BAC Information

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BAC

Clone NameB6Ng01-345C02
Chromosome3 (Build37)
Map Location 149,436,196 - 149,597,734
singlet/doubletdoublet
Overlap genenone
Upstream geneLphn2, LOC100040368, LOC668893, EG381483, LOC100040620
Downstream geneLOC100040633, LOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345C02.bB6Ng01-345C02.g
ACCGA127428GA127429
length1,0211,104
definitionB6Ng01-345C02.b B6Ng01-345C02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,596,730 - 149,597,734)(149,436,196 - 149,437,309)
sequence
gaattcaataatttgcaaaataaagaggaaagtataggttgcgtggggtt
atccacaaagagctcatcattttggaaactcactctgtgctgtaaaatag
ggatccacctatgcctcacctttgctggatcattttatgatcaaggaagc
ccttttcaagctagcagactgtggtagaataaaagaagcttgacaatttt
attcactgttcttcatgagtttcccaaataataaatggtgaatttatata
aattgctatgggaaaaaaaggacaatccacaggggatttttaacttaacc
caaaaaggagacacaagtgtcacagagaaaaaaggcttgactctgaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaagaaaa
gaaaaaagaaaacccctgagcttttgatcccttttctaaatgtcttaaag
gatgatttaatgtctgtcttataaaacaaaaaactcacctaggtgaatat
gcagttgcatgtaagtatgcggggtattatataagtattgtatatctata
taagtatcacaatacatacatagtattatttgtctagaaagagggcacag
tctttccttcacagtcacatctggggacaaaaatgccaacagaaaacacc
tgacatgagctttcacttatattcatttgaaagtctgctccatcatacca
gggcaggttgggtgtgcatgaggctctggttatgacactatgtagctagt
cactggtgtcctgcaggcaggaaagcatatagcttttctctttctcttgg
ttattccttttagaactcaagtccaacaaacatgaattctgcccacattc
agggtgaaaaacaaccagttccttaccttaattattttctgaaaacttca
ttccaagaaaacaccagaagaagtactgttctaggtgaattctaatctag
aaagatgacatcagactacaagcacagtcaatagatgatagaagagatgg
atagatgaatgaatagtagat

gaattcccctgagtgttaacatcatgggataaaaaagaaacagaaacact
tcccattgggaattttctgaaaatggccatttcatctctacccaaagcca
ggaatctacagagcatactgagacaatggaggctcagaaactatttcttt
agtctcatcgttcactctctagtcttcttataactggaaatagacttcca
aaacttatattgaaagaaaaaaaaacttttaaaaaaaggtaaaaaaaaaa
tcacagctagctaagagatataaaattgaacatggatgaaagattttatt
taactcattaacaagaaagctgctgaggcgttacatgcaattcaaaccag
aatccaaagaacaaataaatttctagactaagaatattgaactgcatgta
taaattgaagcaaaagaaaattaattgagcctgtactggacagaacagag
acaataaacgatcttgaatttggttatctagaccttggagttgcaaggtt
actctcgtaggatgagcagtgaggaactctgtggacctgtacagcctact
gcgttgttccattgatgctcatacctatctgtgatttcaaggtgtttaga
ccacctgccacactgataaagtagattcactggggatgagtgcttgtgtc
atttcttatcgccactgcaatgcatttgtgtaatttaaccagtcttaaac
aacacagatttattattgaagaattctaaaagtagtacactgcagccaac
aaggctgggtcgcagatacctagctgcaactggtaaaggaaaaagtagga
gacagacacaagtattgtaaagttaggatcaggtaggaatgcaattatac
gaagatgccagaagtctagaatctcattgagtgtatcatatacttcatga
acaagaagatgggtttaggtaatctcagtctatgaggatatgggtttcag
gggcatgtgatctcgagtatctgggatgaaagggctgtggtcagtactca
tgttctcactgtgtttagctaaaggtcagtgtctgtcaacatctatgtag
gctgcctcttaaatcatagtctaaggctatgctctgtaacatgcatactc
tctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_149596730_149597734
seq2: B6Ng01-345C02.b_45_1065 (reverse)

seq1  ATCTAACTA-TCATCCATCTATCCATCTC-TCTATCATCTATTTGACTGT  48
      |||| |||| |||| |||||||||||||| ||||||||||| ||||||||
seq2  ATCT-ACTATTCATTCATCTATCCATCTCTTCTATCATCTA-TTGACTGT  48

seq1  GCTGGTTAGTCTTGATTGTCATCTTTCTAGGATTTAGAA-TCACCTAG-A  96
      ||| | ||||| ||| ||||||||||||||   |||||| |||||||| |
seq2  GCTTG-TAGTC-TGA-TGTCATCTTTCTAG--ATTAGAATTCACCTAGAA  93

seq1  CAGTACTTCTCTGGGTGTTT--CTGGAATGAAGTTTTCAGAAAATA--TT  142
      ||||||||||   |||||||   |||||||||||||||||||||||  | 
seq2  CAGTACTTCTTCTGGTGTTTTCTTGGAATGAAGTTTTCAGAAAATAATTA  143

