BAC Information

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BAC

Clone NameB6Ng01-345E16
Chromosome3 (Build37)
Map Location 112,956,455 - 113,060,994
singlet/doubletdoublet
Overlap geneOTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1
Upstream geneEG229746, LOC668717, Utp14B-ps, EG433643
Downstream geneLOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3, Col11a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345E16.bB6Ng01-345E16.g
ACCGA127536GA127537
length1,1851,116
definitionB6Ng01-345E16.b B6Ng01-345E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,956,455 - 112,957,636)(113,059,885 - 113,060,994)
sequence
gaattcatttcctcattcagccatttacacatttatcaatagcaaaattt
atatgggttttgattggaacatggaatgcactgattttctaatgtggatg
cagaatctaaaatttcttgtaactatagagactatcagagattaaaatag
gtgagcattttagttggttcattctcatttctgatcttctctctctctct
ccatgtctctttctccatttctttttttattccctctcttatctttattt
tacagatgtcaaaacattgaaaaaaaagttgcttatattaagtacgctgc
tacacaattgagactgtaaatcagtatttgtagattgggtctatatatta
tccatatttctaatatttccaatttatcatatttatataattgataaaac
taaggttttatttttttcagacaaatgttctcaagagcactcctgccttt
atcattgagtttgatatatccttacatattgcaacaaaaatacaggacat
tttttctttctcgtttttcatttcagcattctttcttagtaatgttttcc
ctgctccccccaccaatgaaatctaaatgaaatgtccaatggcttttcat
aaatttctgtgcatatgtagaaacatataccgttctttatttccatgact
gtttctctcattacctgataagcatcattgtagttactaatttctccatt
acatttattatcgttaaagtcccaagcagagtatggaactgctgggaatt
ccctgttatttggattgaggtaacttccacaggtactgcttgttcctgca
ggattgcctgagccacacatgtggttaatgacagcatccacataaatacg
gacctaacaaagaaaagtgcatatttcagttggactcaaaaatctatagt
ttcacagcaaagatccaaaacatttcatctgctgctttgtagattcactt
tagaaaagtgaatttacaaacagggtaatggatacagaaaatgtgataca
tttacacaatgggattactatgcagctattaaaataatttatgaaattct
agacaatagatggactggaggaatattctctctgagtggaggtgactcaa
ttcacaagaacacaccatggatatggccacctcactgatatggaattagc
cggaaggctcagaattacctgagaattacaatttg
gaattcagagacatggtgacaaggtgcaacaatgttggtgtaagtgagga
cacattttctttaaaaattatggaaatattatgtggaaatatttctcttt
tgtgtctatttctttttgtttaatcaagatttaaagttctaaaattttac
tttacattttatgagttattgaaaatacacttttatcttattgtcaactt
ttattggatttttaaaaatttacatttcaaatattatcccttttcccgta
tttccccaagacactgcctctcccacccctttgcccctgcttctacaagg
gtgttcccccacccactcacccacctactactccatctctgccccctcaa
ttcccctacacttcggaattgagccttcacaggaccaagggcctcttctc
ctattgatgcccgacaaggacaaggccatcgcctgctacatatgcagatg
gatccatggatcccttcatgagtacttcttggttggtggtttagtcccta
ggagctctggggtgtctggttgttgaaatccttgcataacataccgtttg
agggtgaaggaatagtactcataaagtaaaatattgacttttaaaattaa
taagtgttaaaacatcctaaagtatttttgtgggcactgattgatatgtg
aggattaagtcgttttctaaccacaatttttaggttttcttaccctatta
ttattttaggtggtaaatatctgctttgttctataatgaagagatcggta
cctttcctctggtctttagccatgtagtgtataaattaagctatgatcaa
tctccttgtaaccctgtaaaatgtcaaatacaataggctcaaatatatac
cttgccctacattgtcaaaacagaccttttgtttgtagttctggtagtgt
ctgtttcttttcttcttaagagctctatatcttttttccatgtataatga
ctatagttgattcttatttcacagcagcttccttttttcacttgactcac
ttttctaaagtgaaactacaaagcaatcaggtgaatgttttggagattgc
tgtgagattgccatgtactatcagcttttttttttagtaccactggaaat
attgcactttttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_112956455_112957636
seq2: B6Ng01-345E16.b_46_1230

seq1  GAATTCATTTCCTCATTCAGCCATTTACACATTTATCAATAGCAAAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCTCATTCAGCCATTTACACATTTATCAATAGCAAAATTT  50

seq1  ATATGGGTTTTGATTGGAACATGGAATGCACTGATTTTCTAATGTGGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGTTTTGATTGGAACATGGAATGCACTGATTTTCTAATGTGGATG  100

seq1  CAGAATCTAAAATTTCTTGTAACTATAGAGACTATCAGAGATTAAAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCTAAAATTTCTTGTAACTATAGAGACTATCAGAGATTAAAATAG  150

seq1  GTGAGCATTTTAGTTGGTTCATTCTCATTTCTGATCTTCTCTCTCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCATTTTAGTTGGTTCATTCTCATTTCTGATCTTCTCTCTCTCTCT  200

