BAC Information

Click to search

BAC

Clone NameB6Ng01-344P23
Chromosome5 (Build37)3 (Build37)
Map Location 119,832,476 - 119,832,759159,143,455 - 159,144,523
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665162, Thrap2, LOC100039488, EG665194
Downstream geneLOC100039529, LOC100039542, Tbx3, EG433945, Tbx5, Rbm19, LOC100039609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344P23.bB6Ng01-344P23.g
ACCGA127338GA127339
length4781,071
definitionB6Ng01-344P23.b B6Ng01-344P23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(119,832,476 - 119,832,759)(159,143,455 - 159,144,523)
sequence
tttggaggaaaagaaaactttcattgaaaagatgcctccatcagattttc
tgtaggtaagtccatgaggacattttaacaaattaatgattgatacaggc
aagaccagcccactgtgtatggtaccactggacaggtaccacttcagaaa
acaggctgaaggctgaagtggtggctcagccattgagatcattgactgct
cttccagaagacttggattcaattcccagcatccatgttttgggctcaca
accatctatctataactccacttccaggagatgtgacatgatcttccagt
ttctgcaggtactgcatgaatgtggtgcacagatatacatgcaggcaaca
tatacatgaaatatttccaaaacatttttaaaagaaagggttaggaaagg
agagagaggtaaagagaagaaggaggtggtggcagcagtggcagcagtgg
aggagaaggaagaggaggaggaggagga

gaattcagggacttgaagcatatgtcctgccataaccacattatttctgt
gggaaggtcaaaggcctggaagaatttcttttggctcttttcacatgact
agatgtgataagatataacatcaggtgaattctctgctgcacttttattt
gcttaagctaagtataaatgccacctagtgtttttcttgttttaataata
aaattgagaagtgctttgtttgtaataatggagctcagagtactggagta
ccctggtttgtcaccactcagatctttgaaatatatttttttatactgag
acttgcttaccatggggcacatcggcactttttcctaccctgctcttgta
gtcaagctcagagccttacataagacaagtacatgagatataccccagat
atcacaaagacttttcataagcaatgagagctaatcatctctacatgctt
tgatttctatttgttcttttccatatccaatctagtttatagcttatcaa
ttcagtaattgattctaatacactttctggcctgaaggaaataccttatt
tccttctgaagagaagttaattttattttgaaagatattttattctagcc
attagaggtacagaacactagcatgttgaaaatcagaattatcatattga
aatcagatacctgccatttctcacaagaaaccttcagaaaattgaaccca
ttaacattgtttcatggatgtgaggtagagtctgtaacttacacatgtgg
tttacaaggaagcccaggataccactatactcatccaggaggggcttaat
aagacccagctccttttttgagaatatataaattattaacaattcctgat
ggggattttttttatttaataatgtttcccatatacctgtaagaaagctc
ttacctatgttcttataaacaacccttaattacactgattggttaaccaa
gttagatatgggtagaataatttcaatggtctgtgtttgttgtcttatct
agtgagtaaatgttctgttcacactttcctcaaggtgaagtcacacattg
tagtagcttctataaacagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_119832476_119832759
seq2: B6Ng01-344P23.b_428_534

seq1  ACATTTTTAAAAGAAAAAAAAAAAATCTGGGAAGAGTTGGCAAAGAGAAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGGCACGATAAGCGTATATTATATGAAAAAATTAATTTCAATAAAGAATT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAAATTAAAAAATATTCTTGTCATTCTTGAAGAAAAAGAATGGGGAGGGG  150
                           |||| ||     ||||||| |||   || 
seq2  --------------------ACATTTTT-----AAAAGAAAGGGTTAGGA  25

seq1  AAGAAGGAAGAG--AAGGAGAAGAAGGAGAGGAAGGGGAAGGAAGAAGGA  198
      ||| ||  ||||  || ||||||||||      ||| |  || || ||  
seq2  AAGGAGAGAGAGGTAAAGAGAAGAAGG------AGGTGGTGGCAGCAGTG  69

seq1  GGAGAAACAGAAGAGGAAGAGGGAGAAGGAGATAGAGGAAAAGAAGGAGA  248
      |      ||| || |||    |||||||||   |||||      ||||| 
seq2  G------CAGCAGTGGA----GGAGAAGGA---AGAGG------AGGAG-  99

seq1  TGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGAAGGA  284
       ||||||||                           
seq2  -GAGGAGGA---------------------------  107


seq1: chr3_159143455_159144523
seq2: B6Ng01-344P23.g_66_1136

seq1  GAATTCAGGGACTTGAAGCATATGTCCTGCCATAACCACATTATTTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGACTTGAAGCATATGTCCTGCCATAACCACATTATTTCTGT  50

