BAC Information

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BAC

Clone NameB6Ng01-345D10
Chromosome3 (Build37)
Map Location 47,647,290 - 47,648,396
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545517, LOC383849, LOC383850, LOC100039426
Downstream geneLOC666202, LOC666208, 1700018B24Rik, LOC100039404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345D10.bB6Ng01-345D10.g
ACCGA127480GA127481
length1,2041,113
definitionB6Ng01-345D10.b B6Ng01-345D10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattccagttcctggctattatgaacacagttgctatgaacatag
tcgagtaagtgtccttgtggtggtatatgaagcatctttgggttatatgc
ccaggagtgggataggtgggtcttgaaatagaactactcccaattttatg
agaaaaccacccagttgattaccaaaatgattagacaagtttgtatttga
acccaaaatggagaaatgttctccttgctccacatcctccccagcaggtg
ctgtctcttgagattttgattttagccattctcatggctgtaaagtagaa
tctaggagtcatttttatttgcattttcctacgaatgatgttgaatattt
ctttaagtgtttcttagtcattagatatttctcttttgcgaactatctgt
ttaactctatacaccattttaaaattgaattatttgggttatcagtcact
aacttctgagttctttttatattttggacattagccctctgtcagatata
atgttggtgaagaacatttcccaatttgaagattgtcactttgttctatt
gatggtatcctttgccttactgaagtttttcagtttcatgaggtctcatt
taccaaatgttgatcttagctcctgagccattggtgttttcttcagaaaa
ttgtttcttctactaatgctttcaaggctatttcccactttctcttctat
taaatttagtgtatctgattttatgcttatatccacttggacttgacttt
tatgtagtgtgaaaattatagatttgtttgcaatcttctatatgcacaca
tctacctcatccatcatgataaagtaagcttcatcctagggatgttgaaa
cttcaggtgtaattaggctaagcctgcctttgtatgttccttcgtccttt
tctcttccaacttttgattttctttctttgttgtgtagattttgtgtttt
gattattatgtggtagaatattcgtttctgctacaatcttgatgtctgta
tgcgtcttctatgttatacccccctccttcctttaataaaataaatattt
aatttatttatgtgtgttacgtacactgtagctgtttcagacccacctaa
gaggaagcatctgatccaattatagaatggccttgtagcaacatgttatt
gcttggcaatggaacttcaggacacctcctgtggaaaagataacacgact
atca

gaattcttatccacaagttcatcaattttatgcctttgtagaaaatgcaa
taaatgctcttttcaataatatgttaccaaatatattgaacatgctatta
ataatacaattacttaataaagtattttcagatgtactataaacactcta
gacagtagaagagatatctacttataccttattatagtgtgatactataa
caaaatatctaagtttcagtaacttacataacagaagttcattgcactca
taatgttggtggtggtcgaaattctgcatgcctactttttagtgggcctc
ttaacttaataaatttggacaaaggaacagaaagaatcttactatgtgta
caagggagaagtgggtaactttactttatgaggaactcagagttcaaaaa
tggcttgacttctttccagtggtggtgccctctggcttaattaccacaac
actaggtagtaagtaagcttccaggacttaagttttcaggagatatcttc
acaccctatctacacaatagtatttccttactcctctgtgtggtttcatg
cacataaccactttacatgtggaatacaaataagagctgcaaaaaaacaa
aaaacaaaaaaacaaacaaacaaataagagctgcaatgaatatatttgca
aaagacctgagaggagaaatgaatggtagaaatagtttgtttgctatttg
tttaatgctttgaattttagaacaattaagtggtgaaacagtgaaacatt
tgcctagattgaatgaggccccaaggttgttctcacacacacagacacac
aagcacacacacaaagagagaaatagacagatagagacggagacaaacag
agatggagagagggaaaaacaaagataaataaataaatctaaaaaaaatt
aacatttacagtaacttaaagaaaacaatatatttgaaagtagaaactat
agctgtaactatttcaatttaaaaaacaggagaatggcagtcatataata
ctggtggtatacttttctagagtgtgtgatataaaacataggatatatct
ggaaatttaactgtgttactgtacaatggaaagtaggcttagtcctcaat
tgtataatgcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_47647290_47648396
seq2: B6Ng01-345D10.g_65_1177

seq1  GAATTCTTATCCACAAGTTCATCAATTTTATGCCTTTGTAGAAAATGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCCACAAGTTCATCAATTTTATGCCTTTGTAGAAAATGCAA  50

seq1  TAAATGCTCTTTTCAATAATATGTTACCAAATATATTGAACATGCTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTCTTTTCAATAATATGTTACCAAATATATTGAACATGCTATTA  100