seq1  CCATGTCTCTTTCTCCATTTCTTTTTTTATTCCCTCTCTTATCTTTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCTCTTTCTCCATTTCTTTTTTTATTCCCTCTCTTATCTTTATTT  250

seq1  TACAGATGTCAAAACATTGAAAAAAAAGTTGCTTATATTAAGTACGCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGTCAAAACATTGAAAAAAAAGTTGCTTATATTAAGTACGCTGC  300

seq1  TACACAATTGAGACTGTAAATCAGTATTTGTAGATTGGGTCTATATATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAATTGAGACTGTAAATCAGTATTTGTAGATTGGGTCTATATATTA  350

seq1  TCCATATTTCTAATATTTCCAATTTATCATATTTATATAATTGATAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTTCTAATATTTCCAATTTATCATATTTATATAATTGATAAAAC  400

seq1  TAAGGTTTTATTTTTTTCAGACAAATGTTCTCAAGAGCACTCCTGCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTTTATTTTTTTCAGACAAATGTTCTCAAGAGCACTCCTGCCTTT  450

seq1  ATCATTGAGTTTGATATATCCTTACATATTGCAACAAAAATACAGGACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGAGTTTGATATATCCTTACATATTGCAACAAAAATACAGGACAT  500

seq1  TTTTTCTTTCTCGTTTTTCATTTCAGCATTCTTTCTTAGTAATGTTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTCTCGTTTTTCATTTCAGCATTCTTTCTTAGTAATGTTTTCC  550

seq1  CTGCTCCCCCCACCAATGAAATCTAAATGAAATGTCCAATGGCTTTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCCCCCACCAATGAAATCTAAATGAAATGTCCAATGGCTTTTCAT  600

seq1  AAATTTCTGTGCATATGTAGAAACATATACCGTTCTTTATTTCCATGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTGTGCATATGTAGAAACATATACCGTTCTTTATTTCCATGACT  650

seq1  GTTTCTCTCATTACCTGATAAGCATCATTGTAGTTACTAATTTCTCCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTCATTACCTGATAAGCATCATTGTAGTTACTAATTTCTCCATT  700

seq1  ACATTTATTATCGTTAAAGTCCCAAGCAGAGTATGGAACTGCTGGGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATTATCGTTAAAGTCCCAAGCAGAGTATGGAACTGCTGGGAATT  750

seq1  CCCTGTTATTTGGATTGAGGTAACTTCCACAGGTACTGCTTGTTCCTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTATTTGGATTGAGGTAACTTCCACAGGTACTGCTTGTTCCTGCA  800

seq1  GGATTGCCTGAGCCACACATGTGGTTAATGACAGCATCCACATAAATACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCCTGAGCCACACATGTGGTTAATGACAGCATCCACATAAATACG  850

seq1  GACCTAACAAAGAAAAGTGCATATTTCAGTTGGACTCAAAAATCTATAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAACAAAGAAAAGTGCATATTTCAGTTGGACTCAAAAATCTATAGT  900

seq1  TTCACAGCAAAGATCCAAAACATTTCATCTGCTGCTTTGTAGATTCACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGCAAAGATCCAAAACATTTCATCTGCTGCTTTGTAGATTCACTT  950

seq1  TAGAAAAGTGAATTTACAAACAGGGTAATGGATACAGAAAATGTGATACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGTGAATTTACAAACAGGGTAATGGATACAGAAAATGTGATACA  1000

seq1  TTTACACAAT-GGATTACTATGCAGCTATTAAAAATTAATTTATGAAATT  1049
      |||||||||| |||||||||||||||||||||||  ||||||||||||||
seq2  TTTACACAATGGGATTACTATGCAGCTATTAAAA--TAATTTATGAAATT  1048

seq1  CTTAGACAAATAGATGGACCTGGAGG-ATA-TCTCTCTGAGT-GAGGTGA  1096
      | ||||| |||||||||| ||||||| ||| ||||||||||| |||||||
seq2  C-TAGAC-AATAGATGGA-CTGGAGGAATATTCTCTCTGAGTGGAGGTGA  1095

seq1  CCCAATCACAAAAGAACACA-CAT-GATATG--CA-CTCACTGATAAATG  1141
      | ||||  || ||||||||| ||| ||||||  || |||||||||  |||
seq2  CTCAAT-TCACAAGAACACACCATGGATATGGCCACCTCACTGAT--ATG  1142

seq1  GATATTAGCCCAGAAGCTCAGAA-TACCCAAGA--TACAATTTG  1182
      || |||||||   | |||||||| ||||  |||  |||||||||
seq2  GA-ATTAGCCGGAAGGCTCAGAATTACCTGAGAATTACAATTTG  1185

seq1: chr3_113059885_113060994
seq2: B6Ng01-345E16.g_66_1181 (reverse)

seq1  AAAG-AAAAGTGC-ATATTT-CAGTTGTACTAAAAAAAAAA-CTG-TAGT  45
      |||| |||||||| |||||| |||| ||||||||||||||| ||| ||| 
seq2  AAAGAAAAAGTGCAATATTTCCAGTGGTACTAAAAAAAAAAGCTGATAG-  49