seq1  AGGTA--GGACT-GTTG--TTTCACCCTGAATGTGGGCAGAA-TCATGTT  186
      |||||  | ||| ||||  ||||||||||||||||||||||| |||||||
seq2  AGGTAAGGAACTGGTTGTTTTTCACCCTGAATGTGGGCAGAATTCATGTT  193

seq1  --GTGGACTTGAGTTCTAAAAGGAAT-ACCAAGAG-AAGAG-AAAGCTAT  231
         ||||||||||||||||||||||| |||||||| ||||| ||||||||
seq2  TGTTGGACTTGAGTTCTAAAAGGAATAACCAAGAGAAAGAGAAAAGCTAT  243

seq1  ATGC-TTCCTGCCTGCA-GACA-CAGTGACTAGCTACATAGTGTCATAAC  278
      |||| |||||||||||| |||| |||||||||||||||||||||||||||
seq2  ATGCTTTCCTGCCTGCAGGACACCAGTGACTAGCTACATAGTGTCATAAC  293

seq1  CAGAGCCTCATGCACACCCAACCTGCCCTGCTATGATGGAGCAGACTTTC  328
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAGAGCCTCATGCACACCCAACCTGCCCTGGTATGATGGAGCAGACTTTC  343

seq1  AAATGAATATAAGTGAAAGCTCATGTCAGGTGTCTTCTGTTGGCATTTTT  378
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAATGAATATAAGTGAAAGCTCATGTCAGGTGTTTTCTGTTGGCATTTTT  393

seq1  GTCACCAGATGTGACTGTGAAGGAAGGACTGTGCCCTCTTTCTAGACATA  428
      ||| ||||||||||||||||||||| |||||||||||||||||||||| |
seq2  GTCCCCAGATGTGACTGTGAAGGAAAGACTGTGCCCTCTTTCTAGACAAA  443

seq1  TAATACTATGTATGTATTGTGATACTTATATAGATATACAATACTTATAT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTATGTATGTATTGTGATACTTATATAGATATACAATACTTATAT  493

seq1  AATACACCGCATACTTACATGCAACTGCATATTCACCTAGCTGAGTCTCT  528
      ||||| |||||||||||||||||||||||||||||||||| ||||| | |
seq2  AATACCCCGCATACTTACATGCAACTGCATATTCACCTAGGTGAGTTTTT  543

seq1  TGTCTTATAAGACAGACATTAAATCATCCTCTAAGACATTCAGAAATGGT  578
      ||| |||||||||||||||||||||||||| ||||||||| ||||| || 
seq2  TGTTTTATAAGACAGACATTAAATCATCCTTTAAGACATTTAGAAAAGGG  593

seq1  ATCAAAAGCTCAGGGTTTTTCTTTTTTCTTTTCTTTT-CTTTTTTTTTTT  627
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  ATCAAAAGCTCAGGGGTTTTCTTTTTTCTTTTCTTTTCCTTTTTTTTTTT  643

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGAGTCAAGCCTTTTT  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGAGTCAAGCCTTTTT  693

seq1  TCTCTGTGACACTTGTGTCTCCTTTTTGGGTTAAGTTAAAAATCCCCTGT  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGACACTTGTGTCTCCTTTTTGGGTTAAGTTAAAAATCCCCTGT  743

seq1  GGATTGTCCTTTTTTTCCCATAGCAATTTATATAAATTCACCATTTATTA  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTCCTTTTTTTCCCATAGCAATTTATATAAATTCACCATTTATTA  793

seq1  TTTGGGAAACTCATGAAGAACAGTGAATAAAATTGTCAAGCTTCTTTTAT  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAAACTCATGAAGAACAGTGAATAAAATTGTCAAGCTTCTTTTAT  843

seq1  TCTACCACAGTCTGCTAGCTTGAAAAGGGCTTCCTTGATCATAAAATGAT  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCACAGTCTGCTAGCTTGAAAAGGGCTTCCTTGATCATAAAATGAT  893

seq1  CCAGCAAAGGTGAGGCATAGGTGGATCCCTATTTTACAGCACAGAGTGAG  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAAGGTGAGGCATAGGTGGATCCCTATTTTACAGCACAGAGTGAG  943

seq1  TTTCCAAAATGATGAGCTCTTTGTGGATAACCCCACGCAACCTATACTTT  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAAATGATGAGCTCTTTGTGGATAACCCCACGCAACCTATACTTT  993

seq1  CCTCTTTATTTTGCAAATTATTGAATTC  1005
      ||||||||||||||||||||||||||||
seq2  CCTCTTTATTTTGCAAATTATTGAATTC  1021


seq1: chr3_149436196_149437309
seq2: B6Ng01-345C02.g_68_1171

seq1  GAATTCCCCTGAGTGTTAACATCATGGGATAAAAAAGAAACAGAAACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTGAGTGTTAACATCATGGGATAAAAAAGAAACAGAAACACT  50