seq1  ATAATACAATTACTTAATAAAGTATTTTCAGATGTACTATAAACACTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACAATTACTTAATAAAGTATTTTCAGATGTACTATAAACACTCTA  150

seq1  GACAGTAGAAGAGATATCTACTTATACCTTATTATAGTGTGATACTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAGAAGAGATATCTACTTATACCTTATTATAGTGTGATACTATAA  200

seq1  CAAAATATCTAAGTTTCAGTAACTTACATAACAGAAGTTCATTGCACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATCTAAGTTTCAGTAACTTACATAACAGAAGTTCATTGCACTCA  250

seq1  TAATGTTGGTGGTGGTCGAAATTCTGCATGCCTACTTTTTAGTGGGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTGGTGGTGGTCGAAATTCTGCATGCCTACTTTTTAGTGGGCCTC  300

seq1  TTAACTTAATAAATTTGGACAAAGGAACAGAAAGAATCTTACTATGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTAATAAATTTGGACAAAGGAACAGAAAGAATCTTACTATGTGTA  350

seq1  CAAGGGAGAAGTGGGTAACTTTACTTTATGAGGAACTCAGAGTTCAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAGAAGTGGGTAACTTTACTTTATGAGGAACTCAGAGTTCAAAAA  400

seq1  TGGCTTGACTTCTTTCCAGTGGTGGTGCCCTCTGGCTTAATTACCACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGACTTCTTTCCAGTGGTGGTGCCCTCTGGCTTAATTACCACAAC  450

seq1  ACTAGGTAGTAAGTAAGCTTCCAGGACTTAAGTTTTCAGGAGATATCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTAGTAAGTAAGCTTCCAGGACTTAAGTTTTCAGGAGATATCTTC  500

seq1  ACACCCTATCTACACAATAGTATTTCCTTACTCCTCTGTGTGGTTTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTATCTACACAATAGTATTTCCTTACTCCTCTGTGTGGTTTCATG  550

seq1  CACATAACCACTTTACATGTGGAATACAAATAAGAGCTGCAAAAAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAACCACTTTACATGTGGAATACAAATAAGAGCTGCAAAAAAACAA  600

seq1  AAAACAAAAAAACAAACAAACAAATAAGAGCTGCAATGAATATATTTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAAACAAACAAACAAATAAGAGCTGCAATGAATATATTTGCA  650

seq1  AAAGACCTGAGAGGAGAAATGAATGGTAGAAATAGTTTGTTTGCTATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCTGAGAGGAGAAATGAATGGTAGAAATAGTTTGTTTGCTATTTG  700

seq1  TTTAATGCTTTGAATTTTAGAACAATTAAGTGGTGAAACAGTGAAACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCTTTGAATTTTAGAACAATTAAGTGGTGAAACAGTGAAACATT  750

seq1  TGCCTAGATTGAATGAGGCCCCAAGGTTGTTCTCACACACACAGACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGATTGAATGAGGCCCCAAGGTTGTTCTCACACACACAGACACAC  800

seq1  AAGCACACACACAAAGAGAGAAATAGACAGATAGAGACGGAGACAAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACACACAAAGAGAGAAATAGACAGATAGAGACGGAGACAAACAG  850

seq1  AGATGGAGAGAGGGAAAAACAAAGATAAATAAATAAATCT-AAAAAAATT  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGATGGAGAGAGGGAAAAACAAAGATAAATAAATAAATCTAAAAAAAATT  900

seq1  AACATTTACAGTAACTTAAAGAAAACAATATATTTG-AAGTAGAAACTAT  948
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AACATTTACAGTAACTTAAAGAAAACAATATATTTGAAAGTAGAAACTAT  950

seq1  AGCTGTAACTATTTCAATTT-AAAAACAGGAG-ATGGCAGTCATAT-ATA  995
      |||||||||||||||||||| ||||||||||| ||||||||||||| |||
seq2  AGCTGTAACTATTTCAATTTAAAAAACAGGAGAATGGCAGTCATATAATA  1000

seq1  CTGGTGGTATACTTTTCTAGAGTGTGTGATATAAAACAATAGAATAATAA  1045
      ||||||||||||||||||||||||||||||||||||| |||| |||   |
seq2  CTGGTGGTATACTTTTCTAGAGTGTGTGATATAAAAC-ATAGGATA--TA  1047

seq1  TCTGGAAA-TTAACTGTGTTACTGTACAATGG-AAGTAGGCTTAGT-CTC  1092
      |||||||| ||||||||||||||||||||||| ||||||||||||| |||
seq2  TCTGGAAATTTAACTGTGTTACTGTACAATGGAAAGTAGGCTTAGTCCTC  1097

seq1  -ATTGTATAATGCACA  1107
       |||||||||||||||
seq2  AATTGTATAATGCACA  1113


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