seq1  TACATTGCAATCTCACAGCAAATCTCCAAAACATTTCACCTGA-TGCTTT  94
      ||||| ||||||||||||| ||||||||||||| ||||||||| ||||||
seq2  TACATGGCAATCTCACAGC-AATCTCCAAAACA-TTCACCTGATTGCTTT  97

seq1  GTAGTTTCACTTTAGAAAAGTGAGTCAAGTG-AAAAAGGAAGCTGCTGTG  143
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTAGTTTCACTTTAGAAAAGTGAGTCAAGTGAAAAAAGGAAGCTGCTGTG  147

seq1  AAATAAG-ATCAACTATAGTCATTATACATGGAAAAAAGATATAGAGCTC  192
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAATCAACTATAGTCATTATACATGGAAAAAAGATATAGAGCTC  197

seq1  TTAAGAAG-AAAGAAACAGACACTACCAGAACTACAAACAAAAGGTCTGT  241
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAGAAAAGAAACAGACACTACCAGAACTACAAACAAAAGGTCTGT  247

seq1  TTTGACAATGTAGGGCAAGGTATATATTTGAGCCTATTGTATTTGACATT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAATGTAGGGCAAGGTATATATTTGAGCCTATTGTATTTGACATT  297

seq1  TTACAGGGTTACAAGGAGATTGATCATAGCTTAATTTATACACTACATGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGTTACAAGGAGATTGATCATAGCTTAATTTATACACTACATGG  347

seq1  CTAAAGACCAGAGGAAAGGTACCGATCTCTTCATTATAGAACAAAGCAGA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGACCAGAGGAAAGGTACCGATCTCTTCATTATAGAACAAAGCAGA  397

seq1  TATTTACCACCTAAAATAATAATAGGGTAAGAAAACCTAAAAATTGTGGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACCACCTAAAATAATAATAGGGTAAGAAAACCTAAAAATTGTGGT  447

seq1  TAGAAAACGACTTAATCCTCACATATCAATCAGTGCCCACAAAAATACTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAACGACTTAATCCTCACATATCAATCAGTGCCCACAAAAATACTT  497

seq1  TAGGATGTTTTAACACTTATTAATTTTAAAAGTCAATATTTTACTTTATG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGTTTTAACACTTATTAATTTTAAAAGTCAATATTTTACTTTATG  547

seq1  AGTACTATTCCTTCACCCTCAAACGGTATGTTATGCAAGGATTTCAACAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTATTCCTTCACCCTCAAACGGTATGTTATGCAAGGATTTCAACAA  597

seq1  CCAGACACCCCAGAGCTCCTAGGGACTAAACCACCAACCAAGAAGTACTC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACACCCCAGAGCTCCTAGGGACTAAACCACCAACCAAGAAGTACTC  647

seq1  ATGAAGGGATCCATGGATCCATCTGCATATGTAGCAGGCGATGGCCTTGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGGATCCATGGATCCATCTGCATATGTAGCAGGCGATGGCCTTGT  697

seq1  CCTTGTCGGGCATCAATAGGAGAAGAGGCCCTTGGTCCTGTGAAGGCTCA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCGGGCATCAATAGGAGAAGAGGCCCTTGGTCCTGTGAAGGCTCA  747

seq1  ATTCCGAAGTGTAGGGGAATTGAGGGGGCAGAGATGGAGTAGTAGGTGGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCGAAGTGTAGGGGAATTGAGGGGGCAGAGATGGAGTAGTAGGTGGG  797

seq1  TGAGTGGGTGGGGGAACACCCTTGTAGAAGCAGGGGCAAAGGGGTGGGAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGGTGGGGGAACACCCTTGTAGAAGCAGGGGCAAAGGGGTGGGAG  847

seq1  AGGCAGTGTCTTGGGGAAATACGGGAAAAGGGATAATATTTGAAATGTAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTGTCTTGGGGAAATACGGGAAAAGGGATAATATTTGAAATGTAA  897

seq1  ATTTTTAAAAATCCAATAAAAGTTGACAATAAGATAAAAGTGTATTTTCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAAATCCAATAAAAGTTGACAATAAGATAAAAGTGTATTTTCA  947

seq1  ATAACTCATAAAATGTAAAGTAAAATTTTAGAACTTTAAATCTTGATTAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCATAAAATGTAAAGTAAAATTTTAGAACTTTAAATCTTGATTAA  997

seq1  ACAAAAAGAAATAGACACAAAAGAGAAATATTTCCACATAATATTTCCAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGAAATAGACACAAAAGAGAAATATTTCCACATAATATTTCCAT  1047

seq1  AATTTTTAAAGAAAATGTGTCCTCACTTACACCAACATTGTTGCACCTTG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAAAGAAAATGTGTCCTCACTTACACCAACATTGTTGCACCTTG  1097

seq1  TCACCATGTCTCTGAATTC  1110
      |||||||||||||||||||
seq2  TCACCATGTCTCTGAATTC  1116