seq1  TCCCATTGGGAATTTTCTGAAAATGGCCATTTCATCTCTACCCAAAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTGGGAATTTTCTGAAAATGGCCATTTCATCTCTACCCAAAGCCA  100

seq1  GGAATCTACAGAGCATACTGAGACAATGGAGGCTCAGAAACTATTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTACAGAGCATACTGAGACAATGGAGGCTCAGAAACTATTTCTTT  150

seq1  AGTCTCATCGTTCACTCTCTAGTCTTCTTATAACTGGAAATAGACTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCATCGTTCACTCTCTAGTCTTCTTATAACTGGAAATAGACTTCCA  200

seq1  AAACTTATATTGAAAGAAAAAAAAACTTTTAAAAAAAGGTAAAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATATTGAAAGAAAAAAAAACTTTTAAAAAAAGGTAAAAAAAAAA  250

seq1  TCACAGCTAGCTAAGAGATATAAAATTGAACATGGATGAAAGATTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCTAGCTAAGAGATATAAAATTGAACATGGATGAAAGATTTTATT  300

seq1  TAACTCATTAACAAGAAAGCTGCTGAGGCGTTACATGCAATTCAAACCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCATTAACAAGAAAGCTGCTGAGGCGTTACATGCAATTCAAACCAG  350

seq1  AATCCAAAGAACAAATAAATTTCTAGACTAAGAATATTGAACTGCATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAAGAACAAATAAATTTCTAGACTAAGAATATTGAACTGCATGTA  400

seq1  TAAATTGAAGCAAAAGAAAATTAATTGAGCCTGTACTGGACAGAACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGAAGCAAAAGAAAATTAATTGAGCCTGTACTGGACAGAACAGAG  450

seq1  ACAATAAACGATCTTGAATTTGGTTATCTAGACCTTGGAGTTGCAAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAACGATCTTGAATTTGGTTATCTAGACCTTGGAGTTGCAAGGTT  500

seq1  ACTCTCGTAGGATGAGCAGTGAGGAACTCTGTGGACCTGTACAGCCTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCGTAGGATGAGCAGTGAGGAACTCTGTGGACCTGTACAGCCTACT  550

seq1  GCGTTGTTCCATTGATGCTCATACCTATCTGTGATTTCAAGGTGTTTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGTTCCATTGATGCTCATACCTATCTGTGATTTCAAGGTGTTTAGA  600

seq1  CCACCTGCCACACTGATAAAGTAGATTCACTGGGGATGAGTGCTTGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCCACACTGATAAAGTAGATTCACTGGGGATGAGTGCTTGTGTC  650

seq1  ATTTCTTATCGCCACTGCAATGCATTTGTGTAATTTAACCAGTCTTAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTATCGCCACTGCAATGCATTTGTGTAATTTAACCAGTCTTAAAC  700

seq1  AACACAGATTTATTATTGAAGAATTCTAAAAGTAGTACACTGCAGCCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGATTTATTATTGAAGAATTCTAAAAGTAGTACACTGCAGCCAAC  750

seq1  AAGGCTGGGTCGCAGATACCTAGCTGCAACTGGTAAAGGAAAAAGTAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGGGTCGCAGATACCTAGCTGCAACTGGTAAAGGAAAAAGTAGGA  800

seq1  GACAGACACAAGTATTGTAAAGTTAGGATCAGGTAGGAATGCAATTATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACACAAGTATTGTAAAGTTAGGATCAGGTAGGAATGCAATTATAC  850

seq1  GAAGATGCCAGAAGTCTAGAATCTCATTGAGTGTATCATATACTTCATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGCCAGAAGTCTAGAATCTCATTGAGTGTATCATATACTTCATGA  900

seq1  ACAAGAAGATGGG-TTAGGTAATCTCAGTCTATGAGGATAT-GGTTTCAG  948
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  ACAAGAAGATGGGTTTAGGTAATCTCAGTCTATGAGGATATGGGTTTCAG  950

seq1  GGGCATGTGATCTCGAAGTATCTGGGATGAAAGGGCTGTGGTCAGTACTC  998
      ||||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  GGGCATGTGATCTCG-AGTATCTGGGATGAAAGGGCTGTGGTCAGTACT-  998

seq1  CATGTTCTCACTGTGTTTAGCTAAAGGTCAGTGGTCTGTCAACATCCTTA  1048
      |||||||||||||||||||||||||||||||| |||||||||||||  ||
seq2  CATGTTCTCACTGTGTTTAGCTAAAGGTCAGT-GTCTGTCAACATC--TA  1045

seq1  TGTAGGGCTGCCTCCTTAAAATCATAAGTCTAAGGCTATGCTCTTGTTAA  1098
      |||| |||||||||  | ||||||| ||||||||||||||||||   |||
seq2  TGTA-GGCTGCCTC--TTAAATCAT-AGTCTAAGGCTATGCTCT--GTAA  1089

seq1  CATGGCATACTCTCTC  1114
      ||| ||||||||||||
seq2  CAT-GCATACTCTCTC  1104


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