTAATCAGAAGAGTAAACA  1100
      |||| ||||||||||||||||  ||||| |||||||||||||||||| ||
seq2  TTTC-TGAGCGACATGAAAGATGGGAGT-CTCTAATCAGAAGAGTAACCA  1092

seq1  CTCTTGTCCTACA  1113
      ||||||| |||||
seq2  CTCTTGTTCTACA  1105