seq1  GGGAAGGTCAAAGGCCTGGAAGAATTTCTTTTGGCTCTTTTCACATGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGTCAAAGGCCTGGAAGAATTTCTTTTGGCTCTTTTCACATGACT  100

seq1  AGATGTGATAAGATATAACATCAGGTGAATTCTCTGCTGCACTTTTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGATAAGATATAACATCAGGTGAATTCTCTGCTGCACTTTTATTT  150

seq1  GCTTAAGCTAAGTATAAATGCCACCTAGTGTTTTTCTTGTTTTAATAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGCTAAGTATAAATGCCACCTAGTGTTTTTCTTGTTTTAATAATA  200

seq1  AAATTGAGAAGTGCTTTGTTTGTAATAATGGAGCTCAGAGTACTGGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAGAAGTGCTTTGTTTGTAATAATGGAGCTCAGAGTACTGGAGTA  250

seq1  CCCTGGTTTGTCACCACTCAGATCTTTGAAATATATTTTTTTATACTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTTTGTCACCACTCAGATCTTTGAAATATATTTTTTTATACTGAG  300

seq1  ACTTGCTTACCATGGGGCACATCGGCACTTTTTCCTACCCTGCTCTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTTACCATGGGGCACATCGGCACTTTTTCCTACCCTGCTCTTGTA  350

seq1  GTCAAGCTCAGAGCCTTACATAAGACAAGTACATGAGATATACCCCAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCTCAGAGCCTTACATAAGACAAGTACATGAGATATACCCCAGAT  400

seq1  ATCACAAAGACTTTTCATAAGCAATGAGAGCTAATCATCTCTACATGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAAGACTTTTCATAAGCAATGAGAGCTAATCATCTCTACATGCTT  450

seq1  TGATTTCTATTTGTTCTTTTCCATATCCAATCTAGTTTATAGCTTATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTATTTGTTCTTTTCCATATCCAATCTAGTTTATAGCTTATCAA  500

seq1  TTCAGTAATTGATTCTAATACACTTTCTGGCCTGAAGGAAATACCTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAATTGATTCTAATACACTTTCTGGCCTGAAGGAAATACCTTATT  550

seq1  TCCTTCTGAAGAGAAGTTAATTTTATTTTGAAAGATATTTTATTCTAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGAAGAGAAGTTAATTTTATTTTGAAAGATATTTTATTCTAGCC  600

seq1  ATTAGAGGTACAGAACACTAGCATGTTGAAAATCAGAATTATCATATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGGTACAGAACACTAGCATGTTGAAAATCAGAATTATCATATTGA  650

seq1  AATCAGATACCTGCCATTTCTCACAAGAAACCTTCAGAAAATTGAACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGATACCTGCCATTTCTCACAAGAAACCTTCAGAAAATTGAACCCA  700

seq1  TTAACATTGTTTCATGGATGTGAGGTAGAGTCTGTAACTTACACATGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTGTTTCATGGATGTGAGGTAGAGTCTGTAACTTACACATGTGG  750

seq1  TTTACAAGGAAGCCCAGGATACCACTATACTCATCCAGGAGGGGCTTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAGGAAGCCCAGGATACCACTATACTCATCCAGGAGGGGCTTAAT  800

seq1  AAGACCCAGCTCC-TTTTTGAGAATATATAAATTATTAACAATTCCTGAT  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAGACCCAGCTCCTTTTTTGAGAATATATAAATTATTAACAATTCCTGAT  850

seq1  GGGGA-TTTTTTTATTTAATAATGTTTCCCATATACCTGTAAGAAAGCTC  898
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTTTTTTTATTTAATAATGTTTCCCATATACCTGTAAGAAAGCTC  900

seq1  TTACCTATGTTCTTATAAACAACCC-TAATTACACTGATTGGTTAACCAA  947
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTACCTATGTTCTTATAAACAACCCTTAATTACACTGATTGGTTAACCAA  950

seq1  GTTAGATATGGGTAGAATAATTTCAATGGTCTGTGTTTGTTGTCTTATCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATATGGGTAGAATAATTTCAATGGTCTGTGTTTGTTGTCTTATCT  1000

seq1  TAGGTGAGTAGATG-TCTGTTCACACTT--CCCCAGGTGAAGTTCACACA  1044
         ||||||| ||| |||||||||||||  | | |||||||| |||||| 
seq2  --AGTGAGTAAATGTTCTGTTCACACTTTCCTCAAGGTGAAG-TCACAC-  1046

seq1  ATTGTAGGTAGCTTCTAT-AACAGCT  1069
      |||||| ||||||||||| |||||||
seq2  ATTGTA-GTAGCTTCTATAAACAGCT  1071


| Home | SequenceCutter | Blast | Download |